HEADER SIGNALING PROTEIN 23-DEC-16 5MRH
TITLE CRYSTAL STRUCTURE OF THE VPS10P DOMAIN OF HUMAN SORTILIN/NTS3 IN
TITLE 2 COMPLEX WITH TRIAZOLONE 1
COMPND MOL_ID: 1;
COMPND 2 MOLECULE: SORTILIN;
COMPND 3 CHAIN: A;
COMPND 4 SYNONYM: 100 KDA NT RECEPTOR,GLYCOPROTEIN 95,GP95,NEUROTENSIN
COMPND 5 RECEPTOR 3,NTR3;
COMPND 6 ENGINEERED: YES
SOURCE MOL_ID: 1;
SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS;
SOURCE 3 ORGANISM_COMMON: HUMAN;
SOURCE 4 ORGANISM_TAXID: 9606;
SOURCE 5 GENE: SORT1;
SOURCE 6 EXPRESSION_SYSTEM: HOMO SAPIENS;
SOURCE 7 EXPRESSION_SYSTEM_COMMON: HUMAN;
SOURCE 8 EXPRESSION_SYSTEM_TAXID: 9606;
SOURCE 9 EXPRESSION_SYSTEM_CELL_LINE: HEK293
KEYWDS RECEPTOR, VSP10P, SORTILIN, SIGNALING PROTEIN
EXPDTA X-RAY DIFFRACTION
AUTHOR J.L.ANDERSEN,D.STRANDBYGAARD,S.THIRUP
REVDAT 5 13-NOV-24 5MRH 1 REMARK
REVDAT 4 17-JAN-24 5MRH 1 HETSYN
REVDAT 3 29-JUL-20 5MRH 1 COMPND REMARK HETNAM LINK
REVDAT 3 2 1 SITE ATOM
REVDAT 2 09-AUG-17 5MRH 1 JRNL REMARK
REVDAT 1 17-MAY-17 5MRH 0
JRNL AUTH J.L.ANDERSEN,S.LINDBERG,M.LANGGARD,P.J.MALTAS,L.C.B.RONN,
JRNL AUTH 2 C.BUNDGAARD,D.STRANDBYGAARD,S.THIRUP,S.P.WATSON
JRNL TITL THE IDENTIFICATION OF NOVEL ACID ISOSTERE BASED INHIBITORS
JRNL TITL 2 OF THE VPS10P FAMILY SORTING RECEPTOR SORTILIN.
JRNL REF BIOORG. MED. CHEM. LETT. V. 27 2629 2017
JRNL REFN ESSN 1464-3405
JRNL PMID 28462834
JRNL DOI 10.1016/J.BMCL.2017.02.028
REMARK 2
REMARK 2 RESOLUTION. 2.50 ANGSTROMS.
REMARK 3
REMARK 3 REFINEMENT.
REMARK 3 PROGRAM : PHENIX (DEV_2614: ???)
REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN
REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE,
REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER,
REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY,
REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON,
REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI,
REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT
REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART
REMARK 3
REMARK 3 REFINEMENT TARGET : NULL
REMARK 3
REMARK 3 DATA USED IN REFINEMENT.
REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.50
REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 40.13
REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350
REMARK 3 COMPLETENESS FOR RANGE (%) : 98.1
REMARK 3 NUMBER OF REFLECTIONS : 38072
REMARK 3
REMARK 3 FIT TO DATA USED IN REFINEMENT.
REMARK 3 R VALUE (WORKING + TEST SET) : 0.212
REMARK 3 R VALUE (WORKING SET) : 0.211
REMARK 3 FREE R VALUE : 0.233
REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000
REMARK 3 FREE R VALUE TEST SET COUNT : 1903
REMARK 3
REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS).
REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE
REMARK 3 1 40.1383 - 6.0191 0.91 2480 131 0.1999 0.1776
REMARK 3 2 6.0191 - 4.7801 0.99 2633 138 0.1715 0.1995
REMARK 3 3 4.7801 - 4.1766 0.99 2627 138 0.1597 0.1758
REMARK 3 4 4.1766 - 3.7950 0.98 2552 135 0.1942 0.2574
REMARK 3 5 3.7950 - 3.5232 0.98 2578 136 0.2114 0.2476
REMARK 3 6 3.5232 - 3.3156 0.98 2586 136 0.2393 0.2629
REMARK 3 7 3.3156 - 3.1496 0.99 2616 137 0.2486 0.2992
REMARK 3 8 3.1496 - 3.0125 0.99 2577 137 0.2644 0.2961
REMARK 3 9 3.0125 - 2.8966 0.99 2597 136 0.2664 0.2723
REMARK 3 10 2.8966 - 2.7967 0.99 2582 135 0.2857 0.3489
REMARK 3 11 2.7967 - 2.7092 0.99 2617 138 0.2950 0.3003
REMARK 3 12 2.7092 - 2.6318 0.98 2575 135 0.3228 0.3757
REMARK 3 13 2.6318 - 2.5625 0.99 2590 137 0.3310 0.4042
REMARK 3 14 2.5625 - 2.5000 0.99 2559 134 0.3693 0.3983
REMARK 3
REMARK 3 BULK SOLVENT MODELLING.
REMARK 3 METHOD USED : NULL
REMARK 3 SOLVENT RADIUS : 1.11
REMARK 3 SHRINKAGE RADIUS : 0.90
REMARK 3 K_SOL : NULL
REMARK 3 B_SOL : NULL
REMARK 3
REMARK 3 ERROR ESTIMATES.
REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.380
REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 30.640
REMARK 3
REMARK 3 B VALUES.
REMARK 3 FROM WILSON PLOT (A**2) : 71.00
REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL
REMARK 3 OVERALL ANISOTROPIC B VALUE.
REMARK 3 B11 (A**2) : NULL
REMARK 3 B22 (A**2) : NULL
REMARK 3 B33 (A**2) : NULL
REMARK 3 B12 (A**2) : NULL
REMARK 3 B13 (A**2) : NULL
REMARK 3 B23 (A**2) : NULL
REMARK 3
REMARK 3 TWINNING INFORMATION.
REMARK 3 FRACTION: NULL
REMARK 3 OPERATOR: NULL
REMARK 3
REMARK 3 DEVIATIONS FROM IDEAL VALUES.
REMARK 3 RMSD COUNT
REMARK 3 BOND : 0.004 5227
REMARK 3 ANGLE : 0.936 7084
REMARK 3 CHIRALITY : 0.057 778
REMARK 3 PLANARITY : 0.008 905
REMARK 3 DIHEDRAL : 17.039 3078
REMARK 3
REMARK 3 TLS DETAILS
REMARK 3 NUMBER OF TLS GROUPS : 7
REMARK 3 TLS GROUP : 1
REMARK 3 SELECTION: CHAIN 'A' AND (RESID 55 THROUGH 193 )
REMARK 3 ORIGIN FOR THE GROUP (A): -16.5160 32.4886 41.8724
REMARK 3 T TENSOR
REMARK 3 T11: 1.0638 T22: 1.0414
REMARK 3 T33: 0.6168 T12: -0.3130
REMARK 3 T13: -0.1922 T23: -0.0357
REMARK 3 L TENSOR
REMARK 3 L11: 2.2041 L22: 5.3475
REMARK 3 L33: 3.0335 L12: -1.4526
REMARK 3 L13: -0.4355 L23: -0.4655
REMARK 3 S TENSOR
REMARK 3 S11: 0.1183 S12: -0.7316 S13: -0.0601
REMARK 3 S21: 1.0358 S22: 0.0977 S23: -0.4115
REMARK 3 S31: -0.2734 S32: 0.5807 S33: -0.2809
REMARK 3 TLS GROUP : 2
REMARK 3 SELECTION: CHAIN 'A' AND (RESID 194 THROUGH 352 )
REMARK 3 ORIGIN FOR THE GROUP (A): -26.6767 45.5908 15.6108
REMARK 3 T TENSOR
REMARK 3 T11: 0.7696 T22: 0.5138
REMARK 3 T33: 0.6381 T12: 0.0763
REMARK 3 T13: 0.1661 T23: 0.0804
REMARK 3 L TENSOR
REMARK 3 L11: 2.4747 L22: 3.2992
REMARK 3 L33: 5.1744 L12: 0.2985
REMARK 3 L13: 0.1030 L23: 0.8384
REMARK 3 S TENSOR
REMARK 3 S11: 0.2503 S12: 0.4214 S13: 0.4733
REMARK 3 S21: -0.0537 S22: -0.1496 S23: 0.0188
REMARK 3 S31: -1.2970 S32: -0.3207 S33: -0.0653
REMARK 3 TLS GROUP : 3
REMARK 3 SELECTION: CHAIN 'A' AND (RESID 353 THROUGH 397 )
REMARK 3 ORIGIN FOR THE GROUP (A): -29.7489 21.7990 10.5243
REMARK 3 T TENSOR
REMARK 3 T11: 0.4665 T22: 0.9338
REMARK 3 T33: 0.5893 T12: -0.0579
REMARK 3 T13: 0.0707 T23: -0.0398
REMARK 3 L TENSOR
REMARK 3 L11: 2.7624 L22: 8.3117
REMARK 3 L33: 5.6382 L12: -1.7998
REMARK 3 L13: -1.1662 L23: -1.9756
REMARK 3 S TENSOR
REMARK 3 S11: 0.1307 S12: 0.3280 S13: -0.0295
REMARK 3 S21: 0.1934 S22: -0.2158 S23: 0.4350
REMARK 3 S31: -0.2125 S32: -0.9041 S33: 0.0375
REMARK 3 TLS GROUP : 4
REMARK 3 SELECTION: CHAIN 'A' AND (RESID 398 THROUGH 470 )
REMARK 3 ORIGIN FOR THE GROUP (A): -27.8380 10.5882 15.1058
REMARK 3 T TENSOR
REMARK 3 T11: 0.5251 T22: 0.7092
REMARK 3 T33: 0.5995 T12: -0.1780
REMARK 3 T13: 0.0515 T23: -0.0379
REMARK 3 L TENSOR
REMARK 3 L11: 5.3037 L22: 4.9399
REMARK 3 L33: 4.3640 L12: 0.7717
REMARK 3 L13: -1.0057 L23: -0.4394
REMARK 3 S TENSOR
REMARK 3 S11: -0.0639 S12: 0.3870 S13: -0.7447
REMARK 3 S21: 0.1080 S22: -0.0943 S23: 0.0038
REMARK 3 S31: 0.8576 S32: -0.7145 S33: 0.0946
REMARK 3 TLS GROUP : 5
REMARK 3 SELECTION: CHAIN 'A' AND (RESID 471 THROUGH 627 )
REMARK 3 ORIGIN FOR THE GROUP (A): -11.8296 10.6323 25.0061
REMARK 3 T TENSOR
REMARK 3 T11: 0.7476 T22: 0.7408
REMARK 3 T33: 0.8284 T12: 0.0113
REMARK 3 T13: -0.1422 T23: 0.2044
REMARK 3 L TENSOR
REMARK 3 L11: 2.3619 L22: 1.8203
REMARK 3 L33: 5.1968 L12: -0.1491
REMARK 3 L13: -1.1364 L23: 0.0683
REMARK 3 S TENSOR
REMARK 3 S11: 0.1115 S12: -0.2845 S13: -0.3278
REMARK 3 S21: 0.6038 S22: -0.1535 S23: -0.7185
REMARK 3 S31: 0.6972 S32: 0.7810 S33: 0.1020
REMARK 3 TLS GROUP : 6
REMARK 3 SELECTION: CHAIN 'A' AND (RESID 628 THROUGH 662 )
REMARK 3 ORIGIN FOR THE GROUP (A): -20.8392 27.4395 -9.4898
REMARK 3 T TENSOR
REMARK 3 T11: 0.8313 T22: 1.6712
REMARK 3 T33: 1.1123 T12: 0.4075
REMARK 3 T13: 0.1878 T23: 0.0727
REMARK 3 L TENSOR
REMARK 3 L11: 4.1894 L22: 6.4741
REMARK 3 L33: 2.8238 L12: -5.1463
REMARK 3 L13: 1.0877 L23: -0.8742
REMARK 3 S TENSOR
REMARK 3 S11: 0.7924 S12: 0.2325 S13: -0.6705
REMARK 3 S21: -1.1731 S22: -0.9869 S23: 0.3190
REMARK 3 S31: -0.3593 S32: -0.6839 S33: 0.1100
REMARK 3 TLS GROUP : 7
REMARK 3 SELECTION: CHAIN 'A' AND (RESID 663 THROUGH 715 )
REMARK 3 ORIGIN FOR THE GROUP (A): -24.0401 39.7647 -10.9397
REMARK 3 T TENSOR
REMARK 3 T11: 0.7510 T22: 1.4631
REMARK 3 T33: 1.1454 T12: 0.2860
REMARK 3 T13: 0.3071 T23: 0.3477
REMARK 3 L TENSOR
REMARK 3 L11: 1.9631 L22: 0.7604
REMARK 3 L33: 0.5739 L12: -1.2039
REMARK 3 L13: 1.0762 L23: -0.6724
REMARK 3 S TENSOR
REMARK 3 S11: 0.6996 S12: 1.3046 S13: 0.5285
REMARK 3 S21: -0.4704 S22: -1.1694 S23: -0.8711
REMARK 3 S31: 0.0007 S32: 0.3663 S33: 0.1995
REMARK 3
REMARK 3 NCS DETAILS
REMARK 3 NUMBER OF NCS GROUPS : NULL
REMARK 3
REMARK 3 OTHER REFINEMENT REMARKS: NULL
REMARK 4
REMARK 4 5MRH COMPLIES WITH FORMAT V. 3.30, 13-JUL-11
REMARK 100
REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 25-DEC-16.
REMARK 100 THE DEPOSITION ID IS D_1200002892.
REMARK 200
REMARK 200 EXPERIMENTAL DETAILS
REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION
REMARK 200 DATE OF DATA COLLECTION : 10-FEB-13
REMARK 200 TEMPERATURE (KELVIN) : 100
REMARK 200 PH : 7.3
REMARK 200 NUMBER OF CRYSTALS USED : 1
REMARK 200
REMARK 200 SYNCHROTRON (Y/N) : Y
REMARK 200 RADIATION SOURCE : MAX II
REMARK 200 BEAMLINE : I911-3
REMARK 200 X-RAY GENERATOR MODEL : NULL
REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M
REMARK 200 WAVELENGTH OR RANGE (A) : 1.000
REMARK 200 MONOCHROMATOR : NULL
REMARK 200 OPTICS : NULL
REMARK 200
REMARK 200 DETECTOR TYPE : CCD
REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 225 MM CCD
REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS
REMARK 200 DATA SCALING SOFTWARE : AIMLESS
REMARK 200
REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 38075
REMARK 200 RESOLUTION RANGE HIGH (A) : 2.500
REMARK 200 RESOLUTION RANGE LOW (A) : 66.900
REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL
REMARK 200
REMARK 200 OVERALL.
REMARK 200 COMPLETENESS FOR RANGE (%) : 98.7
REMARK 200 DATA REDUNDANCY : 3.400
REMARK 200 R MERGE (I) : 0.06300
REMARK 200 R SYM (I) : NULL
REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 11.4000
REMARK 200
REMARK 200 IN THE HIGHEST RESOLUTION SHELL.
REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.50
REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.60
REMARK 200 COMPLETENESS FOR SHELL (%) : 98.9
REMARK 200 DATA REDUNDANCY IN SHELL : 3.60
REMARK 200 R MERGE FOR SHELL (I) : 0.95600
REMARK 200 R SYM FOR SHELL (I) : NULL
REMARK 200 <I/SIGMA(I)> FOR SHELL : 1.200
REMARK 200
REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH
REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT
REMARK 200 SOFTWARE USED: PHASER
REMARK 200 STARTING MODEL: 3F6K
REMARK 200
REMARK 200 REMARK: NULL
REMARK 280
REMARK 280 CRYSTAL
REMARK 280 SOLVENT CONTENT, VS (%): 65.40
REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.60
REMARK 280
REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M HEPES-TRIS PH=7.3 0.4 M SODIUM
REMARK 280 MALONATE 22 % (W/V) PEG 3350 8 (V/V) GLYCEROL, PH 7.3, VAPOR
REMARK 280 DIFFUSION, SITTING DROP, TEMPERATURE 292K
REMARK 290
REMARK 290 CRYSTALLOGRAPHIC SYMMETRY
REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1
REMARK 290
REMARK 290 SYMOP SYMMETRY
REMARK 290 NNNMMM OPERATOR
REMARK 290 1555 X,Y,Z
REMARK 290 2555 -X,Y,-Z
REMARK 290 3555 X+1/2,Y+1/2,Z
REMARK 290 4555 -X+1/2,Y+1/2,-Z
REMARK 290
REMARK 290 WHERE NNN -> OPERATOR NUMBER
REMARK 290 MMM -> TRANSLATION VECTOR
REMARK 290
REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS
REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM
REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY
REMARK 290 RELATED MOLECULES.
REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000
REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000
REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000
REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000
REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000
REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000
REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 81.19750
REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 39.11500
REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000
REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 81.19750
REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 39.11500
REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000
REMARK 290
REMARK 290 REMARK: NULL
REMARK 300
REMARK 300 BIOMOLECULE: 1
REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM
REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN
REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON
REMARK 300 BURIED SURFACE AREA.
REMARK 350
REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN
REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE
REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS
REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND
REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN.
REMARK 350
REMARK 350 BIOMOLECULE: 1
REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC
REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC
REMARK 350 SOFTWARE USED: PISA
REMARK 350 TOTAL BURIED SURFACE AREA: 1630 ANGSTROM**2
REMARK 350 SURFACE AREA OF THE COMPLEX: 30810 ANGSTROM**2
REMARK 350 CHANGE IN SOLVENT FREE ENERGY: 22.0 KCAL/MOL
REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C
REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000
REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000
REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000
REMARK 465
REMARK 465 MISSING RESIDUES
REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE
REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN
REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.)
REMARK 465
REMARK 465 M RES C SSSEQI
REMARK 465 SER A 45
REMARK 465 ALA A 46
REMARK 465 PRO A 47
REMARK 465 GLY A 48
REMARK 465 GLU A 49
REMARK 465 ASP A 50
REMARK 465 GLU A 51
REMARK 465 GLU A 52
REMARK 465 CYS A 53
REMARK 465 GLY A 54
REMARK 465 ASP A 73
REMARK 465 ASP A 74
REMARK 465 LEU A 75
REMARK 465 ARG A 76
REMARK 465 LEU A 101
REMARK 465 VAL A 102
REMARK 465 ILE A 103
REMARK 465 MET A 104
REMARK 465 THR A 105
REMARK 465 PHE A 106
REMARK 465 GLU A 557
REMARK 465 SER A 558
REMARK 465 PHE A 559
REMARK 465 LEU A 560
REMARK 465 THR A 561
REMARK 465 SER A 562
REMARK 465 GLN A 563
REMARK 465 TYR A 671
REMARK 465 GLY A 672
REMARK 465 ARG A 673
REMARK 465 GLU A 674
REMARK 465 GLU A 675
REMARK 465 LYS A 716
REMARK 465 GLN A 717
REMARK 465 ASN A 718
REMARK 465 SER A 719
REMARK 465 LYS A 720
REMARK 465 SER A 721
REMARK 465 ASN A 722
REMARK 465 SER A 723
REMARK 465 GLY A 724
REMARK 465 SER A 725
REMARK 465 ALA A 726
REMARK 465 MET A 727
REMARK 465 ILE A 728
REMARK 465 GLU A 729
REMARK 465 GLY A 730
REMARK 465 ARG A 731
REMARK 465 GLY A 732
REMARK 465 VAL A 733
REMARK 465 GLY A 734
REMARK 465 HIS A 735
REMARK 465 HIS A 736
REMARK 465 HIS A 737
REMARK 465 HIS A 738
REMARK 465 HIS A 739
REMARK 465 HIS A 740
REMARK 500
REMARK 500 GEOMETRY AND STEREOCHEMISTRY
REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT
REMARK 500
REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT.
REMARK 500
REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE
REMARK 500 O HOH A 931 O HOH A 956 2.18
REMARK 500
REMARK 500 REMARK: NULL
REMARK 500
REMARK 500 GEOMETRY AND STEREOCHEMISTRY
REMARK 500 SUBTOPIC: COVALENT BOND ANGLES
REMARK 500
REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES
REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE
REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN
REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE).
REMARK 500
REMARK 500 STANDARD TABLE:
REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1)
REMARK 500
REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999
REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996
REMARK 500
REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3
REMARK 500 CYS A 224 CA - CB - SG ANGL. DEV. = 10.8 DEGREES
REMARK 500
REMARK 500 REMARK: NULL
REMARK 500
REMARK 500 GEOMETRY AND STEREOCHEMISTRY
REMARK 500 SUBTOPIC: TORSION ANGLES
REMARK 500
REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS:
REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER;
REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE).
REMARK 500
REMARK 500 STANDARD TABLE:
REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2)
REMARK 500
REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI-
REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400
REMARK 500
REMARK 500 M RES CSSEQI PSI PHI
REMARK 500 ASN A 130 17.79 54.36
REMARK 500 GLU A 144 -87.22 -3.27
REMARK 500 ALA A 431 -146.92 -130.60
REMARK 500 ASP A 652 -154.50 10.44
REMARK 500
REMARK 500 REMARK: NULL
DBREF 5MRH A 45 723 UNP Q99523 SORT_HUMAN 78 756
SEQADV 5MRH MET A 617 UNP Q99523 VAL 650 CONFLICT
SEQADV 5MRH GLY A 724 UNP Q99523 EXPRESSION TAG
SEQADV 5MRH SER A 725 UNP Q99523 EXPRESSION TAG
SEQADV 5MRH ALA A 726 UNP Q99523 EXPRESSION TAG
SEQADV 5MRH MET A 727 UNP Q99523 EXPRESSION TAG
SEQADV 5MRH ILE A 728 UNP Q99523 EXPRESSION TAG
SEQADV 5MRH GLU A 729 UNP Q99523 EXPRESSION TAG
SEQADV 5MRH GLY A 730 UNP Q99523 EXPRESSION TAG
SEQADV 5MRH ARG A 731 UNP Q99523 EXPRESSION TAG
SEQADV 5MRH GLY A 732 UNP Q99523 EXPRESSION TAG
SEQADV 5MRH VAL A 733 UNP Q99523 EXPRESSION TAG
SEQADV 5MRH GLY A 734 UNP Q99523 EXPRESSION TAG
SEQADV 5MRH HIS A 735 UNP Q99523 EXPRESSION TAG
SEQADV 5MRH HIS A 736 UNP Q99523 EXPRESSION TAG
SEQADV 5MRH HIS A 737 UNP Q99523 EXPRESSION TAG
SEQADV 5MRH HIS A 738 UNP Q99523 EXPRESSION TAG
SEQADV 5MRH HIS A 739 UNP Q99523 EXPRESSION TAG
SEQADV 5MRH HIS A 740 UNP Q99523 EXPRESSION TAG
SEQRES 1 A 696 SER ALA PRO GLY GLU ASP GLU GLU CYS GLY ARG VAL ARG
SEQRES 2 A 696 ASP PHE VAL ALA LYS LEU ALA ASN ASN THR HIS GLN HIS
SEQRES 3 A 696 VAL PHE ASP ASP LEU ARG GLY SER VAL SER LEU SER TRP
SEQRES 4 A 696 VAL GLY ASP SER THR GLY VAL ILE LEU VAL LEU THR THR
SEQRES 5 A 696 PHE HIS VAL PRO LEU VAL ILE MET THR PHE GLY GLN SER
SEQRES 6 A 696 LYS LEU TYR ARG SER GLU ASP TYR GLY LYS ASN PHE LYS
SEQRES 7 A 696 ASP ILE THR ASP LEU ILE ASN ASN THR PHE ILE ARG THR
SEQRES 8 A 696 GLU PHE GLY MET ALA ILE GLY PRO GLU ASN SER GLY LYS
SEQRES 9 A 696 VAL VAL LEU THR ALA GLU VAL SER GLY GLY SER ARG GLY
SEQRES 10 A 696 GLY ARG ILE PHE ARG SER SER ASP PHE ALA LYS ASN PHE
SEQRES 11 A 696 VAL GLN THR ASP LEU PRO PHE HIS PRO LEU THR GLN MET
SEQRES 12 A 696 MET TYR SER PRO GLN ASN SER ASP TYR LEU LEU ALA LEU
SEQRES 13 A 696 SER THR GLU ASN GLY LEU TRP VAL SER LYS ASN PHE GLY
SEQRES 14 A 696 GLY LYS TRP GLU GLU ILE HIS LYS ALA VAL CYS LEU ALA
SEQRES 15 A 696 LYS TRP GLY SER ASP ASN THR ILE PHE PHE THR THR TYR
SEQRES 16 A 696 ALA ASN GLY SER CYS LYS ALA ASP LEU GLY ALA LEU GLU
SEQRES 17 A 696 LEU TRP ARG THR SER ASP LEU GLY LYS SER PHE LYS THR
SEQRES 18 A 696 ILE GLY VAL LYS ILE TYR SER PHE GLY LEU GLY GLY ARG
SEQRES 19 A 696 PHE LEU PHE ALA SER VAL MET ALA ASP LYS ASP THR THR
SEQRES 20 A 696 ARG ARG ILE HIS VAL SER THR ASP GLN GLY ASP THR TRP
SEQRES 21 A 696 SER MET ALA GLN LEU PRO SER VAL GLY GLN GLU GLN PHE
SEQRES 22 A 696 TYR SER ILE LEU ALA ALA ASN ASP ASP MET VAL PHE MET
SEQRES 23 A 696 HIS VAL ASP GLU PRO GLY ASP THR GLY PHE GLY THR ILE
SEQRES 24 A 696 PHE THR SER ASP ASP ARG GLY ILE VAL TYR SER LYS SER
SEQRES 25 A 696 LEU ASP ARG HIS LEU TYR THR THR THR GLY GLY GLU THR
SEQRES 26 A 696 ASP PHE THR ASN VAL THR SER LEU ARG GLY VAL TYR ILE
SEQRES 27 A 696 THR SER VAL LEU SER GLU ASP ASN SER ILE GLN THR MET
SEQRES 28 A 696 ILE THR PHE ASP GLN GLY GLY ARG TRP THR HIS LEU ARG
SEQRES 29 A 696 LYS PRO GLU ASN SER GLU CYS ASP ALA THR ALA LYS ASN
SEQRES 30 A 696 LYS ASN GLU CYS SER LEU HIS ILE HIS ALA SER TYR SER
SEQRES 31 A 696 ILE SER GLN LYS LEU ASN VAL PRO MET ALA PRO LEU SER
SEQRES 32 A 696 GLU PRO ASN ALA VAL GLY ILE VAL ILE ALA HIS GLY SER
SEQRES 33 A 696 VAL GLY ASP ALA ILE SER VAL MET VAL PRO ASP VAL TYR
SEQRES 34 A 696 ILE SER ASP ASP GLY GLY TYR SER TRP THR LYS MET LEU
SEQRES 35 A 696 GLU GLY PRO HIS TYR TYR THR ILE LEU ASP SER GLY GLY
SEQRES 36 A 696 ILE ILE VAL ALA ILE GLU HIS SER SER ARG PRO ILE ASN
SEQRES 37 A 696 VAL ILE LYS PHE SER THR ASP GLU GLY GLN CYS TRP GLN
SEQRES 38 A 696 THR TYR THR PHE THR ARG ASP PRO ILE TYR PHE THR GLY
SEQRES 39 A 696 LEU ALA SER GLU PRO GLY ALA ARG SER MET ASN ILE SER
SEQRES 40 A 696 ILE TRP GLY PHE THR GLU SER PHE LEU THR SER GLN TRP
SEQRES 41 A 696 VAL SER TYR THR ILE ASP PHE LYS ASP ILE LEU GLU ARG
SEQRES 42 A 696 ASN CYS GLU GLU LYS ASP TYR THR ILE TRP LEU ALA HIS
SEQRES 43 A 696 SER THR ASP PRO GLU ASP TYR GLU ASP GLY CYS ILE LEU
SEQRES 44 A 696 GLY TYR LYS GLU GLN PHE LEU ARG LEU ARG LYS SER SER
SEQRES 45 A 696 MET CYS GLN ASN GLY ARG ASP TYR VAL VAL THR LYS GLN
SEQRES 46 A 696 PRO SER ILE CYS LEU CYS SER LEU GLU ASP PHE LEU CYS
SEQRES 47 A 696 ASP PHE GLY TYR TYR ARG PRO GLU ASN ASP SER LYS CYS
SEQRES 48 A 696 VAL GLU GLN PRO GLU LEU LYS GLY HIS ASP LEU GLU PHE
SEQRES 49 A 696 CYS LEU TYR GLY ARG GLU GLU HIS LEU THR THR ASN GLY
SEQRES 50 A 696 TYR ARG LYS ILE PRO GLY ASP LYS CYS GLN GLY GLY VAL
SEQRES 51 A 696 ASN PRO VAL ARG GLU VAL LYS ASP LEU LYS LYS LYS CYS
SEQRES 52 A 696 THR SER ASN PHE LEU SER PRO GLU LYS GLN ASN SER LYS
SEQRES 53 A 696 SER ASN SER GLY SER ALA MET ILE GLU GLY ARG GLY VAL
SEQRES 54 A 696 GLY HIS HIS HIS HIS HIS HIS
HET NAG B 1 14
HET NAG B 2 14
HET NAG C 1 14
HET NAG C 2 14
HET Q9Z A 805 11
HET PGE A 806 10
HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
HETNAM Q9Z 3-(3-METHYLBUTYL)-4~{H}-1,2,3-TRIAZOL-5-ONE
HETNAM PGE TRIETHYLENE GLYCOL
HETSYN NAG N-ACETYL-BETA-D-GLUCOSAMINE; 2-ACETAMIDO-2-DEOXY-BETA-
HETSYN 2 NAG D-GLUCOSE; 2-ACETAMIDO-2-DEOXY-D-GLUCOSE; 2-ACETAMIDO-
HETSYN 3 NAG 2-DEOXY-GLUCOSE; N-ACETYL-D-GLUCOSAMINE
FORMUL 2 NAG 4(C8 H15 N O6)
FORMUL 4 Q9Z C7 H13 N3 O
FORMUL 5 PGE C6 H14 O4
FORMUL 6 HOH *57(H2 O)
HELIX 1 AA1 ASP A 58 THR A 67 1 10
HELIX 2 AA2 SER A 230 ASN A 232 5 3
HELIX 3 AA3 ALA A 431 GLN A 437 1 7
HELIX 4 AA4 ASP A 496 GLY A 499 5 4
HELIX 5 AA5 GLU A 580 LYS A 582 5 3
HELIX 6 AA6 SER A 636 GLU A 638 5 3
HELIX 7 AA7 GLY A 663 LEU A 670 1 8
HELIX 8 AA8 LEU A 703 THR A 708 1 6
HELIX 9 AA9 SER A 709 PHE A 711 5 3
SHEET 1 AA1 4 HIS A 68 VAL A 71 0
SHEET 2 AA1 4 VAL A 565 ASP A 570 -1 O THR A 568 N HIS A 68
SHEET 3 AA1 4 ASN A 549 PHE A 555 -1 N GLY A 554 O VAL A 565
SHEET 4 AA1 4 TYR A 535 ALA A 540 -1 N TYR A 535 O PHE A 555
SHEET 1 AA2 4 SER A 78 VAL A 84 0
SHEET 2 AA2 4 VAL A 90 THR A 96 -1 O THR A 96 N SER A 78
SHEET 3 AA2 4 SER A 109 SER A 114 -1 O LYS A 110 N THR A 95
SHEET 4 AA2 4 LYS A 122 ASP A 123 -1 O LYS A 122 N ARG A 113
SHEET 1 AA3 4 MET A 139 ILE A 141 0
SHEET 2 AA3 4 VAL A 149 THR A 152 -1 O VAL A 150 N ALA A 140
SHEET 3 AA3 4 ARG A 163 SER A 167 -1 O PHE A 165 N LEU A 151
SHEET 4 AA3 4 VAL A 175 ASP A 178 -1 O VAL A 175 N ARG A 166
SHEET 1 AA4 4 MET A 188 TYR A 189 0
SHEET 2 AA4 4 LEU A 197 LEU A 200 -1 O LEU A 198 N MET A 188
SHEET 3 AA4 4 LEU A 206 SER A 209 -1 O TRP A 207 N ALA A 199
SHEET 4 AA4 4 GLU A 217 HIS A 220 -1 O HIS A 220 N LEU A 206
SHEET 1 AA5 7 VAL A 223 TRP A 228 0
SHEET 2 AA5 7 ILE A 234 THR A 238 -1 O THR A 237 N CYS A 224
SHEET 3 AA5 7 LEU A 251 THR A 256 -1 O TRP A 254 N PHE A 236
SHEET 4 AA5 7 LYS A 264 GLY A 276 -1 O ILE A 270 N LEU A 251
SHEET 5 AA5 7 PHE A 279 MET A 285 -1 O PHE A 281 N GLY A 274
SHEET 6 AA5 7 ARG A 292 SER A 297 -1 O HIS A 295 N ALA A 282
SHEET 7 AA5 7 SER A 305 MET A 306 -1 O SER A 305 N VAL A 296
SHEET 1 AA6 4 TYR A 318 ALA A 323 0
SHEET 2 AA6 4 VAL A 328 ASP A 333 -1 O PHE A 329 N ALA A 322
SHEET 3 AA6 4 PHE A 340 SER A 346 -1 O PHE A 344 N MET A 330
SHEET 4 AA6 4 TYR A 353 LEU A 361 -1 O HIS A 360 N GLY A 341
SHEET 1 AA7 8 THR A 372 ASN A 373 0
SHEET 2 AA7 8 TYR A 381 LEU A 386 -1 O ILE A 382 N THR A 372
SHEET 3 AA7 8 ILE A 392 THR A 397 -1 O MET A 395 N THR A 383
SHEET 4 AA7 8 THR A 405 ARG A 408 -1 O THR A 405 N ILE A 396
SHEET 5 AA7 8 SER A 426 HIS A 430 -1 O LEU A 427 N LEU A 407
SHEET 6 AA7 8 VAL A 455 GLY A 462 -1 O HIS A 458 N HIS A 430
SHEET 7 AA7 8 ASP A 471 SER A 475 -1 O TYR A 473 N ALA A 457
SHEET 8 AA7 8 THR A 483 LEU A 486 -1 O MET A 485 N VAL A 472
SHEET 1 AA8 4 HIS A 490 LEU A 495 0
SHEET 2 AA8 4 ILE A 500 GLU A 505 -1 O ILE A 500 N LEU A 495
SHEET 3 AA8 4 VAL A 513 SER A 517 -1 O LYS A 515 N ALA A 503
SHEET 4 AA8 4 GLN A 525 THR A 528 -1 O TYR A 527 N ILE A 514
SHEET 1 AA9 3 TYR A 584 LEU A 588 0
SHEET 2 AA9 3 TYR A 605 LEU A 612 -1 O PHE A 609 N TRP A 587
SHEET 3 AA9 3 THR A 627 ILE A 632 -1 O SER A 631 N LYS A 606
SHEET 1 AB1 2 PHE A 640 LEU A 641 0
SHEET 2 AB1 2 ARG A 683 LYS A 684 -1 O ARG A 683 N LEU A 641
SHEET 1 AB2 2 TYR A 646 TYR A 647 0
SHEET 2 AB2 2 VAL A 656 GLU A 657 -1 O VAL A 656 N TYR A 647
SHEET 1 AB3 2 THR A 678 THR A 679 0
SHEET 2 AB3 2 LYS A 701 ASP A 702 -1 O LYS A 701 N THR A 679
SSBOND 1 CYS A 224 CYS A 244 1555 1555 2.03
SSBOND 2 CYS A 415 CYS A 425 1555 1555 2.04
SSBOND 3 CYS A 579 CYS A 618 1555 1555 2.04
SSBOND 4 CYS A 601 CYS A 633 1555 1555 2.04
SSBOND 5 CYS A 635 CYS A 690 1555 1555 2.05
SSBOND 6 CYS A 642 CYS A 655 1555 1555 2.06
SSBOND 7 CYS A 669 CYS A 707 1555 1555 2.01
LINK ND2 ASN A 373 C1 NAG B 1 1555 1555 1.43
LINK ND2 ASN A 549 C1 NAG C 1 1555 1555 1.44
LINK O4 NAG B 1 C1 NAG B 2 1555 1555 1.44
LINK O4 NAG C 1 C1 NAG C 2 1555 1555 1.44
CRYST1 162.395 78.230 111.796 90.00 127.20 90.00 C 1 2 1 4
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 0.006158 0.000000 0.004674 0.00000
SCALE2 0.000000 0.012783 0.000000 0.00000
SCALE3 0.000000 0.000000 0.011230 0.00000