data_5MRX # _entry.id 5MRX # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.383 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 5MRX pdb_00005mrx 10.2210/pdb5mrx/pdb WWPDB D_1200002914 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2018-01-17 2 'Structure model' 1 1 2019-10-16 3 'Structure model' 1 2 2022-03-30 4 'Structure model' 1 3 2024-01-17 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Data collection' 2 3 'Structure model' 'Database references' 3 4 'Structure model' 'Data collection' 4 4 'Structure model' 'Refinement description' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 2 'Structure model' reflns_shell 2 3 'Structure model' citation 3 3 'Structure model' citation_author 4 3 'Structure model' database_2 5 4 'Structure model' chem_comp_atom 6 4 'Structure model' chem_comp_bond 7 4 'Structure model' pdbx_initial_refinement_model # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 3 'Structure model' '_citation.country' 2 3 'Structure model' '_citation.journal_abbrev' 3 3 'Structure model' '_citation.journal_id_ASTM' 4 3 'Structure model' '_citation.journal_id_CSD' 5 3 'Structure model' '_citation.journal_id_ISSN' 6 3 'Structure model' '_citation.pdbx_database_id_DOI' 7 3 'Structure model' '_citation.title' 8 3 'Structure model' '_citation.year' 9 3 'Structure model' '_database_2.pdbx_DOI' 10 3 'Structure model' '_database_2.pdbx_database_accession' # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 5MRX _pdbx_database_status.recvd_initial_deposition_date 2016-12-28 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site PDBE _pdbx_database_status.process_site PDBE _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data ? # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Ennifar, E.' 1 ? 'Micura, R.' 2 ? # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country US _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev J.Org.Chem. _citation.journal_id_ASTM JOCEAH _citation.journal_id_CSD 0035 _citation.journal_id_ISSN 0022-3263 _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume ? _citation.language ? _citation.page_first ? _citation.page_last ? _citation.title 'Synthesis, Thermodynamic Properties, and Crystal Structure of RNA Oligonucleotides Containing 5-Hydroxymethylcytosine' _citation.year 2017 _citation.database_id_CSD ? _citation.pdbx_database_id_DOI 10.1021/acs.joc.7b01171 _citation.pdbx_database_id_PubMed ? _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Riml, C.' 1 ? primary 'Lusser, A.' 2 ? primary 'Ennifar, E.' 3 ? primary 'Micura, R.' 4 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn 'RNA (27-MER)' 8774.281 1 ? ? ? MRC=5hydroxymethyl-cytosine 2 water nat water 18.015 211 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type polyribonucleotide _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code 'UGCU(5HM)CUAGUACGAGAGGACCGGAGUG' _entity_poly.pdbx_seq_one_letter_code_can UGCUXCUAGUACGAGAGGACCGGAGUG _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # _pdbx_entity_nonpoly.entity_id 2 _pdbx_entity_nonpoly.name water _pdbx_entity_nonpoly.comp_id HOH # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 U n 1 2 G n 1 3 C n 1 4 U n 1 5 5HM n 1 6 C n 1 7 U n 1 8 A n 1 9 G n 1 10 U n 1 11 A n 1 12 C n 1 13 G n 1 14 A n 1 15 G n 1 16 A n 1 17 G n 1 18 G n 1 19 A n 1 20 C n 1 21 C n 1 22 G n 1 23 G n 1 24 A n 1 25 G n 1 26 U n 1 27 G n # _pdbx_entity_src_syn.entity_id 1 _pdbx_entity_src_syn.pdbx_src_id 1 _pdbx_entity_src_syn.pdbx_alt_source_flag sample _pdbx_entity_src_syn.pdbx_beg_seq_num 1 _pdbx_entity_src_syn.pdbx_end_seq_num 27 _pdbx_entity_src_syn.organism_scientific 'Escherichia coli' _pdbx_entity_src_syn.organism_common_name ? _pdbx_entity_src_syn.ncbi_taxonomy_id 562 _pdbx_entity_src_syn.details ? # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight 5HM 'RNA linking' n ;5-(hydroxymethyl)cytidine 5'-(dihydrogen phosphate) ; ;5-hydroxymethylcytidine 5'-monophosphate ; 'C10 H16 N3 O9 P' 353.223 A 'RNA linking' y "ADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 C 'RNA linking' y "CYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O8 P' 323.197 G 'RNA linking' y "GUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O8 P' 363.221 HOH non-polymer . WATER ? 'H2 O' 18.015 U 'RNA linking' y "URIDINE-5'-MONOPHOSPHATE" ? 'C9 H13 N2 O9 P' 324.181 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 U 1 2647 2647 U U A . n A 1 2 G 2 2648 2648 G G A . n A 1 3 C 3 2649 2649 C C A . n A 1 4 U 4 2650 2650 U U A . n A 1 5 5HM 5 2651 2651 5HM MRC A . n A 1 6 C 6 2652 2652 C C A . n A 1 7 U 7 2653 2653 U U A . n A 1 8 A 8 2654 2654 A A A . n A 1 9 G 9 2655 2655 G G A . n A 1 10 U 10 2656 2656 U U A . n A 1 11 A 11 2657 2657 A A A . n A 1 12 C 12 2658 2658 C C A . n A 1 13 G 13 2659 2659 G G A . n A 1 14 A 14 2660 2660 A A A . n A 1 15 G 15 2661 2661 G G A . n A 1 16 A 16 2662 2662 A A A . n A 1 17 G 17 2663 2663 G G A . n A 1 18 G 18 2664 2664 G G A . n A 1 19 A 19 2665 2665 A A A . n A 1 20 C 20 2666 2666 C C A . n A 1 21 C 21 2667 2667 C C A . n A 1 22 G 22 2668 2668 G G A . n A 1 23 G 23 2669 2669 G G A . n A 1 24 A 24 2670 2670 A A A . n A 1 25 G 25 2671 2671 G G A . n A 1 26 U 26 2672 2672 U U A . n A 1 27 G 27 2673 2673 G G A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 HOH 1 2701 27 HOH HOH A . B 2 HOH 2 2702 135 HOH HOH A . B 2 HOH 3 2703 244 HOH HOH A . B 2 HOH 4 2704 46 HOH HOH A . B 2 HOH 5 2705 93 HOH HOH A . B 2 HOH 6 2706 11 HOH HOH A . B 2 HOH 7 2707 45 HOH HOH A . B 2 HOH 8 2708 10 HOH HOH A . B 2 HOH 9 2709 95 HOH HOH A . B 2 HOH 10 2710 23 HOH HOH A . B 2 HOH 11 2711 186 HOH HOH A . B 2 HOH 12 2712 116 HOH HOH A . B 2 HOH 13 2713 271 HOH HOH A . B 2 HOH 14 2714 4 HOH HOH A . B 2 HOH 15 2715 94 HOH HOH A . B 2 HOH 16 2716 26 HOH HOH A . B 2 HOH 17 2717 69 HOH HOH A . B 2 HOH 18 2718 19 HOH HOH A . B 2 HOH 19 2719 30 HOH HOH A . B 2 HOH 20 2720 18 HOH HOH A . B 2 HOH 21 2721 124 HOH HOH A . B 2 HOH 22 2722 1 HOH HOH A . B 2 HOH 23 2723 12 HOH HOH A . B 2 HOH 24 2724 107 HOH HOH A . B 2 HOH 25 2725 35 HOH HOH A . B 2 HOH 26 2726 2 HOH HOH A . B 2 HOH 27 2727 17 HOH HOH A . B 2 HOH 28 2728 43 HOH HOH A . B 2 HOH 29 2729 28 HOH HOH A . B 2 HOH 30 2730 5 HOH HOH A . B 2 HOH 31 2731 42 HOH HOH A . B 2 HOH 32 2732 61 HOH HOH A . B 2 HOH 33 2733 56 HOH HOH A . B 2 HOH 34 2734 9 HOH HOH A . B 2 HOH 35 2735 3 HOH HOH A . B 2 HOH 36 2736 44 HOH HOH A . B 2 HOH 37 2737 15 HOH HOH A . B 2 HOH 38 2738 8 HOH HOH A . B 2 HOH 39 2739 322 HOH HOH A . B 2 HOH 40 2740 40 HOH HOH A . B 2 HOH 41 2741 74 HOH HOH A . B 2 HOH 42 2742 39 HOH HOH A . B 2 HOH 43 2743 6 HOH HOH A . B 2 HOH 44 2744 83 HOH HOH A . B 2 HOH 45 2745 32 HOH HOH A . B 2 HOH 46 2746 130 HOH HOH A . B 2 HOH 47 2747 14 HOH HOH A . B 2 HOH 48 2748 20 HOH HOH A . B 2 HOH 49 2749 77 HOH HOH A . B 2 HOH 50 2750 67 HOH HOH A . B 2 HOH 51 2751 21 HOH HOH A . B 2 HOH 52 2752 70 HOH HOH A . B 2 HOH 53 2753 143 HOH HOH A . B 2 HOH 54 2754 37 HOH HOH A . B 2 HOH 55 2755 13 HOH HOH A . B 2 HOH 56 2756 49 HOH HOH A . B 2 HOH 57 2757 103 HOH HOH A . B 2 HOH 58 2758 25 HOH HOH A . B 2 HOH 59 2759 80 HOH HOH A . B 2 HOH 60 2760 66 HOH HOH A . B 2 HOH 61 2761 22 HOH HOH A . B 2 HOH 62 2762 255 HOH HOH A . B 2 HOH 63 2763 16 HOH HOH A . B 2 HOH 64 2764 47 HOH HOH A . B 2 HOH 65 2765 73 HOH HOH A . B 2 HOH 66 2766 75 HOH HOH A . B 2 HOH 67 2767 82 HOH HOH A . B 2 HOH 68 2768 54 HOH HOH A . B 2 HOH 69 2769 31 HOH HOH A . B 2 HOH 70 2770 24 HOH HOH A . B 2 HOH 71 2771 118 HOH HOH A . B 2 HOH 72 2772 34 HOH HOH A . B 2 HOH 73 2773 33 HOH HOH A . B 2 HOH 74 2774 113 HOH HOH A . B 2 HOH 75 2775 119 HOH HOH A . B 2 HOH 76 2776 106 HOH HOH A . B 2 HOH 77 2777 64 HOH HOH A . B 2 HOH 78 2778 29 HOH HOH A . B 2 HOH 79 2779 48 HOH HOH A . B 2 HOH 80 2780 226 HOH HOH A . B 2 HOH 81 2781 58 HOH HOH A . B 2 HOH 82 2782 202 HOH HOH A . B 2 HOH 83 2783 59 HOH HOH A . B 2 HOH 84 2784 55 HOH HOH A . B 2 HOH 85 2785 38 HOH HOH A . B 2 HOH 86 2786 101 HOH HOH A . B 2 HOH 87 2787 105 HOH HOH A . B 2 HOH 88 2788 36 HOH HOH A . B 2 HOH 89 2789 85 HOH HOH A . B 2 HOH 90 2790 65 HOH HOH A . B 2 HOH 91 2791 200 HOH HOH A . B 2 HOH 92 2792 177 HOH HOH A . B 2 HOH 93 2793 140 HOH HOH A . B 2 HOH 94 2794 7 HOH HOH A . B 2 HOH 95 2795 41 HOH HOH A . B 2 HOH 96 2796 63 HOH HOH A . B 2 HOH 97 2797 81 HOH HOH A . B 2 HOH 98 2798 76 HOH HOH A . B 2 HOH 99 2799 68 HOH HOH A . B 2 HOH 100 2800 57 HOH HOH A . B 2 HOH 101 2801 91 HOH HOH A . B 2 HOH 102 2802 279 HOH HOH A . B 2 HOH 103 2803 152 HOH HOH A . B 2 HOH 104 2804 79 HOH HOH A . B 2 HOH 105 2805 307 HOH HOH A . B 2 HOH 106 2806 139 HOH HOH A . B 2 HOH 107 2807 178 HOH HOH A . B 2 HOH 108 2808 71 HOH HOH A . B 2 HOH 109 2809 301 HOH HOH A . B 2 HOH 110 2810 72 HOH HOH A . B 2 HOH 111 2811 84 HOH HOH A . B 2 HOH 112 2812 267 HOH HOH A . B 2 HOH 113 2813 122 HOH HOH A . B 2 HOH 114 2814 110 HOH HOH A . B 2 HOH 115 2815 90 HOH HOH A . B 2 HOH 116 2816 60 HOH HOH A . B 2 HOH 117 2817 62 HOH HOH A . B 2 HOH 118 2818 108 HOH HOH A . B 2 HOH 119 2819 51 HOH HOH A . B 2 HOH 120 2820 112 HOH HOH A . B 2 HOH 121 2821 53 HOH HOH A . B 2 HOH 122 2822 117 HOH HOH A . B 2 HOH 123 2823 99 HOH HOH A . B 2 HOH 124 2824 275 HOH HOH A . B 2 HOH 125 2825 170 HOH HOH A . B 2 HOH 126 2826 123 HOH HOH A . B 2 HOH 127 2827 263 HOH HOH A . B 2 HOH 128 2828 254 HOH HOH A . B 2 HOH 129 2829 137 HOH HOH A . B 2 HOH 130 2830 133 HOH HOH A . B 2 HOH 131 2831 164 HOH HOH A . B 2 HOH 132 2832 114 HOH HOH A . B 2 HOH 133 2833 151 HOH HOH A . B 2 HOH 134 2834 78 HOH HOH A . B 2 HOH 135 2835 52 HOH HOH A . B 2 HOH 136 2836 131 HOH HOH A . B 2 HOH 137 2837 129 HOH HOH A . B 2 HOH 138 2838 241 HOH HOH A . B 2 HOH 139 2839 184 HOH HOH A . B 2 HOH 140 2840 155 HOH HOH A . B 2 HOH 141 2841 102 HOH HOH A . B 2 HOH 142 2842 127 HOH HOH A . B 2 HOH 143 2843 168 HOH HOH A . B 2 HOH 144 2844 138 HOH HOH A . B 2 HOH 145 2845 192 HOH HOH A . B 2 HOH 146 2846 276 HOH HOH A . B 2 HOH 147 2847 172 HOH HOH A . B 2 HOH 148 2848 182 HOH HOH A . B 2 HOH 149 2849 208 HOH HOH A . B 2 HOH 150 2850 136 HOH HOH A . B 2 HOH 151 2851 228 HOH HOH A . B 2 HOH 152 2852 257 HOH HOH A . B 2 HOH 153 2853 132 HOH HOH A . B 2 HOH 154 2854 100 HOH HOH A . B 2 HOH 155 2855 165 HOH HOH A . B 2 HOH 156 2856 216 HOH HOH A . B 2 HOH 157 2857 126 HOH HOH A . B 2 HOH 158 2858 96 HOH HOH A . B 2 HOH 159 2859 92 HOH HOH A . B 2 HOH 160 2860 89 HOH HOH A . B 2 HOH 161 2861 313 HOH HOH A . B 2 HOH 162 2862 227 HOH HOH A . B 2 HOH 163 2863 145 HOH HOH A . B 2 HOH 164 2864 166 HOH HOH A . B 2 HOH 165 2865 97 HOH HOH A . B 2 HOH 166 2866 169 HOH HOH A . B 2 HOH 167 2867 197 HOH HOH A . B 2 HOH 168 2868 225 HOH HOH A . B 2 HOH 169 2869 98 HOH HOH A . B 2 HOH 170 2870 180 HOH HOH A . B 2 HOH 171 2871 175 HOH HOH A . B 2 HOH 172 2872 203 HOH HOH A . B 2 HOH 173 2873 201 HOH HOH A . B 2 HOH 174 2874 146 HOH HOH A . B 2 HOH 175 2875 302 HOH HOH A . B 2 HOH 176 2876 134 HOH HOH A . B 2 HOH 177 2877 109 HOH HOH A . B 2 HOH 178 2878 86 HOH HOH A . B 2 HOH 179 2879 111 HOH HOH A . B 2 HOH 180 2880 281 HOH HOH A . B 2 HOH 181 2881 232 HOH HOH A . B 2 HOH 182 2882 104 HOH HOH A . B 2 HOH 183 2883 199 HOH HOH A . B 2 HOH 184 2884 50 HOH HOH A . B 2 HOH 185 2885 125 HOH HOH A . B 2 HOH 186 2886 87 HOH HOH A . B 2 HOH 187 2887 148 HOH HOH A . B 2 HOH 188 2888 304 HOH HOH A . B 2 HOH 189 2889 187 HOH HOH A . B 2 HOH 190 2890 253 HOH HOH A . B 2 HOH 191 2891 189 HOH HOH A . B 2 HOH 192 2892 88 HOH HOH A . B 2 HOH 193 2893 288 HOH HOH A . B 2 HOH 194 2894 242 HOH HOH A . B 2 HOH 195 2895 262 HOH HOH A . B 2 HOH 196 2896 196 HOH HOH A . B 2 HOH 197 2897 156 HOH HOH A . B 2 HOH 198 2898 191 HOH HOH A . B 2 HOH 199 2899 161 HOH HOH A . B 2 HOH 200 2900 188 HOH HOH A . B 2 HOH 201 2901 220 HOH HOH A . B 2 HOH 202 2902 218 HOH HOH A . B 2 HOH 203 2903 167 HOH HOH A . B 2 HOH 204 2904 259 HOH HOH A . B 2 HOH 205 2905 306 HOH HOH A . B 2 HOH 206 2906 293 HOH HOH A . B 2 HOH 207 2907 147 HOH HOH A . B 2 HOH 208 2908 245 HOH HOH A . B 2 HOH 209 2909 185 HOH HOH A . B 2 HOH 210 2910 294 HOH HOH A . B 2 HOH 211 2911 264 HOH HOH A . # loop_ _software.citation_id _software.classification _software.compiler_name _software.compiler_version _software.contact_author _software.contact_author_email _software.date _software.description _software.dependencies _software.hardware _software.language _software.location _software.mods _software.name _software.os _software.os_version _software.type _software.version _software.pdbx_ordinal ? refinement ? ? ? ? ? ? ? ? ? ? ? PHENIX ? ? ? 1.9_1692 1 ? 'data reduction' ? ? ? ? ? ? ? ? ? ? ? XDS ? ? ? . 2 ? 'data scaling' ? ? ? ? ? ? ? ? ? ? ? XSCALE ? ? ? . 3 ? phasing ? ? ? ? ? ? ? ? ? ? ? MOLREP ? ? ? . 4 # _cell.angle_alpha 90.00 _cell.angle_alpha_esd ? _cell.angle_beta 90.00 _cell.angle_beta_esd ? _cell.angle_gamma 90.00 _cell.angle_gamma_esd ? _cell.entry_id 5MRX _cell.details ? _cell.formula_units_Z ? _cell.length_a 29.510 _cell.length_a_esd ? _cell.length_b 29.510 _cell.length_b_esd ? _cell.length_c 76.800 _cell.length_c_esd ? _cell.volume ? _cell.volume_esd ? _cell.Z_PDB 4 _cell.reciprocal_angle_alpha ? _cell.reciprocal_angle_beta ? _cell.reciprocal_angle_gamma ? _cell.reciprocal_angle_alpha_esd ? _cell.reciprocal_angle_beta_esd ? _cell.reciprocal_angle_gamma_esd ? _cell.reciprocal_length_a ? _cell.reciprocal_length_b ? _cell.reciprocal_length_c ? _cell.reciprocal_length_a_esd ? _cell.reciprocal_length_b_esd ? _cell.reciprocal_length_c_esd ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 5MRX _symmetry.cell_setting ? _symmetry.Int_Tables_number 78 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 43' _symmetry.pdbx_full_space_group_name_H-M ? # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 5MRX _exptl.crystals_number 1 _exptl.details ? _exptl.method 'X-RAY DIFFRACTION' _exptl.method_details ? # _exptl_crystal.colour ? _exptl_crystal.density_diffrn ? _exptl_crystal.density_Matthews 1.91 _exptl_crystal.density_method ? _exptl_crystal.density_percent_sol 35.45 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.id 1 _exptl_crystal.preparation ? _exptl_crystal.size_max ? _exptl_crystal.size_mid ? _exptl_crystal.size_min ? _exptl_crystal.size_rad ? _exptl_crystal.colour_lustre ? _exptl_crystal.colour_modifier ? _exptl_crystal.colour_primary ? _exptl_crystal.density_meas ? _exptl_crystal.density_meas_esd ? _exptl_crystal.density_meas_gt ? _exptl_crystal.density_meas_lt ? _exptl_crystal.density_meas_temp ? _exptl_crystal.density_meas_temp_esd ? _exptl_crystal.density_meas_temp_gt ? _exptl_crystal.density_meas_temp_lt ? _exptl_crystal.pdbx_crystal_image_url ? _exptl_crystal.pdbx_crystal_image_format ? _exptl_crystal.pdbx_mosaicity ? _exptl_crystal.pdbx_mosaicity_esd ? # _exptl_crystal_grow.apparatus ? _exptl_crystal_grow.atmosphere ? _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.details ? _exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.method_ref ? _exptl_crystal_grow.pH ? _exptl_crystal_grow.pressure ? _exptl_crystal_grow.pressure_esd ? _exptl_crystal_grow.seeding ? _exptl_crystal_grow.seeding_ref ? _exptl_crystal_grow.temp 293 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.temp_esd ? _exptl_crystal_grow.time ? _exptl_crystal_grow.pdbx_details ;well: 3.0M (NH4)2SO4 drop: 50mM KMops pH7.0, 10mM MnCl2, 10mM MgCl2, 1.0mM Na-EDTA pH 8.0, 10mM Tris pH 8.0, RNA 2.5mg/ml 2vol drop + 1vol well ; _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.ambient_environment ? _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.ambient_temp_esd ? _diffrn.crystal_id 1 _diffrn.crystal_support ? _diffrn.crystal_treatment ? _diffrn.details ? _diffrn.id 1 _diffrn.ambient_pressure ? _diffrn.ambient_pressure_esd ? _diffrn.ambient_pressure_gt ? _diffrn.ambient_pressure_lt ? _diffrn.ambient_temp_gt ? _diffrn.ambient_temp_lt ? # _diffrn_detector.details ? _diffrn_detector.detector PIXEL _diffrn_detector.diffrn_id 1 _diffrn_detector.type 'DECTRIS PILATUS 2M' _diffrn_detector.area_resol_mean ? _diffrn_detector.dtime ? _diffrn_detector.pdbx_frames_total ? _diffrn_detector.pdbx_collection_time_total ? _diffrn_detector.pdbx_collection_date 2016-11-27 # _diffrn_radiation.collimation ? _diffrn_radiation.diffrn_id 1 _diffrn_radiation.filter_edge ? _diffrn_radiation.inhomogeneity ? _diffrn_radiation.monochromator ? _diffrn_radiation.polarisn_norm ? _diffrn_radiation.polarisn_ratio ? _diffrn_radiation.probe ? _diffrn_radiation.type ? _diffrn_radiation.xray_symbol ? _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_wavelength_list ? _diffrn_radiation.pdbx_wavelength ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_analyzer ? _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.77 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.current ? _diffrn_source.details ? _diffrn_source.diffrn_id 1 _diffrn_source.power ? _diffrn_source.size ? _diffrn_source.source SYNCHROTRON _diffrn_source.target ? _diffrn_source.type 'SLS BEAMLINE X06DA' _diffrn_source.voltage ? _diffrn_source.take-off_angle ? _diffrn_source.pdbx_wavelength_list 0.77 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_beamline X06DA _diffrn_source.pdbx_synchrotron_site SLS # _reflns.B_iso_Wilson_estimate ? _reflns.entry_id 5MRX _reflns.data_reduction_details ? _reflns.data_reduction_method ? _reflns.d_resolution_high 0.85 _reflns.d_resolution_low 50 _reflns.details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.number_all ? _reflns.number_obs 57106 _reflns.observed_criterion ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.observed_criterion_I_max ? _reflns.observed_criterion_I_min ? _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I ? _reflns.percent_possible_obs 99.6 _reflns.R_free_details ? _reflns.Rmerge_F_all ? _reflns.Rmerge_F_obs ? _reflns.Friedel_coverage ? _reflns.number_gt ? _reflns.threshold_expression ? _reflns.pdbx_redundancy 22.36 _reflns.pdbx_Rmerge_I_obs ? _reflns.pdbx_Rmerge_I_all ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_av_sigmaI ? _reflns.pdbx_netI_over_sigmaI 30.32 _reflns.pdbx_res_netI_over_av_sigmaI_2 ? _reflns.pdbx_res_netI_over_sigmaI_2 ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_d_res_high_opt ? _reflns.pdbx_d_res_low_opt ? _reflns.pdbx_d_res_opt_method ? _reflns.phase_calculation_details ? _reflns.pdbx_Rrim_I_all 0.045 _reflns.pdbx_Rpim_I_all ? _reflns.pdbx_d_opt ? _reflns.pdbx_number_measured_all ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.pdbx_CC_half ? _reflns.pdbx_R_split ? # _refine.aniso_B[1][1] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][2] ? _refine.aniso_B[2][3] ? _refine.aniso_B[3][3] ? _refine.B_iso_max ? _refine.B_iso_mean ? _refine.B_iso_min ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.details ? _refine.diff_density_max ? _refine.diff_density_max_esd ? _refine.diff_density_min ? _refine.diff_density_min_esd ? _refine.diff_density_rms ? _refine.diff_density_rms_esd ? _refine.entry_id 5MRX _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.ls_abs_structure_details ? _refine.ls_abs_structure_Flack ? _refine.ls_abs_structure_Flack_esd ? _refine.ls_abs_structure_Rogers ? _refine.ls_abs_structure_Rogers_esd ? _refine.ls_d_res_high 0.851 _refine.ls_d_res_low 29.510 _refine.ls_extinction_coef ? _refine.ls_extinction_coef_esd ? _refine.ls_extinction_expression ? _refine.ls_extinction_method ? _refine.ls_goodness_of_fit_all ? _refine.ls_goodness_of_fit_all_esd ? _refine.ls_goodness_of_fit_obs ? _refine.ls_goodness_of_fit_obs_esd ? _refine.ls_hydrogen_treatment ? _refine.ls_matrix_type ? _refine.ls_number_constraints ? _refine.ls_number_parameters ? _refine.ls_number_reflns_all ? _refine.ls_number_reflns_obs 57106 _refine.ls_number_reflns_R_free 2870 _refine.ls_number_reflns_R_work ? _refine.ls_number_restraints ? _refine.ls_percent_reflns_obs 99.57 _refine.ls_percent_reflns_R_free 5.03 _refine.ls_R_factor_all ? _refine.ls_R_factor_obs 0.1587 _refine.ls_R_factor_R_free 0.1682 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_R_factor_R_work 0.1453 _refine.ls_R_Fsqd_factor_obs ? _refine.ls_R_I_factor_obs ? _refine.ls_redundancy_reflns_all ? _refine.ls_redundancy_reflns_obs ? _refine.ls_restrained_S_all ? _refine.ls_restrained_S_obs ? _refine.ls_shift_over_esd_max ? _refine.ls_shift_over_esd_mean ? _refine.ls_structure_factor_coef ? _refine.ls_weighting_details ? _refine.ls_weighting_scheme ? _refine.ls_wR_factor_all ? _refine.ls_wR_factor_obs ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.occupancy_max ? _refine.occupancy_min ? _refine.solvent_model_details ? _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.ls_R_factor_gt ? _refine.ls_goodness_of_fit_gt ? _refine.ls_goodness_of_fit_ref ? _refine.ls_shift_over_su_max ? _refine.ls_shift_over_su_max_lt ? _refine.ls_shift_over_su_mean ? _refine.ls_shift_over_su_mean_lt ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 1.37 _refine.pdbx_ls_sigma_Fsqd ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_ls_cross_valid_method 'FREE R-VALUE' _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_starting_model 3dvz _refine.pdbx_stereochemistry_target_values ? _refine.pdbx_R_Free_selection_details ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.pdbx_solvent_vdw_probe_radii 1.11 _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii 0.90 _refine.pdbx_real_space_R ? _refine.pdbx_density_correlation ? _refine.pdbx_pd_number_of_powder_patterns ? _refine.pdbx_pd_number_of_points ? _refine.pdbx_pd_meas_number_of_points ? _refine.pdbx_pd_proc_ls_prof_R_factor ? _refine.pdbx_pd_proc_ls_prof_wR_factor ? _refine.pdbx_pd_Marquardt_correlation_coeff ? _refine.pdbx_pd_Fsqrd_R_factor ? _refine.pdbx_pd_ls_matrix_band_width ? _refine.pdbx_overall_phase_error 18.78 _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_diffrn_id 1 _refine.overall_SU_B ? _refine.overall_SU_ML ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_average_fsc_overall ? _refine.pdbx_average_fsc_work ? _refine.pdbx_average_fsc_free ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 0 _refine_hist.pdbx_number_atoms_nucleic_acid 581 _refine_hist.pdbx_number_atoms_ligand 0 _refine_hist.number_atoms_solvent 211 _refine_hist.number_atoms_total 792 _refine_hist.d_res_high 0.851 _refine_hist.d_res_low 29.510 # loop_ _refine_ls_restr.pdbx_refine_id _refine_ls_restr.criterion _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.number _refine_ls_restr.rejects _refine_ls_restr.type _refine_ls_restr.weight _refine_ls_restr.pdbx_restraint_function 'X-RAY DIFFRACTION' ? 0.006 ? 707 ? f_bond_d ? ? 'X-RAY DIFFRACTION' ? 1.123 ? 1107 ? f_angle_d ? ? 'X-RAY DIFFRACTION' ? 12.481 ? 347 ? f_dihedral_angle_d ? ? 'X-RAY DIFFRACTION' ? 0.047 ? 147 ? f_chiral_restr ? ? 'X-RAY DIFFRACTION' ? 0.013 ? 30 ? f_plane_restr ? ? # loop_ _refine_ls_shell.pdbx_refine_id _refine_ls_shell.d_res_high _refine_ls_shell.d_res_low _refine_ls_shell.number_reflns_all _refine_ls_shell.number_reflns_obs _refine_ls_shell.number_reflns_R_free _refine_ls_shell.number_reflns_R_work _refine_ls_shell.percent_reflns_obs _refine_ls_shell.percent_reflns_R_free _refine_ls_shell.R_factor_all _refine_ls_shell.R_factor_obs _refine_ls_shell.R_factor_R_free _refine_ls_shell.R_factor_R_free_error _refine_ls_shell.R_factor_R_work _refine_ls_shell.redundancy_reflns_all _refine_ls_shell.redundancy_reflns_obs _refine_ls_shell.wR_factor_all _refine_ls_shell.wR_factor_obs _refine_ls_shell.wR_factor_R_free _refine_ls_shell.wR_factor_R_work _refine_ls_shell.pdbx_total_number_of_bins_used _refine_ls_shell.pdbx_phase_error _refine_ls_shell.pdbx_fsc_work _refine_ls_shell.pdbx_fsc_free 'X-RAY DIFFRACTION' 0.8509 0.8655 . . 136 2577 89.00 . . . 0.4468 . 0.4112 . . . . . . . . . . 'X-RAY DIFFRACTION' 0.8655 0.8813 . . 139 2649 93.00 . . . 0.4058 . 0.3646 . . . . . . . . . . 'X-RAY DIFFRACTION' 0.8813 0.8982 . . 143 2711 95.00 . . . 0.3515 . 0.3392 . . . . . . . . . . 'X-RAY DIFFRACTION' 0.8982 0.9166 . . 143 2720 95.00 . . . 0.3180 . 0.3180 . . . . . . . . . . 'X-RAY DIFFRACTION' 0.9166 0.9365 . . 142 2694 95.00 . . . 0.2962 . 0.2824 . . . . . . . . . . 'X-RAY DIFFRACTION' 0.9365 0.9583 . . 145 2751 95.00 . . . 0.2613 . 0.2649 . . . . . . . . . . 'X-RAY DIFFRACTION' 0.9583 0.9822 . . 143 2721 95.00 . . . 0.2390 . 0.2282 . . . . . . . . . . 'X-RAY DIFFRACTION' 0.9822 1.0088 . . 142 2687 95.00 . . . 0.2014 . 0.2074 . . . . . . . . . . 'X-RAY DIFFRACTION' 1.0088 1.0385 . . 143 2732 95.00 . . . 0.1919 . 0.1894 . . . . . . . . . . 'X-RAY DIFFRACTION' 1.0385 1.0720 . . 142 2699 95.00 . . . 0.1845 . 0.1776 . . . . . . . . . . 'X-RAY DIFFRACTION' 1.0720 1.1103 . . 144 2725 95.00 . . . 0.1878 . 0.1803 . . . . . . . . . . 'X-RAY DIFFRACTION' 1.1103 1.1548 . . 143 2721 95.00 . . . 0.1693 . 0.1770 . . . . . . . . . . 'X-RAY DIFFRACTION' 1.1548 1.2073 . . 143 2722 95.00 . . . 0.1958 . 0.1767 . . . . . . . . . . 'X-RAY DIFFRACTION' 1.2073 1.2710 . . 144 2740 95.00 . . . 0.1628 . 0.1767 . . . . . . . . . . 'X-RAY DIFFRACTION' 1.2710 1.3506 . . 145 2736 95.00 . . . 0.1740 . 0.1724 . . . . . . . . . . 'X-RAY DIFFRACTION' 1.3506 1.4549 . . 141 2695 95.00 . . . 0.1821 . 0.1706 . . . . . . . . . . 'X-RAY DIFFRACTION' 1.4549 1.6013 . . 145 2740 95.00 . . . 0.1583 . 0.1621 . . . . . . . . . . 'X-RAY DIFFRACTION' 1.6013 1.8330 . . 144 2740 95.00 . . . 0.1436 . 0.1350 . . . . . . . . . . 'X-RAY DIFFRACTION' 1.8330 2.3092 . . 143 2725 95.00 . . . 0.1544 . 0.1365 . . . . . . . . . . 'X-RAY DIFFRACTION' 2.3092 27.5609 . . 146 2761 95.00 . . . 0.1790 . 0.1034 . . . . . . . . . . # _struct.entry_id 5MRX _struct.title '27-nt SRL with a 5-hydroxymethyl cytidine modification' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 5MRX _struct_keywords.text 'RNA, modification, tetraloop' _struct_keywords.pdbx_keywords RNA # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? # _struct_ref.id 1 _struct_ref.db_name PDB _struct_ref.db_code 5MRX _struct_ref.pdbx_db_accession 5MRX _struct_ref.pdbx_db_isoform ? _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_align_begin 1 # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 5MRX _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 27 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession 5MRX _struct_ref_seq.db_align_beg 2647 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 2673 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 2647 _struct_ref_seq.pdbx_auth_seq_align_end 2673 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 0 ? 1 MORE 0 ? 1 'SSA (A^2)' 4820 ? # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale both ? A U 4 "O3'" ? ? ? 1_555 A 5HM 5 P ? ? A U 2650 A 5HM 2651 1_555 ? ? ? ? ? ? ? 1.598 ? ? covale2 covale both ? A 5HM 5 "O3'" ? ? ? 1_555 A C 6 P ? ? A 5HM 2651 A C 2652 1_555 ? ? ? ? ? ? ? 1.600 ? ? hydrog1 hydrog ? ? A G 2 N1 A ? ? 1_555 A U 26 O2 ? ? A G 2648 A U 2672 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog2 hydrog ? ? A G 2 O6 A ? ? 1_555 A U 26 N3 ? ? A G 2648 A U 2672 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog3 hydrog ? ? A C 3 N3 A ? ? 1_555 A G 25 N1 ? ? A C 2649 A G 2671 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? A C 3 N4 A ? ? 1_555 A G 25 O6 ? ? A C 2649 A G 2671 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? A C 3 O2 A ? ? 1_555 A G 25 N2 ? ? A C 2649 A G 2671 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? A U 4 N3 ? ? ? 1_555 A A 24 N1 ? ? A U 2650 A A 2670 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? A U 4 O4 ? ? ? 1_555 A A 24 N6 ? ? A U 2650 A A 2670 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? A 5HM 5 N3 ? ? ? 1_555 A G 23 N1 ? ? A 5HM 2651 A G 2669 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? A 5HM 5 N4 ? ? ? 1_555 A G 23 O6 ? ? A 5HM 2651 A G 2669 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? A 5HM 5 O2 ? ? ? 1_555 A G 23 N2 ? ? A 5HM 2651 A G 2669 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? A C 6 N3 ? ? ? 1_555 A G 22 N1 ? ? A C 2652 A G 2668 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? A C 6 N4 ? ? ? 1_555 A G 22 O6 ? ? A C 2652 A G 2668 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? A C 6 O2 ? ? ? 1_555 A G 22 N2 ? ? A C 2652 A G 2668 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? A U 7 O2 ? ? ? 1_555 A C 21 N4 ? ? A U 2653 A C 2667 1_555 ? ? ? ? ? ? 'U-C MISPAIR' ? ? ? hydrog15 hydrog ? ? A U 10 N3 ? ? ? 1_555 A A 19 N7 ? ? A U 2656 A A 2665 1_555 ? ? ? ? ? ? 'REVERSED HOOGSTEEN' ? ? ? hydrog16 hydrog ? ? A U 10 O2 ? ? ? 1_555 A A 19 N6 ? ? A U 2656 A A 2665 1_555 ? ? ? ? ? ? 'REVERSED HOOGSTEEN' ? ? ? hydrog17 hydrog ? ? A A 11 N6 ? ? ? 1_555 A G 18 N3 ? ? A A 2657 A G 2664 1_555 ? ? ? ? ? ? TYPE_11_PAIR ? ? ? hydrog18 hydrog ? ? A A 11 N7 ? ? ? 1_555 A G 18 N2 ? ? A A 2657 A G 2664 1_555 ? ? ? ? ? ? TYPE_11_PAIR ? ? ? hydrog19 hydrog ? ? A C 12 N3 ? ? ? 1_555 A G 17 N1 ? ? A C 2658 A G 2663 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog20 hydrog ? ? A C 12 N4 ? ? ? 1_555 A G 17 O6 ? ? A C 2658 A G 2663 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog21 hydrog ? ? A C 12 O2 ? ? ? 1_555 A G 17 N2 ? ? A C 2658 A G 2663 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog22 hydrog ? ? A G 13 N2 ? ? ? 1_555 A A 16 N7 ? ? A G 2659 A A 2662 1_555 ? ? ? ? ? ? 'G-A MISPAIR' ? ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference covale ? ? hydrog ? ? # loop_ _pdbx_validate_close_contact.id _pdbx_validate_close_contact.PDB_model_num _pdbx_validate_close_contact.auth_atom_id_1 _pdbx_validate_close_contact.auth_asym_id_1 _pdbx_validate_close_contact.auth_comp_id_1 _pdbx_validate_close_contact.auth_seq_id_1 _pdbx_validate_close_contact.PDB_ins_code_1 _pdbx_validate_close_contact.label_alt_id_1 _pdbx_validate_close_contact.auth_atom_id_2 _pdbx_validate_close_contact.auth_asym_id_2 _pdbx_validate_close_contact.auth_comp_id_2 _pdbx_validate_close_contact.auth_seq_id_2 _pdbx_validate_close_contact.PDB_ins_code_2 _pdbx_validate_close_contact.label_alt_id_2 _pdbx_validate_close_contact.dist 1 1 O A HOH 2709 ? ? O A HOH 2741 ? ? 1.99 2 1 O A HOH 2814 ? ? O A HOH 2871 ? ? 2.04 3 1 O A HOH 2791 ? ? O A HOH 2873 ? ? 2.05 4 1 O A HOH 2834 ? ? O A HOH 2873 ? ? 2.07 5 1 O A HOH 2774 ? ? O A HOH 2811 ? ? 2.08 6 1 O A HOH 2844 ? ? O A HOH 2858 ? ? 2.10 7 1 O A HOH 2896 ? ? O A HOH 2901 ? ? 2.11 8 1 O A HOH 2842 ? ? O A HOH 2847 ? ? 2.12 9 1 O A HOH 2823 ? ? O A HOH 2830 ? ? 2.12 10 1 O A HOH 2797 ? ? O A HOH 2823 ? ? 2.12 11 1 O A HOH 2709 ? ? O A HOH 2856 ? ? 2.13 12 1 O A HOH 2843 ? ? O A HOH 2863 ? ? 2.13 13 1 O A HOH 2802 ? ? O A HOH 2846 ? ? 2.13 14 1 O A HOH 2833 ? ? O A HOH 2861 ? ? 2.14 15 1 O A HOH 2821 ? ? O A HOH 2884 ? ? 2.14 16 1 O A HOH 2805 ? ? O A HOH 2875 ? ? 2.14 17 1 O A HOH 2838 ? ? O A HOH 2862 ? ? 2.15 18 1 O A HOH 2830 ? ? O A HOH 2888 ? ? 2.15 19 1 O A HOH 2755 ? ? O A HOH 2775 ? ? 2.16 20 1 O A HOH 2829 ? ? O A HOH 2839 ? ? 2.17 21 1 O A HOH 2776 ? ? O A HOH 2816 ? ? 2.17 22 1 O A HOH 2728 ? ? O A HOH 2840 ? ? 2.18 # loop_ _pdbx_validate_symm_contact.id _pdbx_validate_symm_contact.PDB_model_num _pdbx_validate_symm_contact.auth_atom_id_1 _pdbx_validate_symm_contact.auth_asym_id_1 _pdbx_validate_symm_contact.auth_comp_id_1 _pdbx_validate_symm_contact.auth_seq_id_1 _pdbx_validate_symm_contact.PDB_ins_code_1 _pdbx_validate_symm_contact.label_alt_id_1 _pdbx_validate_symm_contact.site_symmetry_1 _pdbx_validate_symm_contact.auth_atom_id_2 _pdbx_validate_symm_contact.auth_asym_id_2 _pdbx_validate_symm_contact.auth_comp_id_2 _pdbx_validate_symm_contact.auth_seq_id_2 _pdbx_validate_symm_contact.PDB_ins_code_2 _pdbx_validate_symm_contact.label_alt_id_2 _pdbx_validate_symm_contact.site_symmetry_2 _pdbx_validate_symm_contact.dist 1 1 "HO2'" A U 2653 ? ? 1_555 H22 A G 2661 ? ? 1_565 1.33 2 1 O A HOH 2782 ? ? 1_555 O A HOH 2791 ? ? 3_674 2.08 3 1 O A HOH 2703 ? ? 1_555 O A HOH 2776 ? ? 3_684 2.08 4 1 O A HOH 2848 ? ? 1_555 O A HOH 2903 ? ? 4_465 2.15 5 1 O A HOH 2893 ? ? 1_555 O A HOH 2906 ? ? 1_645 2.16 6 1 O A HOH 2900 ? ? 1_555 O A HOH 2909 ? ? 3_664 2.16 7 1 O A HOH 2902 ? ? 1_555 O A HOH 2904 ? ? 1_465 2.16 8 1 O A HOH 2782 ? ? 1_555 O A HOH 2873 ? ? 3_674 2.18 9 1 O A HOH 2890 ? ? 1_555 O A HOH 2901 ? ? 1_545 2.19 10 1 O A HOH 2763 ? ? 1_555 O A HOH 2800 ? ? 4_365 2.19 11 1 O A HOH 2797 ? ? 1_555 O A HOH 2836 ? ? 4_365 2.19 # _pdbx_validate_rmsd_angle.id 1 _pdbx_validate_rmsd_angle.PDB_model_num 1 _pdbx_validate_rmsd_angle.auth_atom_id_1 "O3'" _pdbx_validate_rmsd_angle.auth_asym_id_1 A _pdbx_validate_rmsd_angle.auth_comp_id_1 U _pdbx_validate_rmsd_angle.auth_seq_id_1 2650 _pdbx_validate_rmsd_angle.PDB_ins_code_1 ? _pdbx_validate_rmsd_angle.label_alt_id_1 ? _pdbx_validate_rmsd_angle.auth_atom_id_2 P _pdbx_validate_rmsd_angle.auth_asym_id_2 A _pdbx_validate_rmsd_angle.auth_comp_id_2 5HM _pdbx_validate_rmsd_angle.auth_seq_id_2 2651 _pdbx_validate_rmsd_angle.PDB_ins_code_2 ? _pdbx_validate_rmsd_angle.label_alt_id_2 ? _pdbx_validate_rmsd_angle.auth_atom_id_3 OP1 _pdbx_validate_rmsd_angle.auth_asym_id_3 A _pdbx_validate_rmsd_angle.auth_comp_id_3 5HM _pdbx_validate_rmsd_angle.auth_seq_id_3 2651 _pdbx_validate_rmsd_angle.PDB_ins_code_3 ? _pdbx_validate_rmsd_angle.label_alt_id_3 ? _pdbx_validate_rmsd_angle.angle_value 88.26 _pdbx_validate_rmsd_angle.angle_target_value 105.20 _pdbx_validate_rmsd_angle.angle_deviation -16.94 _pdbx_validate_rmsd_angle.angle_standard_deviation 2.20 _pdbx_validate_rmsd_angle.linker_flag Y # loop_ _pdbx_distant_solvent_atoms.id _pdbx_distant_solvent_atoms.PDB_model_num _pdbx_distant_solvent_atoms.auth_atom_id _pdbx_distant_solvent_atoms.label_alt_id _pdbx_distant_solvent_atoms.auth_asym_id _pdbx_distant_solvent_atoms.auth_comp_id _pdbx_distant_solvent_atoms.auth_seq_id _pdbx_distant_solvent_atoms.PDB_ins_code _pdbx_distant_solvent_atoms.neighbor_macromolecule_distance _pdbx_distant_solvent_atoms.neighbor_ligand_distance 1 1 O ? A HOH 2895 ? 5.83 . 2 1 O ? A HOH 2896 ? 5.86 . 3 1 O ? A HOH 2897 ? 5.91 . 4 1 O ? A HOH 2898 ? 5.94 . 5 1 O ? A HOH 2899 ? 6.02 . 6 1 O ? A HOH 2900 ? 6.17 . 7 1 O ? A HOH 2901 ? 6.31 . 8 1 O ? A HOH 2902 ? 6.32 . 9 1 O ? A HOH 2903 ? 6.38 . 10 1 O ? A HOH 2904 ? 6.70 . 11 1 O ? A HOH 2905 ? 6.74 . 12 1 O ? A HOH 2906 ? 6.83 . 13 1 O ? A HOH 2907 ? 7.14 . 14 1 O ? A HOH 2908 ? 8.24 . 15 1 O ? A HOH 2909 ? 8.93 . 16 1 O ? A HOH 2910 ? 9.38 . 17 1 O ? A HOH 2911 ? 10.42 . # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal 5HM OP3 O N N 1 5HM P P N N 2 5HM OP1 O N N 3 5HM OP2 O N N 4 5HM "O5'" O N N 5 5HM "C5'" C N N 6 5HM "C4'" C N R 7 5HM "O4'" O N N 8 5HM "C3'" C N S 9 5HM "O3'" O N N 10 5HM "C2'" C N R 11 5HM "O2'" O N N 12 5HM "C1'" C N R 13 5HM N1 N N N 14 5HM C2 C N N 15 5HM O2 O N N 16 5HM C6 C N N 17 5HM C5 C N N 18 5HM CM5 C N N 19 5HM OM5 O N N 20 5HM C4 C N N 21 5HM N3 N N N 22 5HM N4 N N N 23 5HM H1 H N N 24 5HM H2 H N N 25 5HM H3 H N N 26 5HM H4 H N N 27 5HM H5 H N N 28 5HM H6 H N N 29 5HM "HO3'" H N N 30 5HM H8 H N N 31 5HM H9 H N N 32 5HM H10 H N N 33 5HM H11 H N N 34 5HM H12 H N N 35 5HM H13 H N N 36 5HM H14 H N N 37 5HM H15 H N N 38 5HM H16 H N N 39 A OP3 O N N 40 A P P N N 41 A OP1 O N N 42 A OP2 O N N 43 A "O5'" O N N 44 A "C5'" C N N 45 A "C4'" C N R 46 A "O4'" O N N 47 A "C3'" C N S 48 A "O3'" O N N 49 A "C2'" C N R 50 A "O2'" O N N 51 A "C1'" C N R 52 A N9 N Y N 53 A C8 C Y N 54 A N7 N Y N 55 A C5 C Y N 56 A C6 C Y N 57 A N6 N N N 58 A N1 N Y N 59 A C2 C Y N 60 A N3 N Y N 61 A C4 C Y N 62 A HOP3 H N N 63 A HOP2 H N N 64 A "H5'" H N N 65 A "H5''" H N N 66 A "H4'" H N N 67 A "H3'" H N N 68 A "HO3'" H N N 69 A "H2'" H N N 70 A "HO2'" H N N 71 A "H1'" H N N 72 A H8 H N N 73 A H61 H N N 74 A H62 H N N 75 A H2 H N N 76 C OP3 O N N 77 C P P N N 78 C OP1 O N N 79 C OP2 O N N 80 C "O5'" O N N 81 C "C5'" C N N 82 C "C4'" C N R 83 C "O4'" O N N 84 C "C3'" C N S 85 C "O3'" O N N 86 C "C2'" C N R 87 C "O2'" O N N 88 C "C1'" C N R 89 C N1 N N N 90 C C2 C N N 91 C O2 O N N 92 C N3 N N N 93 C C4 C N N 94 C N4 N N N 95 C C5 C N N 96 C C6 C N N 97 C HOP3 H N N 98 C HOP2 H N N 99 C "H5'" H N N 100 C "H5''" H N N 101 C "H4'" H N N 102 C "H3'" H N N 103 C "HO3'" H N N 104 C "H2'" H N N 105 C "HO2'" H N N 106 C "H1'" H N N 107 C H41 H N N 108 C H42 H N N 109 C H5 H N N 110 C H6 H N N 111 G OP3 O N N 112 G P P N N 113 G OP1 O N N 114 G OP2 O N N 115 G "O5'" O N N 116 G "C5'" C N N 117 G "C4'" C N R 118 G "O4'" O N N 119 G "C3'" C N S 120 G "O3'" O N N 121 G "C2'" C N R 122 G "O2'" O N N 123 G "C1'" C N R 124 G N9 N Y N 125 G C8 C Y N 126 G N7 N Y N 127 G C5 C Y N 128 G C6 C N N 129 G O6 O N N 130 G N1 N N N 131 G C2 C N N 132 G N2 N N N 133 G N3 N N N 134 G C4 C Y N 135 G HOP3 H N N 136 G HOP2 H N N 137 G "H5'" H N N 138 G "H5''" H N N 139 G "H4'" H N N 140 G "H3'" H N N 141 G "HO3'" H N N 142 G "H2'" H N N 143 G "HO2'" H N N 144 G "H1'" H N N 145 G H8 H N N 146 G H1 H N N 147 G H21 H N N 148 G H22 H N N 149 HOH O O N N 150 HOH H1 H N N 151 HOH H2 H N N 152 U OP3 O N N 153 U P P N N 154 U OP1 O N N 155 U OP2 O N N 156 U "O5'" O N N 157 U "C5'" C N N 158 U "C4'" C N R 159 U "O4'" O N N 160 U "C3'" C N S 161 U "O3'" O N N 162 U "C2'" C N R 163 U "O2'" O N N 164 U "C1'" C N R 165 U N1 N N N 166 U C2 C N N 167 U O2 O N N 168 U N3 N N N 169 U C4 C N N 170 U O4 O N N 171 U C5 C N N 172 U C6 C N N 173 U HOP3 H N N 174 U HOP2 H N N 175 U "H5'" H N N 176 U "H5''" H N N 177 U "H4'" H N N 178 U "H3'" H N N 179 U "HO3'" H N N 180 U "H2'" H N N 181 U "HO2'" H N N 182 U "H1'" H N N 183 U H3 H N N 184 U H5 H N N 185 U H6 H N N 186 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal 5HM N4 C4 sing N N 1 5HM C4 N3 doub N N 2 5HM C4 C5 sing N N 3 5HM N3 C2 sing N N 4 5HM CM5 OM5 sing N N 5 5HM CM5 C5 sing N N 6 5HM C5 C6 doub N N 7 5HM C2 O2 doub N N 8 5HM C2 N1 sing N N 9 5HM C6 N1 sing N N 10 5HM N1 "C1'" sing N N 11 5HM OP1 P doub N N 12 5HM "C1'" "O4'" sing N N 13 5HM "C1'" "C2'" sing N N 14 5HM OP2 P sing N N 15 5HM "O4'" "C4'" sing N N 16 5HM "C2'" "O2'" sing N N 17 5HM "C2'" "C3'" sing N N 18 5HM P "O5'" sing N N 19 5HM P OP3 sing N N 20 5HM "O5'" "C5'" sing N N 21 5HM "C5'" "C4'" sing N N 22 5HM "C4'" "C3'" sing N N 23 5HM "C3'" "O3'" sing N N 24 5HM OP3 H1 sing N N 25 5HM OP2 H2 sing N N 26 5HM "C5'" H3 sing N N 27 5HM "C5'" H4 sing N N 28 5HM "C4'" H5 sing N N 29 5HM "C3'" H6 sing N N 30 5HM "O3'" "HO3'" sing N N 31 5HM "C2'" H8 sing N N 32 5HM "O2'" H9 sing N N 33 5HM "C1'" H10 sing N N 34 5HM C6 H11 sing N N 35 5HM CM5 H12 sing N N 36 5HM CM5 H13 sing N N 37 5HM OM5 H14 sing N N 38 5HM N4 H15 sing N N 39 5HM N4 H16 sing N N 40 A OP3 P sing N N 41 A OP3 HOP3 sing N N 42 A P OP1 doub N N 43 A P OP2 sing N N 44 A P "O5'" sing N N 45 A OP2 HOP2 sing N N 46 A "O5'" "C5'" sing N N 47 A "C5'" "C4'" sing N N 48 A "C5'" "H5'" sing N N 49 A "C5'" "H5''" sing N N 50 A "C4'" "O4'" sing N N 51 A "C4'" "C3'" sing N N 52 A "C4'" "H4'" sing N N 53 A "O4'" "C1'" sing N N 54 A "C3'" "O3'" sing N N 55 A "C3'" "C2'" sing N N 56 A "C3'" "H3'" sing N N 57 A "O3'" "HO3'" sing N N 58 A "C2'" "O2'" sing N N 59 A "C2'" "C1'" sing N N 60 A "C2'" "H2'" sing N N 61 A "O2'" "HO2'" sing N N 62 A "C1'" N9 sing N N 63 A "C1'" "H1'" sing N N 64 A N9 C8 sing Y N 65 A N9 C4 sing Y N 66 A C8 N7 doub Y N 67 A C8 H8 sing N N 68 A N7 C5 sing Y N 69 A C5 C6 sing Y N 70 A C5 C4 doub Y N 71 A C6 N6 sing N N 72 A C6 N1 doub Y N 73 A N6 H61 sing N N 74 A N6 H62 sing N N 75 A N1 C2 sing Y N 76 A C2 N3 doub Y N 77 A C2 H2 sing N N 78 A N3 C4 sing Y N 79 C OP3 P sing N N 80 C OP3 HOP3 sing N N 81 C P OP1 doub N N 82 C P OP2 sing N N 83 C P "O5'" sing N N 84 C OP2 HOP2 sing N N 85 C "O5'" "C5'" sing N N 86 C "C5'" "C4'" sing N N 87 C "C5'" "H5'" sing N N 88 C "C5'" "H5''" sing N N 89 C "C4'" "O4'" sing N N 90 C "C4'" "C3'" sing N N 91 C "C4'" "H4'" sing N N 92 C "O4'" "C1'" sing N N 93 C "C3'" "O3'" sing N N 94 C "C3'" "C2'" sing N N 95 C "C3'" "H3'" sing N N 96 C "O3'" "HO3'" sing N N 97 C "C2'" "O2'" sing N N 98 C "C2'" "C1'" sing N N 99 C "C2'" "H2'" sing N N 100 C "O2'" "HO2'" sing N N 101 C "C1'" N1 sing N N 102 C "C1'" "H1'" sing N N 103 C N1 C2 sing N N 104 C N1 C6 sing N N 105 C C2 O2 doub N N 106 C C2 N3 sing N N 107 C N3 C4 doub N N 108 C C4 N4 sing N N 109 C C4 C5 sing N N 110 C N4 H41 sing N N 111 C N4 H42 sing N N 112 C C5 C6 doub N N 113 C C5 H5 sing N N 114 C C6 H6 sing N N 115 G OP3 P sing N N 116 G OP3 HOP3 sing N N 117 G P OP1 doub N N 118 G P OP2 sing N N 119 G P "O5'" sing N N 120 G OP2 HOP2 sing N N 121 G "O5'" "C5'" sing N N 122 G "C5'" "C4'" sing N N 123 G "C5'" "H5'" sing N N 124 G "C5'" "H5''" sing N N 125 G "C4'" "O4'" sing N N 126 G "C4'" "C3'" sing N N 127 G "C4'" "H4'" sing N N 128 G "O4'" "C1'" sing N N 129 G "C3'" "O3'" sing N N 130 G "C3'" "C2'" sing N N 131 G "C3'" "H3'" sing N N 132 G "O3'" "HO3'" sing N N 133 G "C2'" "O2'" sing N N 134 G "C2'" "C1'" sing N N 135 G "C2'" "H2'" sing N N 136 G "O2'" "HO2'" sing N N 137 G "C1'" N9 sing N N 138 G "C1'" "H1'" sing N N 139 G N9 C8 sing Y N 140 G N9 C4 sing Y N 141 G C8 N7 doub Y N 142 G C8 H8 sing N N 143 G N7 C5 sing Y N 144 G C5 C6 sing N N 145 G C5 C4 doub Y N 146 G C6 O6 doub N N 147 G C6 N1 sing N N 148 G N1 C2 sing N N 149 G N1 H1 sing N N 150 G C2 N2 sing N N 151 G C2 N3 doub N N 152 G N2 H21 sing N N 153 G N2 H22 sing N N 154 G N3 C4 sing N N 155 HOH O H1 sing N N 156 HOH O H2 sing N N 157 U OP3 P sing N N 158 U OP3 HOP3 sing N N 159 U P OP1 doub N N 160 U P OP2 sing N N 161 U P "O5'" sing N N 162 U OP2 HOP2 sing N N 163 U "O5'" "C5'" sing N N 164 U "C5'" "C4'" sing N N 165 U "C5'" "H5'" sing N N 166 U "C5'" "H5''" sing N N 167 U "C4'" "O4'" sing N N 168 U "C4'" "C3'" sing N N 169 U "C4'" "H4'" sing N N 170 U "O4'" "C1'" sing N N 171 U "C3'" "O3'" sing N N 172 U "C3'" "C2'" sing N N 173 U "C3'" "H3'" sing N N 174 U "O3'" "HO3'" sing N N 175 U "C2'" "O2'" sing N N 176 U "C2'" "C1'" sing N N 177 U "C2'" "H2'" sing N N 178 U "O2'" "HO2'" sing N N 179 U "C1'" N1 sing N N 180 U "C1'" "H1'" sing N N 181 U N1 C2 sing N N 182 U N1 C6 sing N N 183 U C2 O2 doub N N 184 U C2 N3 sing N N 185 U N3 C4 sing N N 186 U N3 H3 sing N N 187 U C4 O4 doub N N 188 U C4 C5 sing N N 189 U C5 C6 doub N N 190 U C5 H5 sing N N 191 U C6 H6 sing N N 192 # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 5MRX 'double helix' 5MRX 'a-form double helix' 5MRX tetraloop 5MRX 'mismatched base pair' 5MRX 'internal loop' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A G 2 1_555 A U 26 1_555 -2.099 -0.386 0.414 3.333 -12.716 -0.366 1 A_G2648:U2672_A A 2648 ? A 2672 ? 28 1 1 A C 3 1_555 A G 25 1_555 -0.672 0.219 0.228 3.331 -17.688 3.681 2 A_C2649:G2671_A A 2649 ? A 2671 ? 19 1 1 A U 4 1_555 A A 24 1_555 -0.219 0.067 0.134 3.240 -12.112 -0.282 3 A_U2650:A2670_A A 2650 ? A 2670 ? 20 1 1 A 5HM 5 1_555 A G 23 1_555 0.541 0.039 0.288 3.292 -19.871 6.073 4 A_5HM2651:G2669_A A 2651 ? A 2669 ? 19 1 1 A C 6 1_555 A G 22 1_555 0.178 -0.094 0.140 -5.523 -11.671 -3.134 5 A_C2652:G2668_A A 2652 ? A 2668 ? 19 1 1 A U 7 1_555 A C 21 1_555 5.813 -2.169 -0.192 -7.195 -11.387 -14.374 6 A_U2653:C2667_A A 2653 ? A 2667 ? ? ? 1 A U 10 1_555 A A 19 1_555 4.045 -1.777 -0.790 6.100 -19.925 -104.616 7 A_U2656:A2665_A A 2656 ? A 2665 ? 24 4 1 A A 11 1_555 A G 18 1_555 -6.804 -4.264 -0.058 -1.573 4.847 -2.702 8 A_A2657:G2664_A A 2657 ? A 2664 ? 11 9 1 A C 12 1_555 A G 17 1_555 0.170 -0.131 -0.236 6.415 0.503 -0.154 9 A_C2658:G2663_A A 2658 ? A 2663 ? 19 1 1 A G 13 1_555 A A 16 1_555 7.254 -5.291 0.770 19.243 -3.617 -19.561 10 A_G2659:A2662_A A 2659 ? A 2662 ? ? ? # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A G 2 1_555 A U 26 1_555 A C 3 1_555 A G 25 1_555 -0.587 -1.272 3.180 -0.487 3.448 42.909 -2.060 0.754 3.080 4.704 0.665 43.044 1 AA_G2648C2649:G2671U2672_AA A 2648 ? A 2672 ? A 2649 ? A 2671 ? 1 A C 3 1_555 A G 25 1_555 A U 4 1_555 A A 24 1_555 0.326 -2.184 3.155 0.001 6.758 26.652 -6.065 -0.687 2.534 14.368 -0.001 27.481 2 AA_C2649U2650:A2670G2671_AA A 2649 ? A 2671 ? A 2650 ? A 2670 ? 1 A U 4 1_555 A A 24 1_555 A 5HM 5 1_555 A G 23 1_555 0.895 -1.227 3.130 0.946 3.130 38.510 -2.219 -1.243 3.045 4.736 -1.432 38.644 3 AA_U26505HM2651:G2669A2670_AA A 2650 ? A 2670 ? A 2651 ? A 2669 ? 1 A 5HM 5 1_555 A G 23 1_555 A C 6 1_555 A G 22 1_555 -0.920 -2.127 3.250 0.608 9.139 29.799 -5.526 1.817 2.486 17.264 -1.149 31.144 4 AA_5HM2651C2652:G2668G2669_AA A 2651 ? A 2669 ? A 2652 ? A 2668 ? 1 A C 6 1_555 A G 22 1_555 A U 7 1_555 A C 21 1_555 -0.563 -1.120 3.496 7.501 9.621 55.005 -1.753 1.038 3.180 10.276 -8.011 56.238 5 AA_C2652U2653:C2667G2668_AA A 2652 ? A 2668 ? A 2653 ? A 2667 ? 1 A U 7 1_555 A C 21 1_555 A U 10 1_555 A A 19 1_555 0.492 -0.954 6.106 4.935 -4.873 32.899 -0.136 0.683 6.187 -8.487 -8.595 33.603 6 AA_U2653U2656:A2665C2667_AA A 2653 ? A 2667 ? A 2656 ? A 2665 ? 1 A U 10 1_555 A A 19 1_555 A A 11 1_555 A G 18 1_555 5.256 -1.399 3.532 -2.084 -1.790 -11.768 9.372 21.799 4.137 8.576 -9.985 -12.083 7 AA_U2656A2657:G2664A2665_AA A 2656 ? A 2665 ? A 2657 ? A 2664 ? 1 A A 11 1_555 A G 18 1_555 A C 12 1_555 A G 17 1_555 -0.103 -1.179 3.168 -1.554 3.697 59.379 -1.366 0.029 3.098 3.727 1.567 59.502 8 AA_A2657C2658:G2663G2664_AA A 2657 ? A 2664 ? A 2658 ? A 2663 ? 1 A C 12 1_555 A G 17 1_555 A G 13 1_555 A A 16 1_555 -2.595 -1.300 2.944 -6.854 6.820 50.446 -1.936 2.561 3.060 7.919 7.958 51.304 9 AA_C2658G2659:A2662G2663_AA A 2658 ? A 2663 ? A 2659 ? A 2662 ? # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 3DVZ _pdbx_initial_refinement_model.details ? # _atom_sites.entry_id 5MRX _atom_sites.fract_transf_matrix[1][1] 0.033887 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.033887 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.013021 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C H N O P # loop_