HEADER IMMUNE SYSTEM 14-DEC-16 5MOL TITLE HUMAN IGE-FC CRYSTAL STRUCTURE COMPND MOL_ID: 1; COMPND 2 MOLECULE: IG EPSILON CHAIN C REGION; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: IGHE; SOURCE 6 EXPRESSION_SYSTEM: MUS MUSCULUS; SOURCE 7 EXPRESSION_SYSTEM_COMMON: MOUSE; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 10090; SOURCE 9 EXPRESSION_SYSTEM_CELL_LINE: NSO KEYWDS IMMUNOGLOBULIN E, IGE-FC, ANTIBODIES, IMMUNE SYSTEM EXPDTA X-RAY DIFFRACTION AUTHOR K.A.DORE,A.M.DAVIES,N.DRINKWATER,A.J.BEAVIL,J.M.MCDONNELL,B.J.SUTTON REVDAT 3 17-JAN-24 5MOL 1 HETSYN LINK REVDAT 2 29-JUL-20 5MOL 1 COMPND REMARK HETNAM LINK REVDAT 2 2 1 SITE ATOM REVDAT 1 10-JAN-18 5MOL 0 JRNL AUTH K.A.DORE,A.M.DAVIES,N.DRINKWATER,A.J.BEAVIL,J.M.MCDONNELL, JRNL AUTH 2 B.J.SUTTON JRNL TITL THERMAL SENSITIVITY AND FLEXIBILITY OF THE C EPSILON 3 JRNL TITL 2 DOMAINS IN IMMUNOGLOBULIN E. JRNL REF BIOCHIM. BIOPHYS. ACTA V.1865 1336 2017 JRNL REFN ISSN 0006-3002 JRNL PMID 28844738 JRNL DOI 10.1016/J.BBAPAP.2017.08.005 REMARK 2 REMARK 2 RESOLUTION. 1.75 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.10_2155: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.75 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 79.82 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 3 NUMBER OF REFLECTIONS : 80159 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.199 REMARK 3 R VALUE (WORKING SET) : 0.197 REMARK 3 FREE R VALUE : 0.232 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.010 REMARK 3 FREE R VALUE TEST SET COUNT : 4016 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 79.8999 - 5.3761 0.99 2833 151 0.1707 0.2230 REMARK 3 2 5.3761 - 4.2672 1.00 2733 141 0.1334 0.1397 REMARK 3 3 4.2672 - 3.7278 1.00 2693 139 0.1499 0.1724 REMARK 3 4 3.7278 - 3.3870 1.00 2677 146 0.1656 0.1972 REMARK 3 5 3.3870 - 3.1442 1.00 2660 134 0.1747 0.1985 REMARK 3 6 3.1442 - 2.9588 1.00 2659 140 0.1863 0.2576 REMARK 3 7 2.9588 - 2.8106 1.00 2630 146 0.1837 0.2133 REMARK 3 8 2.8106 - 2.6883 0.99 2639 131 0.1875 0.2227 REMARK 3 9 2.6883 - 2.5848 1.00 2631 140 0.1934 0.2298 REMARK 3 10 2.5848 - 2.4956 1.00 2618 147 0.1908 0.2521 REMARK 3 11 2.4956 - 2.4175 1.00 2625 129 0.1929 0.2348 REMARK 3 12 2.4175 - 2.3484 1.00 2611 147 0.2091 0.2506 REMARK 3 13 2.3484 - 2.2866 1.00 2607 142 0.2010 0.2522 REMARK 3 14 2.2866 - 2.2308 1.00 2651 130 0.2110 0.2314 REMARK 3 15 2.2308 - 2.1801 1.00 2607 142 0.2110 0.2309 REMARK 3 16 2.1801 - 2.1337 1.00 2614 141 0.2208 0.2824 REMARK 3 17 2.1337 - 2.0910 0.99 2601 132 0.2336 0.2809 REMARK 3 18 2.0910 - 2.0516 1.00 2607 125 0.2407 0.2952 REMARK 3 19 2.0516 - 2.0149 0.99 2581 152 0.2345 0.2812 REMARK 3 20 2.0149 - 1.9808 0.99 2598 146 0.2556 0.2878 REMARK 3 21 1.9808 - 1.9488 0.99 2604 128 0.2743 0.2825 REMARK 3 22 1.9488 - 1.9188 0.99 2616 131 0.2876 0.3201 REMARK 3 23 1.9188 - 1.8906 0.99 2565 132 0.3112 0.3353 REMARK 3 24 1.8906 - 1.8640 0.99 2597 135 0.3280 0.3470 REMARK 3 25 1.8640 - 1.8388 0.99 2580 146 0.3526 0.4170 REMARK 3 26 1.8388 - 1.8149 0.99 2569 136 0.3553 0.4020 REMARK 3 27 1.8149 - 1.7922 0.99 2610 140 0.3788 0.3807 REMARK 3 28 1.7922 - 1.7706 0.99 2565 119 0.3842 0.4591 REMARK 3 29 1.7706 - 1.7500 0.99 2562 148 0.4001 0.3757 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.270 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 26.420 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.009 5292 REMARK 3 ANGLE : 0.944 7253 REMARK 3 CHIRALITY : 0.059 870 REMARK 3 PLANARITY : 0.006 910 REMARK 3 DIHEDRAL : 13.253 3232 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 6 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 228 THROUGH 340 ) REMARK 3 ORIGIN FOR THE GROUP (A): 19.1383 -23.1648 16.5410 REMARK 3 T TENSOR REMARK 3 T11: 0.1590 T22: 0.1637 REMARK 3 T33: 0.1594 T12: -0.0206 REMARK 3 T13: -0.0214 T23: 0.0073 REMARK 3 L TENSOR REMARK 3 L11: 0.8767 L22: 1.4409 REMARK 3 L33: 1.7442 L12: -0.1450 REMARK 3 L13: -0.0324 L23: -0.0029 REMARK 3 S TENSOR REMARK 3 S11: 0.0804 S12: 0.0563 S13: -0.0845 REMARK 3 S21: -0.0666 S22: -0.0509 S23: 0.0588 REMARK 3 S31: 0.0610 S32: -0.0367 S33: -0.0004 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 341 THROUGH 433 ) REMARK 3 ORIGIN FOR THE GROUP (A): 34.7706 -16.1124 -6.8458 REMARK 3 T TENSOR REMARK 3 T11: 0.5300 T22: 0.2469 REMARK 3 T33: 0.4179 T12: 0.0043 REMARK 3 T13: 0.0957 T23: 0.0169 REMARK 3 L TENSOR REMARK 3 L11: 1.8593 L22: 1.5041 REMARK 3 L33: 1.4498 L12: 1.1928 REMARK 3 L13: -0.3556 L23: 0.4003 REMARK 3 S TENSOR REMARK 3 S11: 0.0529 S12: 0.2336 S13: 0.5819 REMARK 3 S21: -0.1043 S22: 0.2701 S23: -0.4088 REMARK 3 S31: -0.7764 S32: -0.2620 S33: 0.0411 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 434 THROUGH 544 ) REMARK 3 ORIGIN FOR THE GROUP (A): 38.6608 -39.0834 -23.8427 REMARK 3 T TENSOR REMARK 3 T11: 0.1351 T22: 0.1460 REMARK 3 T33: 0.1905 T12: -0.0054 REMARK 3 T13: 0.0091 T23: 0.0239 REMARK 3 L TENSOR REMARK 3 L11: 2.0679 L22: 1.8311 REMARK 3 L33: 1.6504 L12: -0.2392 REMARK 3 L13: 0.8740 L23: 0.1655 REMARK 3 S TENSOR REMARK 3 S11: 0.1087 S12: 0.0924 S13: 0.2803 REMARK 3 S21: 0.0078 S22: -0.1086 S23: -0.0881 REMARK 3 S31: 0.0212 S32: 0.0160 S33: 0.0006 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 225 THROUGH 306 ) REMARK 3 ORIGIN FOR THE GROUP (A): 16.0442 -37.4843 6.6038 REMARK 3 T TENSOR REMARK 3 T11: 0.4362 T22: 0.3313 REMARK 3 T33: 0.2959 T12: -0.0470 REMARK 3 T13: 0.0184 T23: -0.0144 REMARK 3 L TENSOR REMARK 3 L11: 1.7402 L22: 1.0617 REMARK 3 L33: 1.3625 L12: -0.0429 REMARK 3 L13: 0.0888 L23: 0.5756 REMARK 3 S TENSOR REMARK 3 S11: -0.0586 S12: -0.1612 S13: -0.5531 REMARK 3 S21: -0.2405 S22: -0.1422 S23: -0.0377 REMARK 3 S31: 0.6094 S32: -0.1638 S33: -0.0019 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 307 THROUGH 370 ) REMARK 3 ORIGIN FOR THE GROUP (A): 7.1208 -29.2026 -15.2534 REMARK 3 T TENSOR REMARK 3 T11: 0.2953 T22: 0.3094 REMARK 3 T33: 0.2749 T12: 0.0001 REMARK 3 T13: -0.0089 T23: -0.0110 REMARK 3 L TENSOR REMARK 3 L11: 0.1833 L22: 0.1466 REMARK 3 L33: 1.8458 L12: 0.0070 REMARK 3 L13: 0.7539 L23: 0.1133 REMARK 3 S TENSOR REMARK 3 S11: -0.0562 S12: -0.2145 S13: 0.0212 REMARK 3 S21: 0.2811 S22: -0.0547 S23: -0.0696 REMARK 3 S31: 0.0237 S32: -0.3011 S33: -0.0007 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 371 THROUGH 545 ) REMARK 3 ORIGIN FOR THE GROUP (A): 14.3373 -35.4594 -30.5472 REMARK 3 T TENSOR REMARK 3 T11: 0.1328 T22: 0.1443 REMARK 3 T33: 0.1257 T12: -0.0251 REMARK 3 T13: -0.0094 T23: 0.0015 REMARK 3 L TENSOR REMARK 3 L11: 1.7342 L22: 0.8141 REMARK 3 L33: 0.8178 L12: -0.6893 REMARK 3 L13: 0.2285 L23: -0.2118 REMARK 3 S TENSOR REMARK 3 S11: 0.0096 S12: -0.0957 S13: 0.1277 REMARK 3 S21: 0.0301 S22: -0.0217 S23: -0.0816 REMARK 3 S31: -0.0457 S32: -0.0166 S33: -0.0020 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5MOL COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 14-DEC-16. REMARK 100 THE DEPOSITION ID IS D_1200002486. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 28-FEB-16 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I04-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97949 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : PSI PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DIALS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 80503 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.750 REMARK 200 RESOLUTION RANGE LOW (A) : 79.820 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 13.10 REMARK 200 R MERGE (I) : 0.09800 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 14.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.75 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.80 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.8 REMARK 200 DATA REDUNDANCY IN SHELL : 11.40 REMARK 200 R MERGE FOR SHELL (I) : 1.98200 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.300 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 2WQR REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 54.74 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.72 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M TRIS HCL PH 8.5 25% PEG 550 MME, REMARK 280 VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X+1/2,Y+1/2,-Z REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 65.33700 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 37.89100 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 65.33700 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 37.89100 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH B 770 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ASP A 222 REMARK 465 ILE A 223 REMARK 465 VAL A 224 REMARK 465 ALA A 225 REMARK 465 SER A 226 REMARK 465 ARG A 227 REMARK 465 PRO A 545 REMARK 465 GLY A 546 REMARK 465 LYS A 547 REMARK 465 ASP B 222 REMARK 465 ILE B 223 REMARK 465 VAL B 224 REMARK 465 GLY B 546 REMARK 465 LYS B 547 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 287 CD OE1 OE2 REMARK 470 LYS A 302 CE NZ REMARK 470 ARG A 334 NE CZ NH1 NH2 REMARK 470 LYS A 352 CE NZ REMARK 470 LYS A 367 CD CE NZ REMARK 470 GLN A 371 CG CD OE1 NE2 REMARK 470 ARG A 387 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 388 CG CD CE NZ REMARK 470 GLU A 389 OE1 OE2 REMARK 470 LYS A 391 CG CD CE NZ REMARK 470 ARG A 393 CG CD NE CZ NH1 NH2 REMARK 470 LEU A 397 CG CD1 CD2 REMARK 470 ARG A 408 NE CZ NH1 NH2 REMARK 470 HIS A 422 CG ND1 CD2 CE1 NE2 REMARK 470 HIS A 424 CG ND1 CD2 CE1 NE2 REMARK 470 ARG A 427 NE CZ NH1 NH2 REMARK 470 ARG A 440 CZ NH1 NH2 REMARK 470 ARG A 457 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 459 CE NZ REMARK 470 GLN A 494 CG CD OE1 NE2 REMARK 470 LYS A 497 CD CE NZ REMARK 470 ARG B 227 CG CD NE CZ NH1 NH2 REMARK 470 GLN B 265 CG CD OE1 NE2 REMARK 470 GLN B 273 CG CD OE1 NE2 REMARK 470 GLU B 287 CG CD OE1 OE2 REMARK 470 GLU B 289 CG CD OE1 OE2 REMARK 470 LYS B 302 NZ REMARK 470 HIS B 319 CG ND1 CD2 CE1 NE2 REMARK 470 LYS B 367 CG CD CE NZ REMARK 470 LYS B 388 CD CE NZ REMARK 470 LYS B 391 CG CD CE NZ REMARK 470 ARG B 393 CZ NH1 NH2 REMARK 470 ARG B 427 CG CD NE CZ NH1 NH2 REMARK 470 LYS B 459 CG CD CE NZ REMARK 470 LYS B 497 CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OD2 ASP A 307 O HOH A 701 2.12 REMARK 500 O HOH A 893 O HOH B 785 2.14 REMARK 500 O HOH A 904 O HOH A 969 2.17 REMARK 500 O HOH B 985 O HOH B 996 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PRO A 365 29.44 -77.06 REMARK 500 ILE B 350 -62.08 -98.04 REMARK 500 SER B 366 11.04 58.94 REMARK 500 SER B 456 52.66 -146.28 REMARK 500 PRO B 471 -168.86 -76.45 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH B1005 DISTANCE = 6.14 ANGSTROMS REMARK 525 HOH B1006 DISTANCE = 6.31 ANGSTROMS DBREF 5MOL A 224 547 UNP P01854 IGHE_HUMAN 104 428 DBREF 5MOL B 224 547 UNP P01854 IGHE_HUMAN 104 428 SEQADV 5MOL ASP A 222 UNP P01854 EXPRESSION TAG SEQADV 5MOL ILE A 223 UNP P01854 EXPRESSION TAG SEQADV 5MOL ALA A 225 UNP P01854 CYS 105 CONFLICT SEQADV 5MOL GLN A 265 UNP P01854 ASN 146 CONFLICT SEQADV 5MOL GLN A 371 UNP P01854 ASN 252 CONFLICT SEQADV 5MOL ASP B 222 UNP P01854 EXPRESSION TAG SEQADV 5MOL ILE B 223 UNP P01854 EXPRESSION TAG SEQADV 5MOL ALA B 225 UNP P01854 CYS 105 CONFLICT SEQADV 5MOL GLN B 265 UNP P01854 ASN 146 CONFLICT SEQADV 5MOL GLN B 371 UNP P01854 ASN 252 CONFLICT SEQRES 1 A 327 ASP ILE VAL ALA SER ARG ASP PHE THR PRO PRO THR VAL SEQRES 2 A 327 LYS ILE LEU GLN SER SER CYS ASP GLY GLY GLY HIS PHE SEQRES 3 A 327 PRO PRO THR ILE GLN LEU LEU CYS LEU VAL SER GLY TYR SEQRES 4 A 327 THR PRO GLY THR ILE GLN ILE THR TRP LEU GLU ASP GLY SEQRES 5 A 327 GLN VAL MET ASP VAL ASP LEU SER THR ALA SER THR THR SEQRES 6 A 327 GLN GLU GLY GLU LEU ALA SER THR GLN SER GLU LEU THR SEQRES 7 A 327 LEU SER GLN LYS HIS TRP LEU SER ASP ARG THR TYR THR SEQRES 8 A 327 CYS GLN VAL THR TYR GLN GLY HIS THR PHE GLU ASP SER SEQRES 9 A 327 THR LYS LYS CYS ALA ASP SER ASN PRO ARG GLY VAL SER SEQRES 10 A 327 ALA TYR LEU SER ARG PRO SER PRO PHE ASP LEU PHE ILE SEQRES 11 A 327 ARG LYS SER PRO THR ILE THR CYS LEU VAL VAL ASP LEU SEQRES 12 A 327 ALA PRO SER LYS GLY THR VAL GLN LEU THR TRP SER ARG SEQRES 13 A 327 ALA SER GLY LYS PRO VAL ASN HIS SER THR ARG LYS GLU SEQRES 14 A 327 GLU LYS GLN ARG ASN GLY THR LEU THR VAL THR SER THR SEQRES 15 A 327 LEU PRO VAL GLY THR ARG ASP TRP ILE GLU GLY GLU THR SEQRES 16 A 327 TYR GLN CYS ARG VAL THR HIS PRO HIS LEU PRO ARG ALA SEQRES 17 A 327 LEU MET ARG SER THR THR LYS THR SER GLY PRO ARG ALA SEQRES 18 A 327 ALA PRO GLU VAL TYR ALA PHE ALA THR PRO GLU TRP PRO SEQRES 19 A 327 GLY SER ARG ASP LYS ARG THR LEU ALA CYS LEU ILE GLN SEQRES 20 A 327 ASN PHE MET PRO GLU ASP ILE SER VAL GLN TRP LEU HIS SEQRES 21 A 327 ASN GLU VAL GLN LEU PRO ASP ALA ARG HIS SER THR THR SEQRES 22 A 327 GLN PRO ARG LYS THR LYS GLY SER GLY PHE PHE VAL PHE SEQRES 23 A 327 SER ARG LEU GLU VAL THR ARG ALA GLU TRP GLU GLN LYS SEQRES 24 A 327 ASP GLU PHE ILE CYS ARG ALA VAL HIS GLU ALA ALA SER SEQRES 25 A 327 PRO SER GLN THR VAL GLN ARG ALA VAL SER VAL ASN PRO SEQRES 26 A 327 GLY LYS SEQRES 1 B 327 ASP ILE VAL ALA SER ARG ASP PHE THR PRO PRO THR VAL SEQRES 2 B 327 LYS ILE LEU GLN SER SER CYS ASP GLY GLY GLY HIS PHE SEQRES 3 B 327 PRO PRO THR ILE GLN LEU LEU CYS LEU VAL SER GLY TYR SEQRES 4 B 327 THR PRO GLY THR ILE GLN ILE THR TRP LEU GLU ASP GLY SEQRES 5 B 327 GLN VAL MET ASP VAL ASP LEU SER THR ALA SER THR THR SEQRES 6 B 327 GLN GLU GLY GLU LEU ALA SER THR GLN SER GLU LEU THR SEQRES 7 B 327 LEU SER GLN LYS HIS TRP LEU SER ASP ARG THR TYR THR SEQRES 8 B 327 CYS GLN VAL THR TYR GLN GLY HIS THR PHE GLU ASP SER SEQRES 9 B 327 THR LYS LYS CYS ALA ASP SER ASN PRO ARG GLY VAL SER SEQRES 10 B 327 ALA TYR LEU SER ARG PRO SER PRO PHE ASP LEU PHE ILE SEQRES 11 B 327 ARG LYS SER PRO THR ILE THR CYS LEU VAL VAL ASP LEU SEQRES 12 B 327 ALA PRO SER LYS GLY THR VAL GLN LEU THR TRP SER ARG SEQRES 13 B 327 ALA SER GLY LYS PRO VAL ASN HIS SER THR ARG LYS GLU SEQRES 14 B 327 GLU LYS GLN ARG ASN GLY THR LEU THR VAL THR SER THR SEQRES 15 B 327 LEU PRO VAL GLY THR ARG ASP TRP ILE GLU GLY GLU THR SEQRES 16 B 327 TYR GLN CYS ARG VAL THR HIS PRO HIS LEU PRO ARG ALA SEQRES 17 B 327 LEU MET ARG SER THR THR LYS THR SER GLY PRO ARG ALA SEQRES 18 B 327 ALA PRO GLU VAL TYR ALA PHE ALA THR PRO GLU TRP PRO SEQRES 19 B 327 GLY SER ARG ASP LYS ARG THR LEU ALA CYS LEU ILE GLN SEQRES 20 B 327 ASN PHE MET PRO GLU ASP ILE SER VAL GLN TRP LEU HIS SEQRES 21 B 327 ASN GLU VAL GLN LEU PRO ASP ALA ARG HIS SER THR THR SEQRES 22 B 327 GLN PRO ARG LYS THR LYS GLY SER GLY PHE PHE VAL PHE SEQRES 23 B 327 SER ARG LEU GLU VAL THR ARG ALA GLU TRP GLU GLN LYS SEQRES 24 B 327 ASP GLU PHE ILE CYS ARG ALA VAL HIS GLU ALA ALA SER SEQRES 25 B 327 PRO SER GLN THR VAL GLN ARG ALA VAL SER VAL ASN PRO SEQRES 26 B 327 GLY LYS HET NAG C 1 14 HET NAG C 2 14 HET BMA C 3 11 HET MAN C 4 11 HET MAN C 5 11 HET NAG D 1 14 HET NAG D 2 14 HET BMA D 3 11 HET MAN D 4 11 HET MAN D 5 11 HET MAN D 6 11 HET MAN D 7 11 HET PG0 A 606 8 HET EDO A 607 4 HET EDO A 608 4 HET EDO A 609 8 HET PEG A 610 7 HET PG0 B 608 8 HET AE3 B 609 18 HET EDO B 610 4 HET EDO B 611 4 HET PEG B 612 7 HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETNAM BMA BETA-D-MANNOPYRANOSE HETNAM MAN ALPHA-D-MANNOPYRANOSE HETNAM PG0 2-(2-METHOXYETHOXY)ETHANOL HETNAM EDO 1,2-ETHANEDIOL HETNAM PEG DI(HYDROXYETHYL)ETHER HETNAM AE3 2-(2-ETHOXYETHOXY)ETHANOL HETSYN NAG N-ACETYL-BETA-D-GLUCOSAMINE; 2-ACETAMIDO-2-DEOXY-BETA- HETSYN 2 NAG D-GLUCOSE; 2-ACETAMIDO-2-DEOXY-D-GLUCOSE; 2-ACETAMIDO- HETSYN 3 NAG 2-DEOXY-GLUCOSE; N-ACETYL-D-GLUCOSAMINE HETSYN BMA BETA-D-MANNOSE; D-MANNOSE; MANNOSE HETSYN MAN ALPHA-D-MANNOSE; D-MANNOSE; MANNOSE HETSYN PG0 PEG 6000 HETSYN EDO ETHYLENE GLYCOL FORMUL 3 NAG 4(C8 H15 N O6) FORMUL 3 BMA 2(C6 H12 O6) FORMUL 3 MAN 6(C6 H12 O6) FORMUL 5 PG0 2(C5 H12 O3) FORMUL 6 EDO 5(C2 H6 O2) FORMUL 9 PEG 2(C4 H10 O3) FORMUL 11 AE3 C6 H14 O3 FORMUL 15 HOH *601(H2 O) HELIX 1 AA1 ASP A 276 ASP A 278 5 3 HELIX 2 AA2 GLN A 301 SER A 306 1 6 HELIX 3 AA3 ASN A 332 VAL A 336 5 5 HELIX 4 AA4 SER A 344 ILE A 350 1 7 HELIX 5 AA5 GLY A 406 GLU A 412 1 7 HELIX 6 AA6 PRO A 486 ALA A 488 5 3 HELIX 7 AA7 ARG A 513 LYS A 519 1 7 HELIX 8 AA8 ALA B 225 PHE B 229 5 5 HELIX 9 AA9 ASP B 276 ASP B 278 5 3 HELIX 10 AB1 GLN B 301 SER B 306 1 6 HELIX 11 AB2 SER B 344 ILE B 350 1 7 HELIX 12 AB3 GLY B 406 GLU B 412 1 7 HELIX 13 AB4 PRO B 486 ALA B 488 5 3 HELIX 14 AB5 ARG B 513 LYS B 519 1 7 SHEET 1 AA1 8 SER A 280 GLU A 287 0 SHEET 2 AA1 8 LEU A 290 SER A 300 -1 O SER A 292 N THR A 285 SHEET 3 AA1 8 THR A 250 TYR A 259 -1 N VAL A 256 O THR A 293 SHEET 4 AA1 8 LYS A 235 SER A 239 -1 N LEU A 237 O LEU A 253A SHEET 5 AA1 8 VAL B 234 SER B 239 -1 O GLN B 238 N GLN A 238 SHEET 6 AA1 8 THR B 250 TYR B 259 -1 O LEU B 255 N LYS B 235 SHEET 7 AA1 8 LEU B 290 SER B 300 -1 O LEU B 299 N ILE B 251 SHEET 8 AA1 8 SER B 280 GLU B 287 -1 N THR B 285 O SER B 292 SHEET 1 AA2 4 GLN A 273 VAL A 274 0 SHEET 2 AA2 4 ILE A 264 GLU A 270 -1 N GLU A 270 O GLN A 273 SHEET 3 AA2 4 TYR A 310 TYR A 316 -1 O GLN A 313 N THR A 267 SHEET 4 AA2 4 HIS A 319 THR A 325 -1 O PHE A 321 N VAL A 314 SHEET 1 AA3 4 SER A 337 LEU A 340 0 SHEET 2 AA3 4 THR A 355 LEU A 363 -1 O LEU A 359 N TYR A 339 SHEET 3 AA3 4 LEU A 397 PRO A 404 -1 O SER A 401 N CYS A 358 SHEET 4 AA3 4 LYS A 388 LYS A 391 -1 N LYS A 388 O THR A 400 SHEET 1 AA4 3 GLN A 371 ARG A 376 0 SHEET 2 AA4 3 TYR A 416 THR A 421 -1 O GLN A 417 N SER A 375 SHEET 3 AA4 3 LEU A 429 THR A 433 -1 O ARG A 431 N CYS A 418 SHEET 1 AA5 4 GLU A 444 ALA A 449 0 SHEET 2 AA5 4 LYS A 459 PHE A 469 -1 O ALA A 463 N PHE A 448 SHEET 3 AA5 4 PHE A 503 THR A 512 -1 O LEU A 509 N LEU A 462 SHEET 4 AA5 4 HIS A 490 THR A 492 -1 N SER A 491 O ARG A 508 SHEET 1 AA6 4 GLU A 444 ALA A 449 0 SHEET 2 AA6 4 LYS A 459 PHE A 469 -1 O ALA A 463 N PHE A 448 SHEET 3 AA6 4 PHE A 503 THR A 512 -1 O LEU A 509 N LEU A 462 SHEET 4 AA6 4 ARG A 496 LYS A 497 -1 N ARG A 496 O PHE A 504 SHEET 1 AA7 4 VAL A 483 GLN A 484 0 SHEET 2 AA7 4 SER A 475 HIS A 480 -1 N HIS A 480 O VAL A 483 SHEET 3 AA7 4 PHE A 522 VAL A 527 -1 O ARG A 525 N GLN A 477 SHEET 4 AA7 4 THR A 536 VAL A 541 -1 O VAL A 537 N ALA A 526 SHEET 1 AA8 4 GLN B 273 VAL B 274 0 SHEET 2 AA8 4 ILE B 264 GLU B 270 -1 N GLU B 270 O GLN B 273 SHEET 3 AA8 4 TYR B 310 TYR B 316 -1 O GLN B 313 N THR B 267 SHEET 4 AA8 4 HIS B 319 THR B 325 -1 O PHE B 321 N VAL B 314 SHEET 1 AA9 4 SER B 337 LEU B 340 0 SHEET 2 AA9 4 THR B 355 LEU B 363 -1 O LEU B 359 N TYR B 339 SHEET 3 AA9 4 LEU B 397 PRO B 404 -1 O SER B 401 N CYS B 358 SHEET 4 AA9 4 THR B 386 LYS B 391 -1 N LYS B 388 O THR B 400 SHEET 1 AB1 3 GLN B 371 ARG B 376 0 SHEET 2 AB1 3 TYR B 416 THR B 421 -1 O GLN B 417 N SER B 375 SHEET 3 AB1 3 LEU B 429 THR B 433 -1 O LEU B 429 N VAL B 420 SHEET 1 AB2 4 GLU B 444 ALA B 449 0 SHEET 2 AB2 4 LYS B 459 PHE B 469 -1 O GLN B 467 N GLU B 444 SHEET 3 AB2 4 PHE B 503 THR B 512 -1 O LEU B 509 N LEU B 462 SHEET 4 AB2 4 HIS B 490 THR B 492 -1 N SER B 491 O ARG B 508 SHEET 1 AB3 4 GLU B 444 ALA B 449 0 SHEET 2 AB3 4 LYS B 459 PHE B 469 -1 O GLN B 467 N GLU B 444 SHEET 3 AB3 4 PHE B 503 THR B 512 -1 O LEU B 509 N LEU B 462 SHEET 4 AB3 4 ARG B 496 LYS B 497 -1 N ARG B 496 O PHE B 504 SHEET 1 AB4 4 VAL B 483 GLN B 484 0 SHEET 2 AB4 4 SER B 475 HIS B 480 -1 N HIS B 480 O VAL B 483 SHEET 3 AB4 4 PHE B 522 VAL B 527 -1 O ARG B 525 N GLN B 477 SHEET 4 AB4 4 THR B 536 VAL B 541 -1 O VAL B 537 N ALA B 526 SSBOND 1 CYS A 241 CYS B 328 1555 1555 2.05 SSBOND 2 CYS A 254 CYS A 312 1555 1555 2.04 SSBOND 3 CYS A 328 CYS B 241 1555 1555 2.04 SSBOND 4 CYS A 358 CYS A 418 1555 1555 2.05 SSBOND 5 CYS A 464 CYS A 524 1555 1555 2.06 SSBOND 6 CYS B 254 CYS B 312 1555 1555 2.04 SSBOND 7 CYS B 358 CYS B 418 1555 1555 2.06 SSBOND 8 CYS B 464 CYS B 524 1555 1555 2.08 LINK ND2 ASN A 394 C1 NAG C 1 1555 1555 1.45 LINK ND2 ASN B 394 C1 NAG D 1 1555 1555 1.44 LINK O4 NAG C 1 C1 NAG C 2 1555 1555 1.44 LINK O4 NAG C 2 C1 BMA C 3 1555 1555 1.45 LINK O6 BMA C 3 C1 MAN C 4 1555 1555 1.44 LINK O6 MAN C 4 C1 MAN C 5 1555 1555 1.45 LINK O4 NAG D 1 C1 NAG D 2 1555 1555 1.44 LINK O4 NAG D 2 C1 BMA D 3 1555 1555 1.44 LINK O6 BMA D 3 C1 MAN D 4 1555 1555 1.45 LINK O3 BMA D 3 C1 MAN D 7 1555 1555 1.44 LINK O3 MAN D 4 C1 MAN D 5 1555 1555 1.45 LINK O6 MAN D 4 C1 MAN D 6 1555 1555 1.45 CISPEP 1 MET A 470 PRO A 471 0 -3.12 CISPEP 2 SER A 532 PRO A 533 0 5.83 CISPEP 3 MET B 470 PRO B 471 0 -1.66 CISPEP 4 SER B 532 PRO B 533 0 6.04 CISPEP 5 SER B 532 PRO B 533 0 3.40 CRYST1 130.674 75.782 79.817 90.00 90.00 90.00 P 21 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007653 0.000000 0.000000 0.00000 SCALE2 0.000000 0.013196 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012529 0.00000