HEADER DNA BINDING PROTEIN 22-DEC-16 5MRG TITLE SOLUTION STRUCTURE OF TDP-43 (RESIDUES 1-102) COMPND MOL_ID: 1; COMPND 2 MOLECULE: TAR DNA-BINDING PROTEIN 43; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: N-TERMINAL DOMAIN, UNP RESIDUES 1-102; COMPND 5 SYNONYM: TDP-43; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: TARDBP, TDP43; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS STRUCTURE FROM CYANA 3.97, DNA BINDING PROTEIN EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR M.MOMPEAN,V.ROMANO,D.PANTOJA-UCEDA,C.STUANI,F.E.BARALLE,D.V.LAURENTS REVDAT 3 26-JUL-17 5MRG 1 REVDAT 2 14-JUN-17 5MRG 1 JRNL REVDAT 1 07-JUN-17 5MRG 0 JRNL AUTH M.MOMPEAN,V.ROMANO,D.PANTOJA-UCEDA,C.STUANI,F.E.BARALLE, JRNL AUTH 2 E.BURATTI,D.V.LAURENTS JRNL TITL POINT MUTATIONS IN THE N-TERMINAL DOMAIN OF TRANSACTIVE JRNL TITL 2 RESPONSE DNA-BINDING PROTEIN 43 KDA (TDP-43) COMPROMISE ITS JRNL TITL 3 STABILITY, DIMERIZATION, AND FUNCTIONS. JRNL REF J. BIOL. CHEM. V. 292 11992 2017 JRNL REFN ESSN 1083-351X JRNL PMID 28566288 JRNL DOI 10.1074/JBC.M117.775965 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CYANA 3.97 REMARK 3 AUTHORS : GUNTERT, MUMENTHALER AND WUTHRICH REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: REFINED WITH AMBER REMARK 4 REMARK 4 5MRG COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 22-DEC-16. REMARK 100 THE DEPOSITION ID IS D_1200002888. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 3.9 REMARK 210 IONIC STRENGTH : 0 REMARK 210 PRESSURE : 1 ATM REMARK 210 SAMPLE CONTENTS : 0.35 MM 13C15N TDP-43(1-102), REMARK 210 90% H2O/10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-1H NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 800 MHZ REMARK 210 SPECTROMETER MODEL : AVANCEII REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NULL REMARK 210 METHOD USED : MOLECULAR DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : TARGET FUNCTION REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 0 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 10290 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: 0.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 SER A 4 -47.69 -152.36 REMARK 500 1 HIS A 5 -174.73 60.85 REMARK 500 1 HIS A 6 53.25 -172.22 REMARK 500 1 HIS A 8 63.21 -168.65 REMARK 500 1 HIS A 9 -66.32 -109.16 REMARK 500 1 HIS A 10 177.38 58.89 REMARK 500 1 SER A 12 -175.94 57.19 REMARK 500 1 MET A 13 -35.98 -178.17 REMARK 500 1 SER A 14 -76.10 69.16 REMARK 500 1 THR A 37 -171.90 -66.13 REMARK 500 1 PHE A 47 75.80 -112.73 REMARK 500 1 ARG A 64 -174.44 -59.04 REMARK 500 1 PRO A 76 -174.15 -69.75 REMARK 500 1 LYS A 91 -37.97 -178.05 REMARK 500 1 ASN A 93 -56.77 -154.61 REMARK 500 1 LYS A 94 -75.38 69.16 REMARK 500 1 ARG A 95 41.83 39.38 REMARK 500 1 MET A 97 59.21 -154.65 REMARK 500 1 ASP A 98 115.31 -164.95 REMARK 500 2 HIS A 5 81.25 -151.69 REMARK 500 2 GLU A 15 -169.52 -113.01 REMARK 500 2 PHE A 47 76.33 -116.70 REMARK 500 2 ALA A 50 107.69 -51.94 REMARK 500 2 CYS A 62 125.40 66.28 REMARK 500 2 MET A 63 -35.20 -179.64 REMARK 500 2 PRO A 76 -172.88 -69.72 REMARK 500 2 TYR A 89 69.85 -116.78 REMARK 500 2 ALA A 102 173.46 63.35 REMARK 500 2 SER A 103 -73.10 -134.34 REMARK 500 2 SER A 104 -179.48 -178.76 REMARK 500 2 VAL A 112 97.24 61.61 REMARK 500 2 GLN A 113 -65.47 -104.02 REMARK 500 3 SER A 4 93.89 59.57 REMARK 500 3 HIS A 7 -56.23 -144.84 REMARK 500 3 HIS A 9 168.64 62.25 REMARK 500 3 SER A 12 -174.30 55.89 REMARK 500 3 GLU A 15 -169.41 -114.70 REMARK 500 3 THR A 37 -170.95 -69.34 REMARK 500 3 PHE A 47 76.27 -116.62 REMARK 500 3 ALA A 50 105.66 -52.69 REMARK 500 3 CYS A 62 100.40 63.46 REMARK 500 3 MET A 63 -64.45 -159.89 REMARK 500 3 ARG A 64 -176.62 -58.90 REMARK 500 3 PRO A 76 -174.32 -69.78 REMARK 500 3 PRO A 90 -170.93 -69.84 REMARK 500 3 ASP A 92 -74.72 -61.77 REMARK 500 3 ARG A 95 -52.21 -178.02 REMARK 500 3 MET A 97 -60.77 -131.85 REMARK 500 3 ASP A 98 94.44 61.52 REMARK 500 3 ALA A 102 105.84 63.78 REMARK 500 REMARK 500 THIS ENTRY HAS 331 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 34081 RELATED DB: BMRB REMARK 900 SOLUTION STRUCTURE OF TDP-43 (RESIDUES 1-102) DBREF 5MRG A 13 114 UNP Q13148 TADBP_HUMAN 1 102 SEQADV 5MRG MET A 1 UNP Q13148 INITIATING METHIONINE SEQADV 5MRG ALA A 2 UNP Q13148 EXPRESSION TAG SEQADV 5MRG GLY A 3 UNP Q13148 EXPRESSION TAG SEQADV 5MRG SER A 4 UNP Q13148 EXPRESSION TAG SEQADV 5MRG HIS A 5 UNP Q13148 EXPRESSION TAG SEQADV 5MRG HIS A 6 UNP Q13148 EXPRESSION TAG SEQADV 5MRG HIS A 7 UNP Q13148 EXPRESSION TAG SEQADV 5MRG HIS A 8 UNP Q13148 EXPRESSION TAG SEQADV 5MRG HIS A 9 UNP Q13148 EXPRESSION TAG SEQADV 5MRG HIS A 10 UNP Q13148 EXPRESSION TAG SEQADV 5MRG GLY A 11 UNP Q13148 EXPRESSION TAG SEQADV 5MRG SER A 12 UNP Q13148 EXPRESSION TAG SEQRES 1 A 114 MET ALA GLY SER HIS HIS HIS HIS HIS HIS GLY SER MET SEQRES 2 A 114 SER GLU TYR ILE ARG VAL THR GLU ASP GLU ASN ASP GLU SEQRES 3 A 114 PRO ILE GLU ILE PRO SER GLU ASP ASP GLY THR VAL LEU SEQRES 4 A 114 LEU SER THR VAL THR ALA GLN PHE PRO GLY ALA CYS GLY SEQRES 5 A 114 LEU ARG TYR ARG ASN PRO VAL SER GLN CYS MET ARG GLY SEQRES 6 A 114 VAL ARG LEU VAL GLU GLY ILE LEU HIS ALA PRO ASP ALA SEQRES 7 A 114 GLY TRP GLY ASN LEU VAL TYR VAL VAL ASN TYR PRO LYS SEQRES 8 A 114 ASP ASN LYS ARG LYS MET ASP GLU THR ASP ALA SER SER SEQRES 9 A 114 ALA VAL LYS VAL LYS ARG ALA VAL GLN LYS HELIX 1 AA1 LEU A 39 PHE A 47 1 9 SHEET 1 AA1 2 TYR A 16 VAL A 19 0 SHEET 2 AA1 2 ILE A 28 PRO A 31 -1 O ILE A 30 N ILE A 17 SHEET 1 AA2 2 GLY A 52 LEU A 53 0 SHEET 2 AA2 2 VAL A 87 ASN A 88 -1 O ASN A 88 N GLY A 52 SHEET 1 AA3 2 ARG A 67 VAL A 69 0 SHEET 2 AA3 2 ILE A 72 HIS A 74 -1 O ILE A 72 N VAL A 69 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1