HEADER HYDROLASE 30-DEC-16 5MS2 TITLE CRYSTAL STRUCTURE OF THE LEGIONELLA PNEUMOPHILA EFFECTOR PROTEIN RAVZ TITLE 2 IN COMPLEX WITH HUMAN LC3B COMPND MOL_ID: 1; COMPND 2 MOLECULE: LEGIONELLA PNEUMOPHILA EFFECTOR PROTEIN RAVZ; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: MICROTUBULE-ASSOCIATED PROTEINS 1A/1B LIGHT CHAIN 3B; COMPND 7 CHAIN: B; COMPND 8 SYNONYM: AUTOPHAGY-RELATED PROTEIN LC3 B,AUTOPHAGY-RELATED UBIQUITIN- COMPND 9 LIKE MODIFIER LC3 B,MAP1 LIGHT CHAIN 3-LIKE PROTEIN 2,MAP1A/MAP1B COMPND 10 LIGHT CHAIN 3 B,MAP1A/MAP1B LC3 B,MICROTUBULE-ASSOCIATED PROTEIN 1 COMPND 11 LIGHT CHAIN 3 BETA; COMPND 12 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: LEGIONELLA PNEUMOPHILA SUBSP. PNEUMOPHILA STR. SOURCE 3 PHILADELPHIA 1; SOURCE 4 ORGANISM_TAXID: 272624; SOURCE 5 GENE: LPG1683; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_VECTOR: POPIN; SOURCE 10 MOL_ID: 2; SOURCE 11 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 12 ORGANISM_COMMON: HUMAN; SOURCE 13 ORGANISM_TAXID: 9606; SOURCE 14 GENE: MAP1LC3B, MAP1ALC3; SOURCE 15 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21; SOURCE 16 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 17 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 18 EXPRESSION_SYSTEM_VECTOR: PMAL KEYWDS HYDROLASE, AUTOPHAGY, HOST-PATHOGEN INTERACTION EXPDTA X-RAY DIFFRACTION AUTHOR S.PANTOOM,I.R.VETTER,Y.W.WU REVDAT 4 17-JAN-24 5MS2 1 REMARK REVDAT 3 16-OCT-19 5MS2 1 REMARK REVDAT 2 26-APR-17 5MS2 1 JRNL REVDAT 1 19-APR-17 5MS2 0 JRNL AUTH A.YANG,S.PANTOOM,Y.W.WU JRNL TITL ELUCIDATION OF THE ANTI-AUTOPHAGY MECHANISM OF THE JRNL TITL 2 LEGIONELLA EFFECTOR RAVZ USING SEMISYNTHETIC LC3 PROTEINS. JRNL REF ELIFE V. 6 2017 JRNL REFN ESSN 2050-084X JRNL PMID 28395732 JRNL DOI 10.7554/ELIFE.23905 REMARK 2 REMARK 2 RESOLUTION. 2.47 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.9_1692 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.47 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 48.08 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.380 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 22607 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.181 REMARK 3 R VALUE (WORKING SET) : 0.177 REMARK 3 FREE R VALUE : 0.238 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1131 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 48.0890 - 4.9385 1.00 2754 146 0.1685 0.2204 REMARK 3 2 4.9385 - 3.9204 1.00 2688 141 0.1393 0.1997 REMARK 3 3 3.9204 - 3.4250 1.00 2702 142 0.1561 0.2185 REMARK 3 4 3.4250 - 3.1119 1.00 2672 140 0.1802 0.2412 REMARK 3 5 3.1119 - 2.8889 1.00 2664 141 0.1940 0.2587 REMARK 3 6 2.8889 - 2.7186 1.00 2679 141 0.2136 0.2969 REMARK 3 7 2.7186 - 2.5824 1.00 2645 139 0.2283 0.2903 REMARK 3 8 2.5824 - 2.4700 1.00 2672 141 0.2428 0.2986 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.290 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 23.220 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 29.26 REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.010 4251 REMARK 3 ANGLE : 1.446 5742 REMARK 3 CHIRALITY : 0.057 648 REMARK 3 PLANARITY : 0.007 735 REMARK 3 DIHEDRAL : 17.096 1608 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 13 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 25 THROUGH 74 ) REMARK 3 ORIGIN FOR THE GROUP (A): -22.9077 -11.8276 -10.7976 REMARK 3 T TENSOR REMARK 3 T11: 0.2275 T22: 0.2219 REMARK 3 T33: 0.2250 T12: 0.0554 REMARK 3 T13: 0.0946 T23: 0.0179 REMARK 3 L TENSOR REMARK 3 L11: 7.9846 L22: 5.4453 REMARK 3 L33: 1.2554 L12: -4.4641 REMARK 3 L13: 2.0328 L23: -0.7410 REMARK 3 S TENSOR REMARK 3 S11: 0.3342 S12: 0.0970 S13: -0.0490 REMARK 3 S21: -0.1296 S22: -0.2244 S23: 0.3378 REMARK 3 S31: -0.1310 S32: -0.3121 S33: -0.1034 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 75 THROUGH 275 ) REMARK 3 ORIGIN FOR THE GROUP (A): -6.0867 -33.6655 -6.2996 REMARK 3 T TENSOR REMARK 3 T11: 0.1038 T22: 0.1428 REMARK 3 T33: 0.2829 T12: 0.0443 REMARK 3 T13: -0.0221 T23: -0.0054 REMARK 3 L TENSOR REMARK 3 L11: 1.6734 L22: 3.0016 REMARK 3 L33: 2.7065 L12: 0.6268 REMARK 3 L13: -0.9958 L23: -1.0876 REMARK 3 S TENSOR REMARK 3 S11: 0.0156 S12: 0.0410 S13: -0.2391 REMARK 3 S21: -0.1327 S22: -0.0488 S23: -0.2433 REMARK 3 S31: 0.0994 S32: 0.0287 S33: -0.0099 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 276 THROUGH 429 ) REMARK 3 ORIGIN FOR THE GROUP (A): -14.7147 -1.5830 -11.1442 REMARK 3 T TENSOR REMARK 3 T11: 0.1869 T22: 0.1974 REMARK 3 T33: 0.2678 T12: 0.0309 REMARK 3 T13: 0.0419 T23: 0.0578 REMARK 3 L TENSOR REMARK 3 L11: 2.7109 L22: 3.3380 REMARK 3 L33: 0.2165 L12: -1.3394 REMARK 3 L13: 0.1614 L23: -0.0171 REMARK 3 S TENSOR REMARK 3 S11: 0.0660 S12: 0.2406 S13: 0.4963 REMARK 3 S21: -0.3571 S22: -0.1813 S23: -0.3059 REMARK 3 S31: -0.1215 S32: 0.0375 S33: 0.1211 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 5 THROUGH 12 ) REMARK 3 ORIGIN FOR THE GROUP (A): -41.4879 0.9958 -54.8847 REMARK 3 T TENSOR REMARK 3 T11: 0.7773 T22: 0.6313 REMARK 3 T33: 0.3278 T12: -0.1665 REMARK 3 T13: 0.0419 T23: -0.0410 REMARK 3 L TENSOR REMARK 3 L11: 6.3417 L22: 4.3623 REMARK 3 L33: 8.3834 L12: 0.1572 REMARK 3 L13: 4.7416 L23: -3.4665 REMARK 3 S TENSOR REMARK 3 S11: 0.3934 S12: -0.7515 S13: -0.5125 REMARK 3 S21: 0.4667 S22: 0.5768 S23: 0.4584 REMARK 3 S31: 1.3091 S32: -1.3050 S33: -0.8511 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 13 THROUGH 21 ) REMARK 3 ORIGIN FOR THE GROUP (A): -44.7894 11.6881 -55.8763 REMARK 3 T TENSOR REMARK 3 T11: 0.6282 T22: 1.1194 REMARK 3 T33: 0.4873 T12: 0.1318 REMARK 3 T13: 0.0774 T23: -0.0237 REMARK 3 L TENSOR REMARK 3 L11: 3.1296 L22: 7.0082 REMARK 3 L33: 1.4525 L12: 3.5683 REMARK 3 L13: 0.2485 L23: -1.1120 REMARK 3 S TENSOR REMARK 3 S11: 0.1255 S12: -2.5533 S13: 0.8305 REMARK 3 S21: 0.9659 S22: 0.0016 S23: 1.2581 REMARK 3 S31: -1.5895 S32: -2.6877 S33: -0.1016 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 22 THROUGH 30 ) REMARK 3 ORIGIN FOR THE GROUP (A): -49.7081 16.8835 -44.1570 REMARK 3 T TENSOR REMARK 3 T11: 1.7226 T22: 2.0267 REMARK 3 T33: 0.8191 T12: 1.0043 REMARK 3 T13: -0.2756 T23: -0.1271 REMARK 3 L TENSOR REMARK 3 L11: 3.4906 L22: 1.5091 REMARK 3 L33: 4.3169 L12: 1.7495 REMARK 3 L13: 2.5464 L23: 0.0295 REMARK 3 S TENSOR REMARK 3 S11: -0.5357 S12: 0.9527 S13: 0.8238 REMARK 3 S21: -0.7812 S22: 0.3871 S23: 0.9266 REMARK 3 S31: -1.4799 S32: -1.2323 S33: 0.1626 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 31 THROUGH 59 ) REMARK 3 ORIGIN FOR THE GROUP (A): -38.9571 1.1673 -41.3482 REMARK 3 T TENSOR REMARK 3 T11: 0.7172 T22: 1.0126 REMARK 3 T33: 0.3035 T12: 0.0651 REMARK 3 T13: 0.0536 T23: 0.1091 REMARK 3 L TENSOR REMARK 3 L11: 5.3628 L22: 6.1679 REMARK 3 L33: 8.5835 L12: -0.1301 REMARK 3 L13: 2.1659 L23: -0.6590 REMARK 3 S TENSOR REMARK 3 S11: -0.1097 S12: -0.2987 S13: -0.1696 REMARK 3 S21: -0.1213 S22: -0.1410 S23: 0.4917 REMARK 3 S31: 0.4015 S32: -1.8238 S33: 0.2102 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 60 THROUGH 70 ) REMARK 3 ORIGIN FOR THE GROUP (A): -39.1213 2.3509 -32.0359 REMARK 3 T TENSOR REMARK 3 T11: 1.0005 T22: 0.9988 REMARK 3 T33: -0.0431 T12: 0.1020 REMARK 3 T13: -0.0865 T23: -0.2229 REMARK 3 L TENSOR REMARK 3 L11: 2.9754 L22: 4.7865 REMARK 3 L33: 3.6291 L12: 0.7381 REMARK 3 L13: -2.7394 L23: -2.9403 REMARK 3 S TENSOR REMARK 3 S11: 0.2567 S12: -0.3255 S13: 0.0590 REMARK 3 S21: 0.4904 S22: -0.2013 S23: 0.2122 REMARK 3 S31: 0.3661 S32: -0.7008 S33: 0.0099 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 71 THROUGH 83 ) REMARK 3 ORIGIN FOR THE GROUP (A): -33.2285 -3.5293 -33.1511 REMARK 3 T TENSOR REMARK 3 T11: 0.9849 T22: 0.8717 REMARK 3 T33: 0.9676 T12: 0.1311 REMARK 3 T13: -0.0487 T23: 0.2306 REMARK 3 L TENSOR REMARK 3 L11: 2.0018 L22: 3.1721 REMARK 3 L33: 8.9216 L12: -2.0231 REMARK 3 L13: 3.2200 L23: -5.3118 REMARK 3 S TENSOR REMARK 3 S11: -0.1217 S12: -0.8386 S13: -1.3183 REMARK 3 S21: 0.2206 S22: -0.3048 S23: -0.2995 REMARK 3 S31: 1.0105 S32: -0.2429 S33: 0.3562 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 84 THROUGH 94 ) REMARK 3 ORIGIN FOR THE GROUP (A): -28.6273 10.0960 -37.8026 REMARK 3 T TENSOR REMARK 3 T11: 1.4827 T22: 1.1797 REMARK 3 T33: 0.7807 T12: 0.6286 REMARK 3 T13: -0.2519 T23: -0.0652 REMARK 3 L TENSOR REMARK 3 L11: 8.7440 L22: 9.3606 REMARK 3 L33: 6.3994 L12: -7.1564 REMARK 3 L13: -7.0505 L23: 7.3530 REMARK 3 S TENSOR REMARK 3 S11: -0.6403 S12: 0.5523 S13: 0.9207 REMARK 3 S21: 0.5131 S22: -0.0455 S23: -1.3452 REMARK 3 S31: -0.3510 S32: 0.4283 S33: 0.6222 REMARK 3 TLS GROUP : 11 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 95 THROUGH 102 ) REMARK 3 ORIGIN FOR THE GROUP (A): -34.1072 15.8791 -41.5265 REMARK 3 T TENSOR REMARK 3 T11: 1.4141 T22: 0.7194 REMARK 3 T33: 0.7317 T12: 0.0449 REMARK 3 T13: -0.3504 T23: -0.0076 REMARK 3 L TENSOR REMARK 3 L11: 0.5204 L22: 4.4690 REMARK 3 L33: 7.3378 L12: 0.1114 REMARK 3 L13: 0.2002 L23: 5.7248 REMARK 3 S TENSOR REMARK 3 S11: -0.0149 S12: -0.4306 S13: 0.8438 REMARK 3 S21: 0.4474 S22: -0.0966 S23: -0.3636 REMARK 3 S31: -1.0144 S32: 0.2731 S33: 0.0955 REMARK 3 TLS GROUP : 12 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 103 THROUGH 114 ) REMARK 3 ORIGIN FOR THE GROUP (A): -36.2634 7.4359 -47.3682 REMARK 3 T TENSOR REMARK 3 T11: 0.8785 T22: 0.6058 REMARK 3 T33: 0.3086 T12: 0.1473 REMARK 3 T13: -0.0275 T23: -0.1248 REMARK 3 L TENSOR REMARK 3 L11: 5.6638 L22: 6.9268 REMARK 3 L33: 6.7616 L12: -2.6808 REMARK 3 L13: 2.0897 L23: -4.5859 REMARK 3 S TENSOR REMARK 3 S11: -0.6213 S12: -0.1634 S13: 0.3861 REMARK 3 S21: -0.5172 S22: 0.0476 S23: -0.1152 REMARK 3 S31: 0.3220 S32: -0.9269 S33: 0.4872 REMARK 3 TLS GROUP : 13 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 115 THROUGH 119 ) REMARK 3 ORIGIN FOR THE GROUP (A): -23.8212 -3.5100 -41.7320 REMARK 3 T TENSOR REMARK 3 T11: 1.1122 T22: 1.2140 REMARK 3 T33: 1.4652 T12: 0.3353 REMARK 3 T13: 0.3433 T23: 0.2762 REMARK 3 L TENSOR REMARK 3 L11: 4.5937 L22: 3.5196 REMARK 3 L33: 4.2573 L12: 4.0211 REMARK 3 L13: -4.4210 L23: -3.8702 REMARK 3 S TENSOR REMARK 3 S11: -0.9806 S12: 0.0633 S13: -0.9316 REMARK 3 S21: -1.9537 S22: 0.2694 S23: -2.6525 REMARK 3 S31: 1.5247 S32: 2.0066 S33: 0.8223 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5MS2 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 03-JAN-17. REMARK 100 THE DEPOSITION ID IS D_1200000800. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 03-MAR-16 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SLS REMARK 200 BEAMLINE : X10SA REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97857 REMARK 200 MONOCHROMATOR : SI (111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : PSI PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 22607 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.470 REMARK 200 RESOLUTION RANGE LOW (A) : 48.080 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 6.800 REMARK 200 R MERGE (I) : 0.18000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 9.5100 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.47 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.56 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.4 REMARK 200 DATA REDUNDANCY IN SHELL : 6.50 REMARK 200 R MERGE FOR SHELL (I) : 0.72000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.570 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 5CQC, 2Z0D REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 54.18 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.68 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.17 M AMMONIUM ACETATE, 0.085M TRI REMARK 280 SODIUM CITRATE, 25.5% PEG 4000 AND 15% GLYCEROL, PH 5.6, VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 277.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 34.77500 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 600 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 26780 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -2.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -1 REMARK 465 PRO A 0 REMARK 465 MET A 1 REMARK 465 LYS A 2 REMARK 465 GLY A 3 REMARK 465 LYS A 4 REMARK 465 LEU A 5 REMARK 465 THR A 6 REMARK 465 GLY A 7 REMARK 465 LYS A 8 REMARK 465 ASP A 9 REMARK 465 LYS A 10 REMARK 465 LEU A 11 REMARK 465 ILE A 12 REMARK 465 VAL A 13 REMARK 465 ASP A 14 REMARK 465 GLU A 15 REMARK 465 PHE A 16 REMARK 465 GLU A 17 REMARK 465 GLU A 18 REMARK 465 LEU A 19 REMARK 465 GLY A 20 REMARK 465 GLU A 21 REMARK 465 GLN A 22 REMARK 465 GLU A 23 REMARK 465 SER A 24 REMARK 465 ASP A 430 REMARK 465 THR A 431 REMARK 465 GLY B -4 REMARK 465 HIS B -3 REMARK 465 MET B -2 REMARK 465 GLY B -1 REMARK 465 CYS B 0 REMARK 465 MET B 1 REMARK 465 PRO B 2 REMARK 465 SER B 3 REMARK 465 GLU B 4 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OG SER B 87 O HOH B 201 2.02 REMARK 500 OD1 ASN B 76 O HOH B 202 2.03 REMARK 500 OD1 ASN A 251 OG SER A 289 2.04 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 OD2 ASP A 25 OG SER A 207 2455 2.03 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 PHE A 29 CA - C - O ANGL. DEV. = 16.0 DEGREES REMARK 500 PHE A 29 CA - C - N ANGL. DEV. = -16.0 DEGREES REMARK 500 ASN A 251 N - CA - C ANGL. DEV. = -24.5 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ILE A 26 -62.48 -130.72 REMARK 500 GLU A 28 -82.27 -108.36 REMARK 500 HIS A 249 -71.57 -53.07 REMARK 500 TYR A 292 -67.39 -90.90 REMARK 500 SER A 400 -136.99 55.70 REMARK 500 ALA B 75 -4.11 82.20 REMARK 500 ASN B 84 -122.56 62.84 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 GLN A 250 ASN A 251 140.39 REMARK 500 ARG B 21 LEU B 22 145.00 REMARK 500 LEU B 22 ILE B 23 129.77 REMARK 500 ASP B 48 LYS B 49 125.52 REMARK 500 LEU B 73 ASN B 74 -147.85 REMARK 500 REMARK 500 REMARK: NULL DBREF 5MS2 A 1 431 UNP Q5ZUV9 Q5ZUV9_LEGPH 1 431 DBREF 5MS2 B 1 119 UNP Q9GZQ8 MLP3B_HUMAN 1 119 SEQADV 5MS2 GLY A -1 UNP Q5ZUV9 EXPRESSION TAG SEQADV 5MS2 PRO A 0 UNP Q5ZUV9 EXPRESSION TAG SEQADV 5MS2 GLY B -4 UNP Q9GZQ8 EXPRESSION TAG SEQADV 5MS2 HIS B -3 UNP Q9GZQ8 EXPRESSION TAG SEQADV 5MS2 MET B -2 UNP Q9GZQ8 EXPRESSION TAG SEQADV 5MS2 GLY B -1 UNP Q9GZQ8 EXPRESSION TAG SEQADV 5MS2 CYS B 0 UNP Q9GZQ8 EXPRESSION TAG SEQRES 1 A 433 GLY PRO MET LYS GLY LYS LEU THR GLY LYS ASP LYS LEU SEQRES 2 A 433 ILE VAL ASP GLU PHE GLU GLU LEU GLY GLU GLN GLU SER SEQRES 3 A 433 ASP ILE ASP GLU PHE ASP LEU LEU GLU GLY ASP GLU LYS SEQRES 4 A 433 LEU PRO GLY ASP SER GLU LEU ASP LYS THR THR SER ILE SEQRES 5 A 433 TYR PRO PRO GLU THR SER TRP GLU VAL ASN LYS GLY MET SEQRES 6 A 433 ASN SER SER ARG LEU HIS LYS LEU TYR SER LEU PHE PHE SEQRES 7 A 433 ASP LYS SER SER ALA PHE TYR LEU GLY ASP ASP VAL SER SEQRES 8 A 433 VAL LEU GLU ASP LYS PRO LEU THR GLY ALA TYR GLY PHE SEQRES 9 A 433 GLN SER LYS LYS ASN ASP GLN GLN ILE PHE LEU PHE ARG SEQRES 10 A 433 PRO ASP SER ASP TYR VAL ALA GLY TYR HIS VAL ASP ALA SEQRES 11 A 433 LYS SER ASP ALA GLY TRP VAL ASN ASP LYS LEU ASP ARG SEQRES 12 A 433 ARG LEU SER GLU ILE SER GLU PHE CYS SER LYS ALA THR SEQRES 13 A 433 GLN PRO ALA THR PHE ILE LEU PRO PHE VAL GLU MET PRO SEQRES 14 A 433 THR ASP ILE THR LYS GLY VAL GLN HIS GLN VAL LEU LEU SEQRES 15 A 433 THR ILE SER TYR ASP PRO LYS SER LYS GLN LEU THR PRO SEQRES 16 A 433 THR VAL TYR ASP SER ILE GLY ARG ASP THR TYR SER GLU SEQRES 17 A 433 SER LEU SER SER TYR PHE LYS GLY LYS TYR ARG THR THR SEQRES 18 A 433 CYS ASP GLU ILE LEU THR GLN SER ILE GLU LYS ALA ILE SEQRES 19 A 433 LYS SER THR ASP PHE THR LEU GLY LYS PHE THR ARG ALA SEQRES 20 A 433 ALA TYR ASN HIS GLN ASN ARG LEU THR GLU GLY ASN CYS SEQRES 21 A 433 GLY SER TYR THR PHE ARG THR ILE LYS GLU VAL ILE SER SEQRES 22 A 433 SER SER ALA GLN GLY THR GLU VAL LYS ILE PRO GLY SER SEQRES 23 A 433 GLY TYR ILE THR SER ASN SER TYR LEU THR SER GLN HIS SEQRES 24 A 433 VAL GLN ASP ILE GLU SER CYS ILE LYS TYR ARG ASN LEU SEQRES 25 A 433 GLY VAL VAL ASP ILE GLU SER ALA LEU THR GLU GLY LYS SEQRES 26 A 433 THR LEU PRO VAL GLN LEU SER GLU PHE ILE VAL ALA LEU SEQRES 27 A 433 GLU ASP TYR GLY LYS LEU ARG SER GLN GLN SER GLU LYS SEQRES 28 A 433 SER MET LEU ASN PHE ILE GLY TYR SER LYS THR ALA LYS SEQRES 29 A 433 LEU THR ALA VAL GLU LEU LEU ILE GLY ILE LEU ASN ASP SEQRES 30 A 433 ILE LYS GLY LYS ASN GLU ILE SER GLU SER GLN TYR ASP SEQRES 31 A 433 LYS LEU VAL LYS GLU VAL ASP CYS LEU MET ASP SER SER SEQRES 32 A 433 LEU GLY LYS LEU VAL GLN PHE HIS LEU LYS ASN LEU GLY SEQRES 33 A 433 ALA GLU SER LEU GLN LYS LEU VAL LEU PRO CYS VAL LYS SEQRES 34 A 433 PHE ASP ASP THR SEQRES 1 B 124 GLY HIS MET GLY CYS MET PRO SER GLU LYS THR PHE LYS SEQRES 2 B 124 GLN ARG ARG THR PHE GLU GLN ARG VAL GLU ASP VAL ARG SEQRES 3 B 124 LEU ILE ARG GLU GLN HIS PRO THR LYS ILE PRO VAL ILE SEQRES 4 B 124 ILE GLU ARG TYR LYS GLY GLU LYS GLN LEU PRO VAL LEU SEQRES 5 B 124 ASP LYS THR LYS PHE LEU VAL PRO ASP HIS VAL ASN MET SEQRES 6 B 124 SER GLU LEU ILE LYS ILE ILE ARG ARG ARG LEU GLN LEU SEQRES 7 B 124 ASN ALA ASN GLN ALA PHE PHE LEU LEU VAL ASN GLY HIS SEQRES 8 B 124 SER MET VAL SER VAL SER THR PRO ILE SER GLU VAL TYR SEQRES 9 B 124 GLU SER GLU LYS ASP GLU ASP GLY PHE LEU TYR MET VAL SEQRES 10 B 124 TYR ALA SER GLN GLU THR PHE FORMUL 3 HOH *111(H2 O) HELIX 1 AA1 GLU A 33 LYS A 37 5 5 HELIX 2 AA2 GLY A 40 LEU A 44 5 5 HELIX 3 AA3 GLU A 58 GLY A 62 5 5 HELIX 4 AA4 ASN A 64 TYR A 72 1 9 HELIX 5 AA5 SER A 73 PHE A 75 5 3 HELIX 6 AA6 ASN A 136 ALA A 153 1 18 HELIX 7 AA7 SER A 205 PHE A 212 1 8 HELIX 8 AA8 CYS A 220 LYS A 233 1 14 HELIX 9 AA9 THR A 254 GLY A 276 1 23 HELIX 10 AB1 THR A 288 LEU A 293 1 6 HELIX 11 AB2 THR A 294 ARG A 308 1 15 HELIX 12 AB3 VAL A 312 GLY A 322 1 11 HELIX 13 AB4 GLN A 328 GLN A 346 1 19 HELIX 14 AB5 SER A 358 ASN A 380 1 23 HELIX 15 AB6 GLU A 384 MET A 398 1 15 HELIX 16 AB7 ASP A 399 LEU A 413 1 15 HELIX 17 AB8 SER A 417 LEU A 423 1 7 HELIX 18 AB9 THR B 6 ARG B 11 1 6 HELIX 19 AC1 THR B 12 LEU B 22 1 11 HELIX 20 AC2 ASN B 59 LEU B 71 1 13 HELIX 21 AC3 PRO B 94 LYS B 103 1 10 SHEET 1 AA1 2 ILE A 50 TYR A 51 0 SHEET 2 AA1 2 LEU A 310 GLY A 311 -1 O LEU A 310 N TYR A 51 SHEET 1 AA2 7 VAL A 88 VAL A 90 0 SHEET 2 AA2 7 ALA A 99 SER A 104 -1 O GLN A 103 N SER A 89 SHEET 3 AA2 7 GLN A 110 PHE A 114 -1 O ILE A 111 N PHE A 102 SHEET 4 AA2 7 ALA A 157 PRO A 167 1 O THR A 158 N PHE A 112 SHEET 5 AA2 7 HIS A 176 ASP A 185 -1 O LEU A 180 N LEU A 161 SHEET 6 AA2 7 GLN A 190 SER A 198 -1 O THR A 194 N THR A 181 SHEET 7 AA2 7 THR A 238 LEU A 239 1 O THR A 238 N LEU A 191 SHEET 1 AA3 6 TRP A 134 VAL A 135 0 SHEET 2 AA3 6 VAL A 121 TYR A 124 -1 N GLY A 123 O TRP A 134 SHEET 3 AA3 6 ALA A 157 PRO A 167 1 O MET A 166 N ALA A 122 SHEET 4 AA3 6 HIS A 176 ASP A 185 -1 O LEU A 180 N LEU A 161 SHEET 5 AA3 6 GLN A 190 SER A 198 -1 O THR A 194 N THR A 181 SHEET 6 AA3 6 THR A 243 TYR A 247 1 O THR A 243 N VAL A 195 SHEET 1 AA4 2 ILE A 281 PRO A 282 0 SHEET 2 AA4 2 GLY A 285 TYR A 286 1 N TYR A 286 O ILE A 281 SHEET 1 AA5 2 ILE A 382 SER A 383 0 SHEET 2 AA5 2 VAL A 426 LYS A 427 1 O LYS A 427 N ILE A 382 SHEET 1 AA6 4 LYS B 51 VAL B 54 0 SHEET 2 AA6 4 ILE B 31 ARG B 37 -1 N ILE B 31 O VAL B 54 SHEET 3 AA6 4 LEU B 109 ALA B 114 1 O MET B 111 N ILE B 34 SHEET 4 AA6 4 PHE B 80 VAL B 83 -1 N LEU B 82 O VAL B 112 CRYST1 51.550 69.550 90.170 90.00 101.08 90.00 P 1 21 1 2 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.019399 0.000000 0.003799 0.00000 SCALE2 0.000000 0.014378 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011301 0.00000