HEADER HYDROLASE 26-DEC-16 5MRR TITLE CRYSTAL STRUCTURE OF L1 PROTEASE OF LYSOBACTER SP. XL1 COMPND MOL_ID: 1; COMPND 2 MOLECULE: LYTIC ENDOPEPTIDASE PREPROENZYME; COMPND 3 CHAIN: A, B, C, D; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: LYSOBACTER SP. (STRAIN XL1); SOURCE 3 ORGANISM_TAXID: 186334; SOURCE 4 GENE: ALPA; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PAPROZ KEYWDS BACTERIOLYTIC PROTEASE L1, LYSOBACTER SP. XL1, CRYSTALS, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR A.GABDULKHAKOV,S.TISHCHENKO,A.LISOV,A.LEONTIEVSKY REVDAT 3 09-OCT-24 5MRR 1 REMARK REVDAT 2 17-JAN-24 5MRR 1 LINK REVDAT 1 17-JAN-18 5MRR 0 JRNL AUTH A.GABDULKHAKOV,S.TISHCHENKO,A.LISOV,A.LEONTIEVSKY JRNL TITL CRYSTAL STRUCTURE OF L1 PROTEASE OF LYSOBACTER SP. XL1 JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.35 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.11.1_2575: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.35 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 19.99 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 0.970 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.3 REMARK 3 NUMBER OF REFLECTIONS : 158793 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.159 REMARK 3 R VALUE (WORKING SET) : 0.157 REMARK 3 FREE R VALUE : 0.190 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.890 REMARK 3 FREE R VALUE TEST SET COUNT : 14854 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 19.9873 - 4.1823 0.98 9619 489 0.1463 0.1508 REMARK 3 2 4.1823 - 3.3246 0.99 9674 457 0.1428 0.1563 REMARK 3 3 3.3246 - 2.9058 1.00 9717 551 0.1550 0.1667 REMARK 3 4 2.9058 - 2.6408 1.00 9797 479 0.1532 0.1860 REMARK 3 5 2.6408 - 2.4519 1.00 9693 542 0.1501 0.1790 REMARK 3 6 2.4519 - 2.3075 0.97 9475 483 0.1400 0.1955 REMARK 3 7 2.3075 - 2.1921 0.98 9649 497 0.1356 0.1740 REMARK 3 8 2.1921 - 2.0968 0.99 9679 530 0.1321 0.1632 REMARK 3 9 2.0968 - 2.0162 1.00 9851 456 0.1257 0.1789 REMARK 3 10 2.0162 - 1.9466 1.00 9731 518 0.1342 0.1778 REMARK 3 11 1.9466 - 1.8858 1.00 9781 488 0.1334 0.1688 REMARK 3 12 1.8858 - 1.8320 0.99 9751 477 0.1325 0.1748 REMARK 3 13 1.8320 - 1.7838 1.00 9786 502 0.1423 0.1814 REMARK 3 14 1.7838 - 1.7403 0.99 9681 501 0.1468 0.2011 REMARK 3 15 1.7403 - 1.7007 0.99 9701 491 0.1584 0.2014 REMARK 3 16 1.7007 - 1.6645 0.96 9502 475 0.1622 0.2177 REMARK 3 17 1.6645 - 1.6313 0.98 9591 503 0.1636 0.2160 REMARK 3 18 1.6313 - 1.6005 0.99 9679 504 0.1639 0.2134 REMARK 3 19 1.6005 - 1.5719 0.99 9714 504 0.1685 0.2118 REMARK 3 20 1.5719 - 1.5453 0.98 9639 485 0.1793 0.2250 REMARK 3 21 1.5453 - 1.5204 0.98 9637 443 0.1922 0.2506 REMARK 3 22 1.5204 - 1.4970 0.98 9703 449 0.2028 0.2410 REMARK 3 23 1.4970 - 1.4750 0.98 9573 502 0.2032 0.2334 REMARK 3 24 1.4750 - 1.4542 0.97 9533 503 0.2101 0.2429 REMARK 3 25 1.4542 - 1.4346 0.97 9613 465 0.2145 0.2521 REMARK 3 26 1.4346 - 1.4159 0.97 9442 534 0.2284 0.2664 REMARK 3 27 1.4159 - 1.3982 0.97 9527 470 0.2407 0.2924 REMARK 3 28 1.3982 - 1.3814 0.97 9463 532 0.2603 0.2973 REMARK 3 29 1.3814 - 1.3653 0.96 9386 528 0.2656 0.3014 REMARK 3 30 1.3653 - 1.3500 0.97 9502 496 0.2710 0.3140 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.150 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 18.080 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.006 6017 REMARK 3 ANGLE : 0.851 8198 REMARK 3 CHIRALITY : 0.090 903 REMARK 3 PLANARITY : 0.005 1099 REMARK 3 DIHEDRAL : 22.485 2150 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5MRR COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 26-DEC-16. REMARK 100 THE DEPOSITION ID IS D_1200002903. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 16-MAY-15 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : BESSY REMARK 200 BEAMLINE : 14.1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97625 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 S 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 199062 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.250 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.1 REMARK 200 DATA REDUNDANCY : 4.980 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 8.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.25 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.34 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.0 REMARK 200 DATA REDUNDANCY IN SHELL : 4.98 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 1.400 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 2ALP REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 46.23 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.29 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1,4M LITHIUM SULPHATE, 0,1M BISTRIS, REMARK 280 PH 6.5, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 295K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 31.85500 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 59.09000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 48.24000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 59.09000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 31.85500 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 48.24000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3, 4 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 4 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 305 O HOH A 404 2.08 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 14 -38.54 -132.47 REMARK 500 PRO A 60 -151.52 -81.44 REMARK 500 ALA B 14 -79.68 -133.71 REMARK 500 PRO B 60 -149.72 -80.20 REMARK 500 ASN B 123 77.82 -101.38 REMARK 500 ALA C 14 -91.45 -135.71 REMARK 500 PRO C 60 -153.09 -82.29 REMARK 500 ASN D 12 -131.79 49.13 REMARK 500 THR D 33 -169.42 -161.74 REMARK 500 PRO D 60 -152.17 -81.43 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA D 204 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A 393 O REMARK 620 2 ASN D 81 O 108.6 REMARK 620 3 TYR D 82 O 159.6 84.0 REMARK 620 4 SER D 83 OG 90.4 88.6 73.6 REMARK 620 5 HOH D 329 O 103.7 139.7 58.9 67.5 REMARK 620 N 1 2 3 4 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL A 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL A 203 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL A 204 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL A 205 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 206 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 B 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 B 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL B 203 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL B 204 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL B 205 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL B 206 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL B 207 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue TRS B 208 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 C 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 C 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL C 203 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL C 204 REMARK 800 REMARK 800 SITE_IDENTIFIER: AE1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL C 205 REMARK 800 REMARK 800 SITE_IDENTIFIER: AE2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL C 206 REMARK 800 REMARK 800 SITE_IDENTIFIER: AE3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL C 207 REMARK 800 REMARK 800 SITE_IDENTIFIER: AE4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 D 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AE5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL D 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AE6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL D 203 REMARK 800 REMARK 800 SITE_IDENTIFIER: AE7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NA D 204 REMARK 800 REMARK 800 SITE_IDENTIFIER: AE8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL D 205 DBREF 5MRR A 1 199 UNP D2K8B3 D2K8B3_LYSSX 200 398 DBREF 5MRR B 1 199 UNP D2K8B3 D2K8B3_LYSSX 200 398 DBREF 5MRR C 1 199 UNP D2K8B3 D2K8B3_LYSSX 200 398 DBREF 5MRR D 1 199 UNP D2K8B3 D2K8B3_LYSSX 200 398 SEQRES 1 A 199 VAL ASN VAL LEU GLY GLY ILE GLU TYR SER ILE ASN ASN SEQRES 2 A 199 ALA THR LEU CYS SER VAL GLY PHE SER VAL THR ARG GLY SEQRES 3 A 199 ALA THR LYS GLY PHE VAL THR ALA GLY HIS CYS GLY GLY SEQRES 4 A 199 VAL GLY ALA ILE VAL ARG ILE GLY GLY THR GLN VAL GLY SEQRES 5 A 199 SER PHE ALA ALA ARG VAL PHE PRO GLY ASN ASP ARG ALA SEQRES 6 A 199 TRP VAL SER VAL GLY SER ALA HIS THR LEU GLN GLY ALA SEQRES 7 A 199 VAL SER ASN TYR SER GLY GLY THR ILE ALA ILE ARG GLY SEQRES 8 A 199 SER ALA GLU ALA ALA ILE GLY ALA ALA VAL CYS ARG SER SEQRES 9 A 199 GLY ARG THR THR GLY TYR ARG CYS GLY ASN ILE THR ALA SEQRES 10 A 199 LYS ASN VAL THR ALA ASN TYR ALA GLU GLY ALA VAL ARG SEQRES 11 A 199 GLY LEU THR GLN GLY ASN ALA CYS MET GLY ARG GLY ASP SEQRES 12 A 199 SER GLY GLY SER TRP PHE THR SER ALA GLY GLN ALA GLN SEQRES 13 A 199 GLY VAL MET SER GLY GLY ASN VAL GLN SER ASN GLY ASN SEQRES 14 A 199 ASN CYS GLY ILE PRO ALA SER GLN ARG SER SER LEU PHE SEQRES 15 A 199 GLU ARG VAL GLY PRO ILE LEU SER GLN TYR GLY LEU SER SEQRES 16 A 199 LEU VAL THR SER SEQRES 1 B 199 VAL ASN VAL LEU GLY GLY ILE GLU TYR SER ILE ASN ASN SEQRES 2 B 199 ALA THR LEU CYS SER VAL GLY PHE SER VAL THR ARG GLY SEQRES 3 B 199 ALA THR LYS GLY PHE VAL THR ALA GLY HIS CYS GLY GLY SEQRES 4 B 199 VAL GLY ALA ILE VAL ARG ILE GLY GLY THR GLN VAL GLY SEQRES 5 B 199 SER PHE ALA ALA ARG VAL PHE PRO GLY ASN ASP ARG ALA SEQRES 6 B 199 TRP VAL SER VAL GLY SER ALA HIS THR LEU GLN GLY ALA SEQRES 7 B 199 VAL SER ASN TYR SER GLY GLY THR ILE ALA ILE ARG GLY SEQRES 8 B 199 SER ALA GLU ALA ALA ILE GLY ALA ALA VAL CYS ARG SER SEQRES 9 B 199 GLY ARG THR THR GLY TYR ARG CYS GLY ASN ILE THR ALA SEQRES 10 B 199 LYS ASN VAL THR ALA ASN TYR ALA GLU GLY ALA VAL ARG SEQRES 11 B 199 GLY LEU THR GLN GLY ASN ALA CYS MET GLY ARG GLY ASP SEQRES 12 B 199 SER GLY GLY SER TRP PHE THR SER ALA GLY GLN ALA GLN SEQRES 13 B 199 GLY VAL MET SER GLY GLY ASN VAL GLN SER ASN GLY ASN SEQRES 14 B 199 ASN CYS GLY ILE PRO ALA SER GLN ARG SER SER LEU PHE SEQRES 15 B 199 GLU ARG VAL GLY PRO ILE LEU SER GLN TYR GLY LEU SER SEQRES 16 B 199 LEU VAL THR SER SEQRES 1 C 199 VAL ASN VAL LEU GLY GLY ILE GLU TYR SER ILE ASN ASN SEQRES 2 C 199 ALA THR LEU CYS SER VAL GLY PHE SER VAL THR ARG GLY SEQRES 3 C 199 ALA THR LYS GLY PHE VAL THR ALA GLY HIS CYS GLY GLY SEQRES 4 C 199 VAL GLY ALA ILE VAL ARG ILE GLY GLY THR GLN VAL GLY SEQRES 5 C 199 SER PHE ALA ALA ARG VAL PHE PRO GLY ASN ASP ARG ALA SEQRES 6 C 199 TRP VAL SER VAL GLY SER ALA HIS THR LEU GLN GLY ALA SEQRES 7 C 199 VAL SER ASN TYR SER GLY GLY THR ILE ALA ILE ARG GLY SEQRES 8 C 199 SER ALA GLU ALA ALA ILE GLY ALA ALA VAL CYS ARG SER SEQRES 9 C 199 GLY ARG THR THR GLY TYR ARG CYS GLY ASN ILE THR ALA SEQRES 10 C 199 LYS ASN VAL THR ALA ASN TYR ALA GLU GLY ALA VAL ARG SEQRES 11 C 199 GLY LEU THR GLN GLY ASN ALA CYS MET GLY ARG GLY ASP SEQRES 12 C 199 SER GLY GLY SER TRP PHE THR SER ALA GLY GLN ALA GLN SEQRES 13 C 199 GLY VAL MET SER GLY GLY ASN VAL GLN SER ASN GLY ASN SEQRES 14 C 199 ASN CYS GLY ILE PRO ALA SER GLN ARG SER SER LEU PHE SEQRES 15 C 199 GLU ARG VAL GLY PRO ILE LEU SER GLN TYR GLY LEU SER SEQRES 16 C 199 LEU VAL THR SER SEQRES 1 D 199 VAL ASN VAL LEU GLY GLY ILE GLU TYR SER ILE ASN ASN SEQRES 2 D 199 ALA THR LEU CYS SER VAL GLY PHE SER VAL THR ARG GLY SEQRES 3 D 199 ALA THR LYS GLY PHE VAL THR ALA GLY HIS CYS GLY GLY SEQRES 4 D 199 VAL GLY ALA ILE VAL ARG ILE GLY GLY THR GLN VAL GLY SEQRES 5 D 199 SER PHE ALA ALA ARG VAL PHE PRO GLY ASN ASP ARG ALA SEQRES 6 D 199 TRP VAL SER VAL GLY SER ALA HIS THR LEU GLN GLY ALA SEQRES 7 D 199 VAL SER ASN TYR SER GLY GLY THR ILE ALA ILE ARG GLY SEQRES 8 D 199 SER ALA GLU ALA ALA ILE GLY ALA ALA VAL CYS ARG SER SEQRES 9 D 199 GLY ARG THR THR GLY TYR ARG CYS GLY ASN ILE THR ALA SEQRES 10 D 199 LYS ASN VAL THR ALA ASN TYR ALA GLU GLY ALA VAL ARG SEQRES 11 D 199 GLY LEU THR GLN GLY ASN ALA CYS MET GLY ARG GLY ASP SEQRES 12 D 199 SER GLY GLY SER TRP PHE THR SER ALA GLY GLN ALA GLN SEQRES 13 D 199 GLY VAL MET SER GLY GLY ASN VAL GLN SER ASN GLY ASN SEQRES 14 D 199 ASN CYS GLY ILE PRO ALA SER GLN ARG SER SER LEU PHE SEQRES 15 D 199 GLU ARG VAL GLY PRO ILE LEU SER GLN TYR GLY LEU SER SEQRES 16 D 199 LEU VAL THR SER HET SO4 A 201 5 HET CL A 202 1 HET CL A 203 1 HET CL A 204 1 HET CL A 205 1 HET GOL A 206 6 HET SO4 B 201 5 HET SO4 B 202 5 HET CL B 203 1 HET CL B 204 1 HET CL B 205 1 HET GOL B 206 6 HET GOL B 207 6 HET TRS B 208 8 HET SO4 C 201 5 HET SO4 C 202 5 HET CL C 203 1 HET CL C 204 1 HET GOL C 205 6 HET GOL C 206 6 HET GOL C 207 6 HET SO4 D 201 5 HET CL D 202 1 HET CL D 203 1 HET NA D 204 1 HET GOL D 205 6 HETNAM SO4 SULFATE ION HETNAM CL CHLORIDE ION HETNAM GOL GLYCEROL HETNAM TRS 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL HETNAM NA SODIUM ION HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL HETSYN TRS TRIS BUFFER FORMUL 5 SO4 6(O4 S 2-) FORMUL 6 CL 11(CL 1-) FORMUL 10 GOL 7(C3 H8 O3) FORMUL 18 TRS C4 H12 N O3 1+ FORMUL 29 NA NA 1+ FORMUL 31 HOH *611(H2 O) HELIX 1 AA1 ALA A 34 GLY A 38 5 5 HELIX 2 AA2 PRO A 174 ARG A 178 5 5 HELIX 3 AA3 VAL A 185 GLY A 193 1 9 HELIX 4 AA4 ALA B 34 GLY B 38 5 5 HELIX 5 AA5 PRO B 174 ARG B 178 5 5 HELIX 6 AA6 VAL B 185 GLY B 193 1 9 HELIX 7 AA7 ALA C 34 GLY C 38 5 5 HELIX 8 AA8 PRO C 174 ARG C 178 5 5 HELIX 9 AA9 VAL C 185 GLY C 193 1 9 HELIX 10 AB1 ALA D 34 GLY D 38 5 5 HELIX 11 AB2 PRO D 174 ARG D 178 5 5 HELIX 12 AB3 VAL D 185 GLY D 193 1 9 SHEET 1 AA1 3 ASN A 2 GLY A 5 0 SHEET 2 AA1 3 THR A 74 SER A 80 1 O SER A 80 N GLY A 5 SHEET 3 AA1 3 THR A 86 ALA A 88 -1 O ILE A 87 N VAL A 79 SHEET 1 AA2 8 THR A 15 SER A 18 0 SHEET 2 AA2 8 GLU A 8 ILE A 11 -1 N TYR A 9 O CYS A 17 SHEET 3 AA2 8 ILE A 43 ARG A 45 -1 O ARG A 45 N SER A 10 SHEET 4 AA2 8 GLN A 50 VAL A 58 -1 O VAL A 51 N VAL A 44 SHEET 5 AA2 8 ARG A 64 VAL A 69 -1 O ARG A 64 N VAL A 58 SHEET 6 AA2 8 THR A 28 THR A 33 -1 N PHE A 31 O VAL A 67 SHEET 7 AA2 8 PHE A 21 ARG A 25 -1 N ARG A 25 O THR A 28 SHEET 8 AA2 8 SER A 195 LEU A 196 -1 O SER A 195 N THR A 24 SHEET 1 AA3 7 ALA A 100 GLY A 105 0 SHEET 2 AA3 7 GLY A 109 TYR A 124 -1 O GLY A 113 N VAL A 101 SHEET 3 AA3 7 GLY A 127 GLY A 135 -1 O GLN A 134 N THR A 116 SHEET 4 AA3 7 SER A 180 ARG A 184 -1 O PHE A 182 N THR A 133 SHEET 5 AA3 7 ALA A 155 GLY A 162 -1 N GLY A 161 O LEU A 181 SHEET 6 AA3 7 SER A 147 PHE A 149 -1 N TRP A 148 O GLN A 156 SHEET 7 AA3 7 ALA A 100 GLY A 105 -1 N CYS A 102 O PHE A 149 SHEET 1 AA4 3 ASN B 2 GLY B 5 0 SHEET 2 AA4 3 THR B 74 SER B 80 1 O SER B 80 N GLY B 5 SHEET 3 AA4 3 THR B 86 ALA B 88 -1 O ILE B 87 N VAL B 79 SHEET 1 AA5 8 THR B 15 SER B 18 0 SHEET 2 AA5 8 GLU B 8 ILE B 11 -1 N ILE B 11 O THR B 15 SHEET 3 AA5 8 ILE B 43 ILE B 46 -1 O ARG B 45 N SER B 10 SHEET 4 AA5 8 THR B 49 VAL B 58 -1 O GLY B 52 N VAL B 44 SHEET 5 AA5 8 ARG B 64 VAL B 69 -1 O TRP B 66 N ALA B 55 SHEET 6 AA5 8 THR B 28 THR B 33 -1 N PHE B 31 O VAL B 67 SHEET 7 AA5 8 PHE B 21 ARG B 25 -1 N ARG B 25 O THR B 28 SHEET 8 AA5 8 SER B 195 LEU B 196 -1 O SER B 195 N THR B 24 SHEET 1 AA6 7 ALA B 100 GLY B 105 0 SHEET 2 AA6 7 GLY B 109 TYR B 124 -1 O GLY B 113 N VAL B 101 SHEET 3 AA6 7 GLY B 127 GLY B 135 -1 O GLN B 134 N THR B 116 SHEET 4 AA6 7 SER B 180 ARG B 184 -1 O PHE B 182 N THR B 133 SHEET 5 AA6 7 ALA B 155 GLY B 162 -1 N GLY B 161 O LEU B 181 SHEET 6 AA6 7 SER B 147 PHE B 149 -1 N TRP B 148 O GLN B 156 SHEET 7 AA6 7 ALA B 100 GLY B 105 -1 N CYS B 102 O PHE B 149 SHEET 1 AA7 3 ASN C 2 GLY C 5 0 SHEET 2 AA7 3 THR C 74 SER C 80 1 O SER C 80 N GLY C 5 SHEET 3 AA7 3 THR C 86 ALA C 88 -1 O ILE C 87 N VAL C 79 SHEET 1 AA8 8 THR C 15 SER C 18 0 SHEET 2 AA8 8 GLU C 8 ILE C 11 -1 N TYR C 9 O CYS C 17 SHEET 3 AA8 8 ILE C 43 ILE C 46 -1 O ARG C 45 N SER C 10 SHEET 4 AA8 8 THR C 49 VAL C 58 -1 O VAL C 51 N VAL C 44 SHEET 5 AA8 8 ARG C 64 VAL C 69 -1 O ARG C 64 N VAL C 58 SHEET 6 AA8 8 THR C 28 THR C 33 -1 N PHE C 31 O VAL C 67 SHEET 7 AA8 8 PHE C 21 ARG C 25 -1 N PHE C 21 O VAL C 32 SHEET 8 AA8 8 SER C 195 LEU C 196 -1 O SER C 195 N THR C 24 SHEET 1 AA9 7 ALA C 100 GLY C 105 0 SHEET 2 AA9 7 GLY C 109 TYR C 124 -1 O GLY C 113 N VAL C 101 SHEET 3 AA9 7 GLY C 127 GLY C 135 -1 O LEU C 132 N VAL C 120 SHEET 4 AA9 7 SER C 180 ARG C 184 -1 O PHE C 182 N THR C 133 SHEET 5 AA9 7 ALA C 155 GLY C 162 -1 N GLY C 161 O LEU C 181 SHEET 6 AA9 7 SER C 147 PHE C 149 -1 N TRP C 148 O GLN C 156 SHEET 7 AA9 7 ALA C 100 GLY C 105 -1 N CYS C 102 O PHE C 149 SHEET 1 AB1 3 ASN D 2 GLY D 5 0 SHEET 2 AB1 3 THR D 74 SER D 80 1 O THR D 74 N VAL D 3 SHEET 3 AB1 3 THR D 86 ALA D 88 -1 O ILE D 87 N VAL D 79 SHEET 1 AB2 8 THR D 15 SER D 18 0 SHEET 2 AB2 8 GLU D 8 ILE D 11 -1 N TYR D 9 O CYS D 17 SHEET 3 AB2 8 ILE D 43 ILE D 46 -1 O ARG D 45 N SER D 10 SHEET 4 AB2 8 THR D 49 VAL D 58 -1 O GLY D 52 N VAL D 44 SHEET 5 AB2 8 ARG D 64 VAL D 69 -1 O ARG D 64 N VAL D 58 SHEET 6 AB2 8 THR D 28 THR D 33 -1 N PHE D 31 O VAL D 67 SHEET 7 AB2 8 PHE D 21 ARG D 25 -1 N VAL D 23 O GLY D 30 SHEET 8 AB2 8 SER D 195 LEU D 196 -1 O SER D 195 N THR D 24 SHEET 1 AB3 7 ALA D 100 GLY D 105 0 SHEET 2 AB3 7 GLY D 109 TYR D 124 -1 O GLY D 113 N VAL D 101 SHEET 3 AB3 7 GLY D 127 GLY D 135 -1 O LEU D 132 N VAL D 120 SHEET 4 AB3 7 SER D 180 ARG D 184 -1 O PHE D 182 N THR D 133 SHEET 5 AB3 7 ALA D 155 GLY D 162 -1 N GLY D 161 O LEU D 181 SHEET 6 AB3 7 SER D 147 PHE D 149 -1 N TRP D 148 O GLN D 156 SHEET 7 AB3 7 ALA D 100 GLY D 105 -1 N CYS D 102 O PHE D 149 SSBOND 1 CYS A 17 CYS A 37 1555 1555 2.08 SSBOND 2 CYS A 102 CYS A 112 1555 1555 2.07 SSBOND 3 CYS A 138 CYS A 171 1555 1555 2.06 SSBOND 4 CYS B 17 CYS B 37 1555 1555 2.08 SSBOND 5 CYS B 102 CYS B 112 1555 1555 2.10 SSBOND 6 CYS B 138 CYS B 171 1555 1555 2.06 SSBOND 7 CYS C 17 CYS C 37 1555 1555 2.09 SSBOND 8 CYS C 102 CYS C 112 1555 1555 2.04 SSBOND 9 CYS C 138 CYS C 171 1555 1555 2.06 SSBOND 10 CYS D 17 CYS D 37 1555 1555 2.05 SSBOND 11 CYS D 102 CYS D 112 1555 1555 2.07 SSBOND 12 CYS D 138 CYS D 171 1555 1555 2.06 LINK O HOH A 393 NA NA D 204 1555 1555 2.76 LINK O ASN D 81 NA NA D 204 1555 1555 2.64 LINK O TYR D 82 NA NA D 204 1555 1555 2.89 LINK OG SER D 83 NA NA D 204 1555 1555 2.57 LINK NA NA D 204 O HOH D 329 1555 1555 2.54 CISPEP 1 PHE A 59 PRO A 60 0 -1.63 CISPEP 2 PHE B 59 PRO B 60 0 -4.70 CISPEP 3 PHE C 59 PRO C 60 0 -1.26 CISPEP 4 PHE D 59 PRO D 60 0 -2.01 SITE 1 AC1 5 ARG A 25 GLY A 26 ALA A 27 THR A 28 SITE 2 AC1 5 HOH A 302 SITE 1 AC2 5 ALA A 96 ILE A 97 LYS A 118 HOH A 347 SITE 2 AC2 5 HOH A 461 SITE 1 AC3 4 ARG A 184 VAL A 185 GLY A 186 HOH A 367 SITE 1 AC4 3 LYS A 29 THR A 74 LEU A 75 SITE 1 AC5 1 ALA A 125 SITE 1 AC6 5 ASN A 167 HOH A 372 HOH A 393 SER D 83 SITE 2 AC6 5 TYR D 110 SITE 1 AC7 6 ASN B 12 ARG B 45 HOH B 319 HOH B 326 SITE 2 AC7 6 GLN C 191 TYR C 192 SITE 1 AC8 3 ARG B 45 GLY B 48 GLN B 50 SITE 1 AC9 3 ALA B 96 ILE B 97 LYS B 118 SITE 1 AD1 3 ASN B 12 HOH B 324 ARG C 57 SITE 1 AD2 1 SER B 71 SITE 1 AD3 4 GLU B 126 SER B 160 GLY B 161 HOH B 388 SITE 1 AD4 8 ARG B 57 VAL B 58 PHE B 59 HOH B 304 SITE 2 AD4 8 HOH B 308 ILE C 43 GLN C 50 HOH C 307 SITE 1 AD5 5 ASN B 62 ARG B 64 PRO B 187 HOH B 315 SITE 2 AD5 5 HOH B 346 SITE 1 AD6 9 ARG B 111 ARG B 178 HOH B 398 ARG C 111 SITE 2 AD6 9 ARG C 178 HOH C 334 HOH C 351 HOH C 387 SITE 3 AD6 9 HOH C 393 SITE 1 AD7 3 ARG C 45 GLN C 50 HOH C 374 SITE 1 AD8 3 ALA C 95 ALA C 96 HOH C 443 SITE 1 AD9 2 ALA C 125 HOH C 332 SITE 1 AE1 7 GLY A 39 VAL A 40 ARG A 57 ASN B 167 SITE 2 AE1 7 ASN C 81 SER C 83 HOH C 304 SITE 1 AE2 6 THR C 108 ARG C 111 HOH C 310 HOH C 312 SITE 2 AE2 6 HOH C 318 ASN D 13 SITE 1 AE3 8 HIS C 36 PHE C 59 TYR C 124 GLU C 126 SITE 2 AE3 8 SER C 160 GLY C 161 HOH C 332 HOH C 368 SITE 1 AE4 10 ARG A 111 CYS A 138 ARG A 178 HOH A 403 SITE 2 AE4 10 ARG D 111 ARG D 178 HOH D 332 HOH D 339 SITE 3 AE4 10 HOH D 374 HOH D 392 SITE 1 AE5 5 TYR D 82 GLY D 109 TYR D 110 NA D 204 SITE 2 AE5 5 HOH D 388 SITE 1 AE6 5 HOH B 314 GLY D 39 VAL D 40 ARG D 57 SITE 2 AE6 5 HOH D 438 SITE 1 AE7 6 HOH A 393 ASN D 81 TYR D 82 SER D 83 SITE 2 AE7 6 CL D 202 HOH D 329 SITE 1 AE8 6 GLY B 84 TYR D 124 GLU D 126 SER D 160 SITE 2 AE8 6 GLY D 161 HOH D 381 CRYST1 63.710 96.480 118.180 90.00 90.00 90.00 P 21 21 21 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.015696 0.000000 0.000000 0.00000 SCALE2 0.000000 0.010365 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008462 0.00000