HEADER SPLICING 16-DEC-16 5MPG TITLE SOLUTION NMR STRUCTURE OF HNRNP A1 RRM1 IN COMPLEX WITH 5'-UUAGGUC-3' TITLE 2 RNA COMPND MOL_ID: 1; COMPND 2 MOLECULE: HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN A1; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: HNRNP A1,HELIX-DESTABILIZING PROTEIN,SINGLE-STRAND RNA- COMPND 5 BINDING PROTEIN,HNRNP CORE PROTEIN A1; COMPND 6 ENGINEERED: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: RNA UUAGGUC; COMPND 9 CHAIN: B; COMPND 10 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: HNRNPA1, HNRPA1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 MOL_ID: 2; SOURCE 9 SYNTHETIC: YES; SOURCE 10 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 11 ORGANISM_COMMON: HUMAN; SOURCE 12 ORGANISM_TAXID: 9606 KEYWDS RRM, SPLICING, RNA EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR P.BARRAUD,F.H.-T.ALLAIN REVDAT 4 15-MAY-24 5MPG 1 REMARK REVDAT 3 08-MAY-19 5MPG 1 REMARK REVDAT 2 12-JUL-17 5MPG 1 REVDAT 1 05-JUL-17 5MPG 0 JRNL AUTH I.BEUSCH,P.BARRAUD,A.MOURSY,A.CLERY,F.H.ALLAIN JRNL TITL TANDEM HNRNP A1 RNA RECOGNITION MOTIFS ACT IN CONCERT TO JRNL TITL 2 REPRESS THE SPLICING OF SURVIVAL MOTOR NEURON EXON 7. JRNL REF ELIFE V. 6 2017 JRNL REFN ESSN 2050-084X JRNL PMID 28650318 JRNL DOI 10.7554/ELIFE.25736 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS REMARK 3 AUTHORS : BRUNGER, ADAMS, CLORE, GROS, NILGES AND READ REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5MPG COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 16-DEC-16. REMARK 100 THE DEPOSITION ID IS D_1200002209. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 303 REMARK 210 PH : 6.5 REMARK 210 IONIC STRENGTH : 10 REMARK 210 PRESSURE : 1 ATM REMARK 210 SAMPLE CONTENTS : 1.0 MM [U-99% 15N] HNRNP A1 REMARK 210 RRM1, 1.0 MM RNA UUAGGUC, 90% REMARK 210 H2O/10% D2O; 1.0 MM [U-99% 13C; REMARK 210 U-99% 15N] HNRNP A1 RRM1, 1.0 MM REMARK 210 RNA UUAGGUC, 90% H2O/10% D2O; REMARK 210 1.0 MM [U-99% 15N] HNRNP A1 RRM1, REMARK 210 1.0 MM RNA UUAGGUC, 100% D2O; REMARK 210 1.0 MM [U-99% 13C; U-99% 15N] REMARK 210 HNRNP A1 RRM1, 1.0 MM RNA REMARK 210 UUAGGUC, 100% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-15N HSQC; 2D 1H-13C HSQC REMARK 210 ALIPHATIC; 2D 1H-13C HSQC REMARK 210 AROMATIC; 3D HNCA; 3D HNCACB; 3D REMARK 210 CBCA(CO)NH; 3D HNCO; 3D HCC(CO) REMARK 210 NH TOCSY; 3D 1H-15N NOESY; 3D 1H- REMARK 210 13C NOESY ALIPHATIC; 3D 1H-13C REMARK 210 NOESY AROMATIC; 2D 1H-1H NOESY; REMARK 210 2D 1H-1H TOCSY; 2D F1FF2F 13C- REMARK 210 FILTERED NOESY; 3D F1EF3F 13C- REMARK 210 FILTERED/EDITED NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 500 MHZ; 600 MHZ; 700 MHZ; 750 REMARK 210 MHZ; 900 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE III REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : TOPSPIN, SPARKY, CYANA, PROCHECK REMARK 210 / PROCHECK-NMR REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 15 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1760 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 6120 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -11.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 H3' G B 5 H5' U B 6 1.16 REMARK 500 OE2 GLU A 11 HG1 THR A 61 1.59 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 8 G B 4 C1' - O4' - C4' ANGL. DEV. = -5.0 DEGREES REMARK 500 12 G B 4 C3' - C2' - C1' ANGL. DEV. = -4.3 DEGREES REMARK 500 18 G B 4 C1' - O4' - C4' ANGL. DEV. = -4.2 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 SER A 2 110.74 71.58 REMARK 500 1 ARG A 53 -76.64 -100.63 REMARK 500 1 ASP A 80 -5.22 70.77 REMARK 500 2 LYS A 3 -70.75 -103.16 REMARK 500 2 SER A 4 -41.86 -165.35 REMARK 500 2 PRO A 7 26.09 -79.62 REMARK 500 2 ASP A 80 -58.87 67.18 REMARK 500 3 GLU A 5 80.87 51.73 REMARK 500 3 PRO A 7 -155.29 -100.92 REMARK 500 3 ASN A 50 -63.55 -97.79 REMARK 500 3 ARG A 53 -76.01 -98.31 REMARK 500 4 ARG A 53 -69.57 -99.71 REMARK 500 5 SER A 2 92.34 64.45 REMARK 500 5 GLU A 5 98.64 -65.30 REMARK 500 7 LYS A 3 -157.78 -153.67 REMARK 500 7 GLU A 5 -63.37 -95.23 REMARK 500 7 SER A 95 -75.94 -74.70 REMARK 500 8 ASN A 50 -62.30 -107.94 REMARK 500 8 ARG A 53 -66.14 -108.57 REMARK 500 9 SER A 4 98.08 70.87 REMARK 500 9 SER A 6 104.96 65.11 REMARK 500 9 PRO A 7 107.22 -44.64 REMARK 500 9 GLU A 9 -84.38 97.49 REMARK 500 9 THR A 25 99.63 -65.08 REMARK 500 10 LYS A 3 -159.12 -137.72 REMARK 500 10 SER A 4 95.98 -68.64 REMARK 500 10 GLU A 5 26.69 -149.58 REMARK 500 10 LYS A 8 43.00 -102.37 REMARK 500 11 LYS A 8 -89.36 -86.08 REMARK 500 11 GLU A 9 -61.24 -165.78 REMARK 500 11 ASN A 50 -60.21 -104.96 REMARK 500 11 ARG A 53 -76.15 -95.58 REMARK 500 11 ASP A 80 -58.31 67.82 REMARK 500 12 PRO A 7 84.91 -65.87 REMARK 500 12 PRO A 10 99.24 -52.27 REMARK 500 12 ASP A 80 -57.89 69.10 REMARK 500 13 SER A 6 -57.98 -161.00 REMARK 500 13 LYS A 8 -85.31 61.71 REMARK 500 13 GLU A 9 -89.35 85.94 REMARK 500 13 VAL A 44 140.84 -173.19 REMARK 500 13 ARG A 53 -73.09 -94.16 REMARK 500 14 SER A 6 132.01 67.44 REMARK 500 14 PRO A 7 105.43 -44.43 REMARK 500 14 PRO A 10 108.34 -43.67 REMARK 500 14 ARG A 53 -75.34 -93.64 REMARK 500 15 ARG A 53 -80.49 -92.92 REMARK 500 16 ARG A 53 -80.89 -92.43 REMARK 500 16 ASP A 80 -57.17 71.79 REMARK 500 17 GLU A 9 -64.78 -137.87 REMARK 500 17 THR A 25 94.54 -68.77 REMARK 500 REMARK 500 THIS ENTRY HAS 60 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 34079 RELATED DB: BMRB REMARK 900 SOLUTION NMR STRUCTURE OF HNRNP A1 RRM1 IN COMPLEX WITH 5'-UUAGGUC- REMARK 900 3' RNA REMARK 900 RELATED ID: 5MPL RELATED DB: PDB REMARK 900 HNRNP A1 RRM2 IN COMPLEX WITH 5'-UCAGUU-3' RNA DBREF 5MPG A 2 97 UNP P09651 ROA1_HUMAN 2 97 DBREF 5MPG B 1 7 PDB 5MPG 5MPG 1 7 SEQADV 5MPG ALA A 1 UNP P09651 EXPRESSION TAG SEQRES 1 A 97 ALA SER LYS SER GLU SER PRO LYS GLU PRO GLU GLN LEU SEQRES 2 A 97 ARG LYS LEU PHE ILE GLY GLY LEU SER PHE GLU THR THR SEQRES 3 A 97 ASP GLU SER LEU ARG SER HIS PHE GLU GLN TRP GLY THR SEQRES 4 A 97 LEU THR ASP CYS VAL VAL MET ARG ASP PRO ASN THR LYS SEQRES 5 A 97 ARG SER ARG GLY PHE GLY PHE VAL THR TYR ALA THR VAL SEQRES 6 A 97 GLU GLU VAL ASP ALA ALA MET ASN ALA ARG PRO HIS LYS SEQRES 7 A 97 VAL ASP GLY ARG VAL VAL GLU PRO LYS ARG ALA VAL SER SEQRES 8 A 97 ARG GLU ASP SER GLN ARG SEQRES 1 B 7 U U A G G U C HELIX 1 AA1 PRO A 10 ARG A 14 1 5 HELIX 2 AA2 THR A 26 GLU A 35 1 10 HELIX 3 AA3 THR A 64 ALA A 74 1 11 HELIX 4 AA4 SER A 91 GLN A 96 1 6 SHEET 1 AA1 5 LEU A 40 VAL A 45 0 SHEET 2 AA1 5 PHE A 57 TYR A 62 -1 O PHE A 59 N VAL A 44 SHEET 3 AA1 5 LYS A 15 GLY A 19 -1 N ILE A 18 O GLY A 58 SHEET 4 AA1 5 ARG A 82 ARG A 88 -1 O LYS A 87 N PHE A 17 SHEET 5 AA1 5 HIS A 77 VAL A 79 -1 N VAL A 79 O ARG A 82 CISPEP 1 ARG A 75 PRO A 76 1 -0.92 CISPEP 2 ARG A 75 PRO A 76 2 1.40 CISPEP 3 ARG A 75 PRO A 76 3 -0.97 CISPEP 4 ARG A 75 PRO A 76 4 0.82 CISPEP 5 ARG A 75 PRO A 76 5 1.39 CISPEP 6 ARG A 75 PRO A 76 6 -1.52 CISPEP 7 ARG A 75 PRO A 76 7 5.36 CISPEP 8 ARG A 75 PRO A 76 8 1.83 CISPEP 9 ARG A 75 PRO A 76 9 2.92 CISPEP 10 ARG A 75 PRO A 76 10 -2.95 CISPEP 11 ARG A 75 PRO A 76 11 4.31 CISPEP 12 ARG A 75 PRO A 76 12 0.47 CISPEP 13 ARG A 75 PRO A 76 13 -2.47 CISPEP 14 ARG A 75 PRO A 76 14 1.72 CISPEP 15 ARG A 75 PRO A 76 15 0.62 CISPEP 16 ARG A 75 PRO A 76 16 2.10 CISPEP 17 ARG A 75 PRO A 76 17 -0.63 CISPEP 18 ARG A 75 PRO A 76 18 -1.03 CISPEP 19 ARG A 75 PRO A 76 19 2.95 CISPEP 20 ARG A 75 PRO A 76 20 0.17 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1