HEADER SIGNALING PROTEIN 21-DEC-16 5MR5 TITLE LIGAND-RECEPTOR COMPLEX. COMPND MOL_ID: 1; COMPND 2 MOLECULE: NEURTURIN; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: GDNF FAMILY RECEPTOR ALPHA-2; COMPND 7 CHAIN: C, D; COMPND 8 SYNONYM: GFR-ALPHA-2,GDNF RECEPTOR BETA,GDNFR-BETA,NEURTURIN RECEPTOR COMPND 9 ALPHA,NTNR-ALPHA,RET LIGAND 2,TGF-BETA-RELATED NEUROTROPHIC FACTOR COMPND 10 RECEPTOR 2; COMPND 11 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: NRTN; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 MOL_ID: 2; SOURCE 9 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 10 ORGANISM_COMMON: HUMAN; SOURCE 11 ORGANISM_TAXID: 9606; SOURCE 12 GENE: GFRA2, GDNFRB, RETL2, TRNR2; SOURCE 13 EXPRESSION_SYSTEM: CRICETULUS GRISEUS; SOURCE 14 EXPRESSION_SYSTEM_COMMON: CHINESE HAMSTER; SOURCE 15 EXPRESSION_SYSTEM_TAXID: 10029 KEYWDS COMPLEX, RECEPTOR, SIGNALLING, LIGAND-RECEPTOR COMPLEX, SIGNALING KEYWDS 2 PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR J.SANDMARK,L.OSTER,A.AAGAARD,R.ROTH,G.DAHL REVDAT 5 17-JAN-24 5MR5 1 REMARK REVDAT 4 25-APR-18 5MR5 1 JRNL REVDAT 3 21-FEB-18 5MR5 1 JRNL REVDAT 2 14-FEB-18 5MR5 1 JRNL REVDAT 1 17-JAN-18 5MR5 0 JRNL AUTH J.SANDMARK,G.DAHL,L.OSTER,B.XU,P.JOHANSSON,T.AKERUD, JRNL AUTH 2 A.AAGAARD,P.DAVIDSSON,J.M.BIGALKE,M.S.WINZELL,G.J.RAINEY, JRNL AUTH 3 R.G.ROTH JRNL TITL STRUCTURE AND BIOPHYSICAL CHARACTERIZATION OF THE HUMAN JRNL TITL 2 FULL-LENGTH NEURTURIN-GFRA2 COMPLEX: A ROLE FOR HEPARAN JRNL TITL 3 SULFATE IN SIGNALING. JRNL REF J. BIOL. CHEM. V. 293 5492 2018 JRNL REFN ESSN 1083-351X JRNL PMID 29414779 JRNL DOI 10.1074/JBC.RA117.000820 REMARK 2 REMARK 2 RESOLUTION. 2.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0135 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 30.28 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 89.2 REMARK 3 NUMBER OF REFLECTIONS : 54696 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.206 REMARK 3 R VALUE (WORKING SET) : 0.204 REMARK 3 FREE R VALUE : 0.243 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 2898 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.00 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.05 REMARK 3 REFLECTION IN BIN (WORKING SET) : 4000 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 89.06 REMARK 3 BIN R VALUE (WORKING SET) : 0.3120 REMARK 3 BIN FREE R VALUE SET COUNT : 226 REMARK 3 BIN FREE R VALUE : 0.3460 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4708 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 107 REMARK 3 SOLVENT ATOMS : 318 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 32.60 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.00000 REMARK 3 B22 (A**2) : -0.01000 REMARK 3 B33 (A**2) : 0.00000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.01000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.168 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.158 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): NULL REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): NULL REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.942 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.912 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4926 ; 0.009 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 4450 ; 0.000 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 6664 ; 1.283 ; 1.973 REMARK 3 BOND ANGLES OTHERS (DEGREES): 10198 ; 3.658 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 592 ; 5.609 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 256 ;32.431 ;21.758 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 826 ;17.328 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 74 ;16.954 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 703 ; 0.077 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 5568 ; 0.005 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 1228 ; 0.006 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2374 ; 1.761 ; 2.997 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 2373 ; 1.760 ; 2.996 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2964 ; 2.846 ; 4.486 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 2965 ; 2.846 ; 4.486 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2552 ; 2.387 ; 3.464 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 2552 ; 2.387 ; 3.464 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 3701 ; 3.904 ; 5.059 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 5721 ; 6.008 ;23.989 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 5614 ; 5.961 ;23.867 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 5MR5 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 21-DEC-16. REMARK 100 THE DEPOSITION ID IS D_1200002882. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 21-DEC-12 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU FR-E+ SUPERBRIGHT REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.54 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RIGAKU SATURN A200 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 60213 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.000 REMARK 200 RESOLUTION RANGE LOW (A) : 30.300 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 93.2 REMARK 200 DATA REDUNDANCY : 3.600 REMARK 200 R MERGE (I) : 0.09200 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 8.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.05 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.59000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: POLYALANINE MODEL OF 2V5E REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 63.68 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.39 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 2.0 M AMMONIUM SULFATE AND 0.1 M HEPES REMARK 280 PH 7.5, VAPOR DIFFUSION, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 60.15000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 10720 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 29480 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -210.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ALA A 96 REMARK 465 ARG A 97 REMARK 465 LEU A 98 REMARK 465 GLY A 99 REMARK 465 ALA B 96 REMARK 465 ARG B 97 REMARK 465 LEU B 98 REMARK 465 GLY B 99 REMARK 465 GLY C 147 REMARK 465 THR C 148 REMARK 465 GLY C 149 REMARK 465 ALA C 150 REMARK 465 ASP C 151 REMARK 465 PRO C 152 REMARK 465 VAL C 153 REMARK 465 VAL C 154 REMARK 465 SER C 155 REMARK 465 ALA C 156 REMARK 465 LYS C 157 REMARK 465 SER C 158 REMARK 465 ASN C 357 REMARK 465 GLY C 358 REMARK 465 THR C 359 REMARK 465 ASP C 360 REMARK 465 VAL C 361 REMARK 465 ASN C 362 REMARK 465 GLY D 147 REMARK 465 THR D 148 REMARK 465 GLY D 149 REMARK 465 ALA D 150 REMARK 465 ASP D 151 REMARK 465 PRO D 152 REMARK 465 VAL D 153 REMARK 465 VAL D 154 REMARK 465 SER D 155 REMARK 465 ALA D 156 REMARK 465 LYS D 157 REMARK 465 SER D 158 REMARK 465 ASN D 357 REMARK 465 GLY D 358 REMARK 465 THR D 359 REMARK 465 ASP D 360 REMARK 465 VAL D 361 REMARK 465 ASN D 362 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O THR D 281 O HOH D 501 1.85 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG A 155 57.88 -110.18 REMARK 500 ARG A 156 28.47 48.73 REMARK 500 GLU B 157 161.17 177.53 REMARK 500 TYR C 243 -59.77 -125.55 REMARK 500 GLU C 344 56.39 -140.07 REMARK 500 TYR D 243 -59.56 -126.47 REMARK 500 ASP D 304 47.30 -83.13 REMARK 500 MET D 305 39.09 -155.07 REMARK 500 SER D 312 30.98 -98.27 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 203 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 B 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 B 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 B 203 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 B 204 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 B 205 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL B 206 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 C 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 C 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 C 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 C 404 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 C 405 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 C 406 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 C 407 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL C 408 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 D 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AE1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 D 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AE2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 D 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AE3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 D 404 DBREF 5MR5 A 96 197 UNP Q99748 NRTN_HUMAN 96 197 DBREF 5MR5 B 96 197 UNP Q99748 NRTN_HUMAN 96 197 DBREF 5MR5 C 147 362 UNP O00451 GFRA2_HUMAN 147 362 DBREF 5MR5 D 147 362 UNP O00451 GFRA2_HUMAN 147 362 SEQRES 1 A 102 ALA ARG LEU GLY ALA ARG PRO CYS GLY LEU ARG GLU LEU SEQRES 2 A 102 GLU VAL ARG VAL SER GLU LEU GLY LEU GLY TYR ALA SER SEQRES 3 A 102 ASP GLU THR VAL LEU PHE ARG TYR CYS ALA GLY ALA CYS SEQRES 4 A 102 GLU ALA ALA ALA ARG VAL TYR ASP LEU GLY LEU ARG ARG SEQRES 5 A 102 LEU ARG GLN ARG ARG ARG LEU ARG ARG GLU ARG VAL ARG SEQRES 6 A 102 ALA GLN PRO CYS CYS ARG PRO THR ALA TYR GLU ASP GLU SEQRES 7 A 102 VAL SER PHE LEU ASP ALA HIS SER ARG TYR HIS THR VAL SEQRES 8 A 102 HIS GLU LEU SER ALA ARG GLU CYS ALA CYS VAL SEQRES 1 B 102 ALA ARG LEU GLY ALA ARG PRO CYS GLY LEU ARG GLU LEU SEQRES 2 B 102 GLU VAL ARG VAL SER GLU LEU GLY LEU GLY TYR ALA SER SEQRES 3 B 102 ASP GLU THR VAL LEU PHE ARG TYR CYS ALA GLY ALA CYS SEQRES 4 B 102 GLU ALA ALA ALA ARG VAL TYR ASP LEU GLY LEU ARG ARG SEQRES 5 B 102 LEU ARG GLN ARG ARG ARG LEU ARG ARG GLU ARG VAL ARG SEQRES 6 B 102 ALA GLN PRO CYS CYS ARG PRO THR ALA TYR GLU ASP GLU SEQRES 7 B 102 VAL SER PHE LEU ASP ALA HIS SER ARG TYR HIS THR VAL SEQRES 8 B 102 HIS GLU LEU SER ALA ARG GLU CYS ALA CYS VAL SEQRES 1 C 216 GLY THR GLY ALA ASP PRO VAL VAL SER ALA LYS SER ASN SEQRES 2 C 216 HIS CYS LEU ASP ALA ALA LYS ALA CYS ASN LEU ASN ASP SEQRES 3 C 216 ASN CYS LYS LYS LEU ARG SER SER TYR ILE SER ILE CYS SEQRES 4 C 216 ASN ARG GLU ILE SER PRO THR GLU ARG CYS ASN ARG ARG SEQRES 5 C 216 LYS CYS HIS LYS ALA LEU ARG GLN PHE PHE ASP ARG VAL SEQRES 6 C 216 PRO SER GLU TYR THR TYR ARG MET LEU PHE CYS SER CYS SEQRES 7 C 216 GLN ASP GLN ALA CYS ALA GLU ARG ARG ARG GLN THR ILE SEQRES 8 C 216 LEU PRO SER CYS SER TYR GLU ASP LYS GLU LYS PRO ASN SEQRES 9 C 216 CYS LEU ASP LEU ARG GLY VAL CYS ARG THR ASP HIS LEU SEQRES 10 C 216 CYS ARG SER ARG LEU ALA ASP PHE HIS ALA ASN CYS ARG SEQRES 11 C 216 ALA SER TYR GLN THR VAL THR SER CYS PRO ALA ASP ASN SEQRES 12 C 216 TYR GLN ALA CYS LEU GLY SER TYR ALA GLY MET ILE GLY SEQRES 13 C 216 PHE ASP MET THR PRO ASN TYR VAL ASP SER SER PRO THR SEQRES 14 C 216 GLY ILE VAL VAL SER PRO TRP CYS SER CYS ARG GLY SER SEQRES 15 C 216 GLY ASN MET GLU GLU GLU CYS GLU LYS PHE LEU ARG ASP SEQRES 16 C 216 PHE THR GLU ASN PRO CYS LEU ARG ASN ALA ILE GLN ALA SEQRES 17 C 216 PHE GLY ASN GLY THR ASP VAL ASN SEQRES 1 D 216 GLY THR GLY ALA ASP PRO VAL VAL SER ALA LYS SER ASN SEQRES 2 D 216 HIS CYS LEU ASP ALA ALA LYS ALA CYS ASN LEU ASN ASP SEQRES 3 D 216 ASN CYS LYS LYS LEU ARG SER SER TYR ILE SER ILE CYS SEQRES 4 D 216 ASN ARG GLU ILE SER PRO THR GLU ARG CYS ASN ARG ARG SEQRES 5 D 216 LYS CYS HIS LYS ALA LEU ARG GLN PHE PHE ASP ARG VAL SEQRES 6 D 216 PRO SER GLU TYR THR TYR ARG MET LEU PHE CYS SER CYS SEQRES 7 D 216 GLN ASP GLN ALA CYS ALA GLU ARG ARG ARG GLN THR ILE SEQRES 8 D 216 LEU PRO SER CYS SER TYR GLU ASP LYS GLU LYS PRO ASN SEQRES 9 D 216 CYS LEU ASP LEU ARG GLY VAL CYS ARG THR ASP HIS LEU SEQRES 10 D 216 CYS ARG SER ARG LEU ALA ASP PHE HIS ALA ASN CYS ARG SEQRES 11 D 216 ALA SER TYR GLN THR VAL THR SER CYS PRO ALA ASP ASN SEQRES 12 D 216 TYR GLN ALA CYS LEU GLY SER TYR ALA GLY MET ILE GLY SEQRES 13 D 216 PHE ASP MET THR PRO ASN TYR VAL ASP SER SER PRO THR SEQRES 14 D 216 GLY ILE VAL VAL SER PRO TRP CYS SER CYS ARG GLY SER SEQRES 15 D 216 GLY ASN MET GLU GLU GLU CYS GLU LYS PHE LEU ARG ASP SEQRES 16 D 216 PHE THR GLU ASN PRO CYS LEU ARG ASN ALA ILE GLN ALA SEQRES 17 D 216 PHE GLY ASN GLY THR ASP VAL ASN HET SO4 A 201 5 HET SO4 A 202 5 HET SO4 A 203 5 HET SO4 B 201 5 HET SO4 B 202 5 HET SO4 B 203 5 HET SO4 B 204 5 HET SO4 B 205 5 HET GOL B 206 6 HET SO4 C 401 5 HET SO4 C 402 5 HET SO4 C 403 5 HET SO4 C 404 5 HET SO4 C 405 5 HET SO4 C 406 5 HET SO4 C 407 5 HET GOL C 408 6 HET SO4 D 401 5 HET SO4 D 402 5 HET SO4 D 403 5 HET SO4 D 404 5 HETNAM SO4 SULFATE ION HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 5 SO4 19(O4 S 2-) FORMUL 13 GOL 2(C3 H8 O3) FORMUL 26 HOH *318(H2 O) HELIX 1 AA1 SER A 113 LEU A 115 5 3 HELIX 2 AA2 ARG A 139 ARG A 151 1 13 HELIX 3 AA3 SER B 113 GLY B 116 5 4 HELIX 4 AA4 ARG B 139 ARG B 151 1 13 HELIX 5 AA5 HIS C 160 LEU C 170 1 11 HELIX 6 AA6 ASN C 171 ARG C 187 1 17 HELIX 7 AA7 ASN C 196 VAL C 211 1 16 HELIX 8 AA8 PRO C 212 PHE C 221 1 10 HELIX 9 AA9 ASP C 226 THR C 236 1 11 HELIX 10 AB1 LEU C 238 TYR C 243 1 6 HELIX 11 AB2 ASN C 250 ASP C 261 1 12 HELIX 12 AB3 ASP C 261 ARG C 276 1 16 HELIX 13 AB4 CYS C 285 ASP C 288 5 4 HELIX 14 AB5 ASN C 289 GLY C 299 1 11 HELIX 15 AB6 SER C 328 ASN C 330 5 3 HELIX 16 AB7 MET C 331 GLU C 344 1 14 HELIX 17 AB8 ASN C 345 GLY C 356 1 12 HELIX 18 AB9 HIS D 160 LEU D 170 1 11 HELIX 19 AC1 ASN D 171 ARG D 187 1 17 HELIX 20 AC2 ASN D 196 VAL D 211 1 16 HELIX 21 AC3 PRO D 212 PHE D 221 1 10 HELIX 22 AC4 ASP D 226 THR D 236 1 11 HELIX 23 AC5 LEU D 238 TYR D 243 1 6 HELIX 24 AC6 ASN D 250 THR D 260 1 11 HELIX 25 AC7 ASP D 261 CYS D 275 1 15 HELIX 26 AC8 CYS D 285 ASP D 288 5 4 HELIX 27 AC9 ASN D 289 GLY D 299 1 11 HELIX 28 AD1 SER D 328 ASN D 330 5 3 HELIX 29 AD2 MET D 331 GLU D 344 1 14 HELIX 30 AD3 ASN D 345 GLY D 356 1 12 SHEET 1 AA1 2 GLY A 104 ARG A 111 0 SHEET 2 AA1 2 THR A 124 ALA A 131 -1 O PHE A 127 N LEU A 108 SHEET 1 AA2 2 CYS A 165 TYR A 170 0 SHEET 2 AA2 2 ALA A 191 CYS A 196 -1 O ARG A 192 N ALA A 169 SHEET 1 AA3 2 VAL A 174 LEU A 177 0 SHEET 2 AA3 2 TYR A 183 VAL A 186 -1 O HIS A 184 N PHE A 176 SHEET 1 AA4 2 GLY B 104 ARG B 111 0 SHEET 2 AA4 2 THR B 124 ALA B 131 -1 O PHE B 127 N LEU B 108 SHEET 1 AA5 2 CYS B 165 TYR B 170 0 SHEET 2 AA5 2 ALA B 191 CYS B 196 -1 O ARG B 192 N ALA B 169 SHEET 1 AA6 2 VAL B 174 LEU B 177 0 SHEET 2 AA6 2 TYR B 183 VAL B 186 -1 O VAL B 186 N VAL B 174 SHEET 1 AA7 2 PRO C 307 TYR C 309 0 SHEET 2 AA7 2 VAL C 319 PRO C 321 -1 O SER C 320 N ASN C 308 SHEET 1 AA8 2 PRO D 307 TYR D 309 0 SHEET 2 AA8 2 VAL D 319 PRO D 321 -1 O SER D 320 N ASN D 308 SSBOND 1 CYS A 103 CYS A 165 1555 1555 2.04 SSBOND 2 CYS A 130 CYS A 194 1555 1555 2.05 SSBOND 3 CYS A 134 CYS A 196 1555 1555 2.03 SSBOND 4 CYS A 164 CYS B 164 1555 1555 2.08 SSBOND 5 CYS B 103 CYS B 165 1555 1555 2.03 SSBOND 6 CYS B 130 CYS B 194 1555 1555 2.01 SSBOND 7 CYS B 134 CYS B 196 1555 1555 2.02 SSBOND 8 CYS C 161 CYS C 222 1555 1555 2.01 SSBOND 9 CYS C 168 CYS C 174 1555 1555 2.02 SSBOND 10 CYS C 185 CYS C 200 1555 1555 2.06 SSBOND 11 CYS C 195 CYS C 241 1555 1555 2.02 SSBOND 12 CYS C 224 CYS C 229 1555 1555 2.07 SSBOND 13 CYS C 251 CYS C 323 1555 1555 2.06 SSBOND 14 CYS C 258 CYS C 264 1555 1555 2.05 SSBOND 15 CYS C 275 CYS C 293 1555 1555 2.04 SSBOND 16 CYS C 285 CYS C 347 1555 1555 2.02 SSBOND 17 CYS C 325 CYS C 335 1555 1555 2.05 SSBOND 18 CYS D 161 CYS D 222 1555 1555 2.02 SSBOND 19 CYS D 168 CYS D 174 1555 1555 2.06 SSBOND 20 CYS D 185 CYS D 200 1555 1555 2.07 SSBOND 21 CYS D 195 CYS D 241 1555 1555 2.02 SSBOND 22 CYS D 224 CYS D 229 1555 1555 2.06 SSBOND 23 CYS D 251 CYS D 323 1555 1555 2.07 SSBOND 24 CYS D 258 CYS D 264 1555 1555 2.08 SSBOND 25 CYS D 275 CYS D 293 1555 1555 2.04 SSBOND 26 CYS D 285 CYS D 347 1555 1555 2.03 SSBOND 27 CYS D 325 CYS D 335 1555 1555 2.06 SITE 1 AC1 4 ARG A 158 ARG A 160 ARG B 158 ARG B 160 SITE 1 AC2 6 ARG A 149 ARG A 158 ARG A 160 ALA A 161 SITE 2 AC2 6 GLN A 162 HOH A 311 SITE 1 AC3 3 ARG A 101 ARG A 106 GLU A 107 SITE 1 AC4 6 ARG B 149 ARG B 158 ARG B 160 ALA B 161 SITE 2 AC4 6 GLN B 162 HOH B 329 SITE 1 AC5 9 ARG A 151 SER B 113 GLU B 114 HOH B 311 SITE 2 AC5 9 HOH B 315 HOH B 321 HOH B 344 HIS D 262 SITE 3 AC5 9 ARG D 265 SITE 1 AC6 3 ARG B 101 ARG B 106 GLU B 107 SITE 1 AC7 3 ARG B 101 PRO B 102 HOH B 302 SITE 1 AC8 3 ARG B 149 GLN B 150 HOH B 327 SITE 1 AC9 8 GLU B 171 ASP B 172 GLU B 173 ARG B 192 SITE 2 AC9 8 HOH B 301 HOH B 338 LYS D 175 LYS D 176 SITE 1 AD1 4 ALA C 277 HOH C 517 HOH C 552 HOH C 567 SITE 1 AD2 2 SER C 213 HOH C 537 SITE 1 AD3 2 LEU C 263 ARG C 267 SITE 1 AD4 2 ARG C 276 HOH C 563 SITE 1 AD5 2 ASN C 196 ARG C 198 SITE 1 AD6 5 LEU C 170 ASN C 171 ASP C 172 HOH C 503 SITE 2 AD6 5 HOH C 518 SITE 1 AD7 3 ASP C 226 GLN C 227 HOH C 532 SITE 1 AD8 6 GLU A 171 ASP A 172 ARG A 192 LYS C 175 SITE 2 AD8 6 LYS C 176 HOH C 549 SITE 1 AD9 4 LEU D 170 ASN D 171 ASP D 172 HOH D 507 SITE 1 AE1 3 ASP D 226 GLN D 227 HOH D 547 SITE 1 AE2 2 ARG D 267 HOH D 506 SITE 1 AE3 5 ARG D 234 GLN D 235 SER D 240 GLU D 244 SITE 2 AE3 5 HOH D 505 CRYST1 52.070 120.300 78.670 90.00 98.46 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.019205 0.000000 0.002856 0.00000 SCALE2 0.000000 0.008313 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012851 0.00000