HEADER TRANSCRIPTION 26-DEC-16 5MRU TITLE TETR(CLASS A) IN COMPLEX WITH 5A,6-ANHYDROTETRACYCLINE AND MAGNESIUM COMPND MOL_ID: 1; COMPND 2 MOLECULE: TETRACYCLINE REPRESSOR, CLASS A; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PSEUDOMONAS SP.; SOURCE 3 ORGANISM_TAXID: 306; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS TRANSCRIPTION, REPRESSOR, TETRACYCLINE, HELIX-TURN-HELIX EXPDTA X-RAY DIFFRACTION AUTHOR W.HINRICHS,G.J.PALM REVDAT 3 17-JAN-24 5MRU 1 REMARK REVDAT 2 25-APR-18 5MRU 1 REMARK REVDAT 1 17-JAN-18 5MRU 0 JRNL AUTH W.HINRICHS,G.J.PALM JRNL TITL TETR(CLASS A) IN COMPLEX WITH 5A,6-ANHYDROTETRACYCLINE AND JRNL TITL 2 MAGNESIUM JRNL REF TO BE PUBLISHED JRNL REFN REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH S.WERTEN,J.SCHNEIDER,G.J.PALM,W.HINRICHS REMARK 1 TITL MODULAR ORGANISATION OF INDUCER RECOGNITION AND ALLOSTERY IN REMARK 1 TITL 2 THE TETRACYCLINE REPRESSOR REMARK 1 REF FEBS JOURNAL V. 283 2102 2016 REMARK 1 REFN ISSN 1742-4658 REMARK 1 PMID 27028290 REMARK 1 DOI 10.1111/FEBS.13723 REMARK 2 REMARK 2 RESOLUTION. 2.55 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0073 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.55 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 54.65 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 98.6 REMARK 3 NUMBER OF REFLECTIONS : 6658 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.232 REMARK 3 R VALUE (WORKING SET) : 0.228 REMARK 3 FREE R VALUE : 0.271 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 9.900 REMARK 3 FREE R VALUE TEST SET COUNT : 733 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.55 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.62 REMARK 3 REFLECTION IN BIN (WORKING SET) : 450 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 92.87 REMARK 3 BIN R VALUE (WORKING SET) : 0.3590 REMARK 3 BIN FREE R VALUE SET COUNT : 45 REMARK 3 BIN FREE R VALUE : 0.3520 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1264 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 32 REMARK 3 SOLVENT ATOMS : 9 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 56.90 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 62.85 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.14000 REMARK 3 B22 (A**2) : 0.14000 REMARK 3 B33 (A**2) : -0.28000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.576 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.319 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.276 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 29.357 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.939 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.916 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1317 ; 0.013 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 1219 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 1796 ; 1.555 ; 1.984 REMARK 3 BOND ANGLES OTHERS (DEGREES): 2763 ; 0.880 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 170 ; 6.615 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 57 ;35.095 ;23.158 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 185 ;19.123 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 12 ;18.173 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 204 ; 0.084 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1539 ; 0.007 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 309 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 689 ; 1.619 ; 2.736 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 688 ; 1.619 ; 2.736 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 856 ; 2.603 ; 4.092 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 857 ; 2.601 ; 4.092 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 627 ; 1.570 ; 2.806 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 621 ; 1.562 ; 2.807 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 931 ; 2.591 ; 4.164 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 1634 ; 4.542 ;22.328 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 1613 ; 4.446 ;22.266 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 3 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 3 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 2 A 36 REMARK 3 RESIDUE RANGE : A 37 A 39 REMARK 3 RESIDUE RANGE : A 40 A 64 REMARK 3 ORIGIN FOR THE GROUP (A): 8.0948 28.1797 6.4894 REMARK 3 T TENSOR REMARK 3 T11: 0.3120 T22: 0.0946 REMARK 3 T33: 0.1237 T12: 0.0521 REMARK 3 T13: 0.0025 T23: -0.0257 REMARK 3 L TENSOR REMARK 3 L11: 6.1461 L22: 11.0774 REMARK 3 L33: 7.0421 L12: 2.2979 REMARK 3 L13: 4.0614 L23: 4.1478 REMARK 3 S TENSOR REMARK 3 S11: -0.4327 S12: -0.4145 S13: 0.7193 REMARK 3 S21: 0.2121 S22: 0.2389 S23: 0.3019 REMARK 3 S31: -1.1222 S32: -0.3094 S33: 0.1938 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 2 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 65 A 156 REMARK 3 RESIDUE RANGE : A 222 A 1011 REMARK 3 ORIGIN FOR THE GROUP (A): -3.4274 9.6615 5.0538 REMARK 3 T TENSOR REMARK 3 T11: 0.1342 T22: 0.3566 REMARK 3 T33: 0.3904 T12: -0.0867 REMARK 3 T13: 0.0691 T23: 0.2252 REMARK 3 L TENSOR REMARK 3 L11: 7.0432 L22: 8.0635 REMARK 3 L33: 3.1348 L12: 0.8161 REMARK 3 L13: 2.1460 L23: -0.9128 REMARK 3 S TENSOR REMARK 3 S11: 0.0800 S12: -1.2061 S13: -0.6189 REMARK 3 S21: 0.6203 S22: 0.1930 S23: 1.3977 REMARK 3 S31: 0.2289 S32: -0.6519 S33: -0.2730 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 178 A 208 REMARK 3 ORIGIN FOR THE GROUP (A): -6.1777 0.7861 -3.5657 REMARK 3 T TENSOR REMARK 3 T11: 0.2544 T22: 0.3602 REMARK 3 T33: 0.4191 T12: -0.1439 REMARK 3 T13: -0.1289 T23: 0.0099 REMARK 3 L TENSOR REMARK 3 L11: 9.0438 L22: 17.6712 REMARK 3 L33: 20.1545 L12: 3.8914 REMARK 3 L13: -8.1838 L23: -15.1375 REMARK 3 S TENSOR REMARK 3 S11: 0.0877 S12: 0.0800 S13: -0.6885 REMARK 3 S21: -0.3236 S22: -0.1025 S23: 0.6737 REMARK 3 S31: 0.9670 S32: 0.0524 S33: 0.0148 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 5MRU COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 26-DEC-16. REMARK 100 THE DEPOSITION ID IS D_1200002407. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 01-MAY-08 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU MICROMAX-007 REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.54178 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : MIRROR REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RIGAKU SATURN 92 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS NOVEMBER 3, 2014 REMARK 200 DATA SCALING SOFTWARE : XDS NOVEMBER 3, 2014 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 7877 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.505 REMARK 200 RESOLUTION RANGE LOW (A) : 54.650 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -1.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.2 REMARK 200 DATA REDUNDANCY : 4.800 REMARK 200 R MERGE (I) : 0.12800 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 12.3700 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.51 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.66 REMARK 200 COMPLETENESS FOR SHELL (%) : 93.3 REMARK 200 DATA REDUNDANCY IN SHELL : 2.90 REMARK 200 R MERGE FOR SHELL (I) : 1.12000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.020 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER 2.5.6 REMARK 200 STARTING MODEL: 2VPR REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 46.02 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.28 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 2UL COMPLEX [10UL TETR(A) WITH 39.6 REMARK 280 MG/ML TETR(A) + 50UL ANTC (2MM IN 200MM NACL) + 0.25UL MGCL2 (3M) REMARK 280 + 40UL H2O] + RESERVOIR 1UL (0.026MM (NH4)H2HPO4), VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+1/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+3/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+1/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+3/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 49.27800 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 32.83450 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 32.83450 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 24.63900 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 32.83450 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 32.83450 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 73.91700 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 32.83450 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 32.83450 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 24.63900 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 32.83450 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 32.83450 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 73.91700 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 49.27800 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3200 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 15650 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -35.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 THR A 2 REMARK 465 LYS A 3 REMARK 465 VAL A 36 REMARK 465 GLN A 37 REMARK 465 GLN A 38 REMARK 465 PRO A 39 REMARK 465 ARG A 158 REMARK 465 GLY A 159 REMARK 465 GLY A 160 REMARK 465 THR A 161 REMARK 465 VAL A 162 REMARK 465 GLU A 163 REMARK 465 GLN A 164 REMARK 465 ALA A 165 REMARK 465 PRO A 166 REMARK 465 LEU A 167 REMARK 465 SER A 168 REMARK 465 PRO A 169 REMARK 465 LEU A 170 REMARK 465 LEU A 171 REMARK 465 ARG A 172 REMARK 465 ALA A 173 REMARK 465 ALA A 174 REMARK 465 ILE A 175 REMARK 465 ASP A 176 REMARK 465 ALA A 177 REMARK 465 PHE A 178 REMARK 465 ASP A 179 REMARK 465 LEU A 203 REMARK 465 VAL A 204 REMARK 465 VAL A 205 REMARK 465 ARG A 206 REMARK 465 ASN A 207 REMARK 465 VAL A 208 REMARK 465 GLU A 209 REMARK 465 GLY A 210 REMARK 465 PRO A 211 REMARK 465 ARG A 212 REMARK 465 LYS A 213 REMARK 465 GLY A 214 REMARK 465 ASP A 215 REMARK 465 ASP A 216 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LEU A 4 CG CD1 CD2 REMARK 470 ASN A 7 CG OD1 ND2 REMARK 470 ARG A 28 CG CD NE CZ NH1 NH2 REMARK 470 GLN A 109 CD OE1 NE2 REMARK 470 MET A 110 CG SD CE REMARK 470 GLU A 111 CG CD OE1 OE2 REMARK 470 ASP A 114 CG OD1 OD2 REMARK 470 ARG A 118 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 157 CG CD OE1 OE2 REMARK 470 GLU A 180 CG CD OE1 OE2 REMARK 470 LYS A 200 CG CD CE NZ REMARK 470 ARG A 202 CG CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 104 NE - CZ - NH1 ANGL. DEV. = 3.1 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLN A 5 136.98 176.47 REMARK 500 LYS A 200 7.16 -60.03 REMARK 500 ARG A 201 19.30 -153.55 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 302 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 TDC A 301 O12 REMARK 620 2 TDC A 301 O11 68.0 REMARK 620 3 HOH A 401 O 57.7 63.3 REMARK 620 4 HOH A 402 O 125.2 82.2 68.1 REMARK 620 5 HOH A 407 O 72.0 96.9 129.7 159.6 REMARK 620 N 1 2 3 4 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue TDC A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG A 302 DBREF 5MRU A 1 216 PDB 5MRU 5MRU 1 216 SEQRES 1 A 216 MET THR LYS LEU GLN PRO ASN THR VAL ILE ARG ALA ALA SEQRES 2 A 216 LEU ASP LEU LEU ASN GLU VAL GLY VAL ASP GLY LEU THR SEQRES 3 A 216 THR ARG LYS LEU ALA GLU ARG LEU GLY VAL GLN GLN PRO SEQRES 4 A 216 ALA LEU TYR TRP HIS PHE ARG ASN LYS ARG ALA LEU LEU SEQRES 5 A 216 ASP ALA LEU ALA GLU ALA MET LEU ALA GLU ASN HIS SER SEQRES 6 A 216 THR SER VAL PRO ARG ALA ASP ASP ASP TRP ARG SER PHE SEQRES 7 A 216 LEU THR GLY ASN ALA ARG SER PHE ARG GLN ALA LEU LEU SEQRES 8 A 216 ALA TYR ARG ASP GLY ALA ARG ILE HIS ALA GLY THR ARG SEQRES 9 A 216 PRO GLY ALA PRO GLN MET GLU THR ALA ASP ALA GLN LEU SEQRES 10 A 216 ARG PHE LEU CYS GLU ALA GLY PHE SER ALA GLY ASP ALA SEQRES 11 A 216 VAL ASN ALA LEU MET THR ILE SER TYR PHE THR VAL GLY SEQRES 12 A 216 ALA VAL LEU GLU GLU GLN ALA GLY ASP SER GLU SER GLY SEQRES 13 A 216 GLU ARG GLY GLY THR VAL GLU GLN ALA PRO LEU SER PRO SEQRES 14 A 216 LEU LEU ARG ALA ALA ILE ASP ALA PHE ASP GLU ALA GLY SEQRES 15 A 216 PRO ASP ALA ALA PHE GLU GLN GLY LEU ALA VAL ILE VAL SEQRES 16 A 216 ASP GLY LEU ALA LYS ARG ARG LEU VAL VAL ARG ASN VAL SEQRES 17 A 216 GLU GLY PRO ARG LYS GLY ASP ASP HET TDC A 301 31 HET MG A 302 1 HETNAM TDC 5A,6-ANHYDROTETRACYCLINE HETNAM MG MAGNESIUM ION FORMUL 2 TDC C22 H22 N2 O7 FORMUL 3 MG MG 2+ FORMUL 4 HOH *9(H2 O) HELIX 1 AA1 PRO A 6 LEU A 25 1 20 HELIX 2 AA2 THR A 26 GLY A 35 1 10 HELIX 3 AA3 ASN A 47 HIS A 64 1 18 HELIX 4 AA4 ASP A 74 ALA A 92 1 19 HELIX 5 AA5 ASP A 95 ALA A 101 1 7 HELIX 6 AA6 GLY A 106 GLY A 124 1 19 HELIX 7 AA7 SER A 126 GLU A 154 1 29 HELIX 8 AA8 GLY A 182 LYS A 200 1 19 LINK O12 TDC A 301 MG MG A 302 1555 1555 2.43 LINK O11 TDC A 301 MG MG A 302 1555 1555 1.95 LINK MG MG A 302 O HOH A 401 1555 1555 2.76 LINK MG MG A 302 O HOH A 402 1555 1555 2.05 LINK MG MG A 302 O HOH A 407 1555 1555 2.45 SITE 1 AC1 15 HIS A 64 SER A 67 ASN A 82 PHE A 86 SITE 2 AC1 15 HIS A 100 THR A 103 ARG A 104 PRO A 105 SITE 3 AC1 15 GLN A 116 LEU A 134 MET A 135 MG A 302 SITE 4 AC1 15 HOH A 401 HOH A 402 HOH A 407 SITE 1 AC2 6 HIS A 100 THR A 103 TDC A 301 HOH A 401 SITE 2 AC2 6 HOH A 402 HOH A 407 CRYST1 65.669 65.669 98.556 90.00 90.00 90.00 P 41 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.015228 0.000000 0.000000 0.00000 SCALE2 0.000000 0.015228 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010147 0.00000