HEADER PROTEIN BINDING 31-DEC-16 5MS5 TITLE LOW-SALT STRUCTURE OF RAVZ LIR2-FUSED HUMAN LC3B COMPND MOL_ID: 1; COMPND 2 MOLECULE: RAVZ,MICROTUBULE-ASSOCIATED PROTEINS 1A/1B LIGHT CHAIN 3B; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: AUTOPHAGY-RELATED PROTEIN LC3 B,AUTOPHAGY-RELATED UBIQUITIN- COMPND 5 LIKE MODIFIER LC3 B,MAP1 LIGHT CHAIN 3-LIKE PROTEIN 2,MAP1A/MAP1B COMPND 6 LIGHT CHAIN 3 B,MAP1A/MAP1B LC3 B,MICROTUBULE-ASSOCIATED PROTEIN 1 COMPND 7 LIGHT CHAIN 3 BETA; COMPND 8 ENGINEERED: YES; COMPND 9 OTHER_DETAILS: THE FUSION PROTEIN OF RAVZ LIR (RESIDUES 25-36) AND COMPND 10 MICROTUBULE-ASSOCIATED PROTEINS 1A/1B LIGHT CHAIN 3B (RESIDUES 2-119) SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: LEGIONELLA PNEUMOPHILA, HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 446, 9606; SOURCE 5 GENE: LPG1683, MAP1LC3B, MAP1ALC3; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PMAL KEYWDS AUTOPHAGY / HOST-PATHOGEN INTERACTION / PROTEIN BINDING /RAVZ / LIR / KEYWDS 2 LC3, PROTEIN BINDING EXPDTA X-RAY DIFFRACTION AUTHOR S.PANTOOM,I.R.VETTER,Y.W.WU REVDAT 3 17-JAN-24 5MS5 1 REMARK REVDAT 2 26-APR-17 5MS5 1 JRNL REVDAT 1 19-APR-17 5MS5 0 JRNL AUTH A.YANG,S.PANTOOM,Y.W.WU JRNL TITL ELUCIDATION OF THE ANTI-AUTOPHAGY MECHANISM OF THE JRNL TITL 2 LEGIONELLA EFFECTOR RAVZ USING SEMISYNTHETIC LC3 PROTEINS. JRNL REF ELIFE V. 6 2017 JRNL REFN ESSN 2050-084X JRNL PMID 28395732 JRNL DOI 10.7554/ELIFE.23905 REMARK 2 REMARK 2 RESOLUTION. 1.53 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.9_1692 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.53 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 49.22 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.360 REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 44237 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.210 REMARK 3 R VALUE (WORKING SET) : 0.208 REMARK 3 FREE R VALUE : 0.243 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 2214 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 49.2472 - 3.8548 1.00 2864 152 0.1709 0.1993 REMARK 3 2 3.8548 - 3.0598 1.00 2703 142 0.1724 0.1991 REMARK 3 3 3.0598 - 2.6730 1.00 2654 140 0.1920 0.2327 REMARK 3 4 2.6730 - 2.4287 1.00 2656 141 0.1958 0.2225 REMARK 3 5 2.4287 - 2.2546 1.00 2622 138 0.1786 0.2318 REMARK 3 6 2.2546 - 2.1216 1.00 2625 138 0.1845 0.2311 REMARK 3 7 2.1216 - 2.0154 1.00 2609 138 0.1984 0.2688 REMARK 3 8 2.0154 - 1.9277 1.00 2598 137 0.2157 0.2701 REMARK 3 9 1.9277 - 1.8534 1.00 2602 137 0.2350 0.2653 REMARK 3 10 1.8534 - 1.7895 1.00 2584 136 0.2789 0.3182 REMARK 3 11 1.7895 - 1.7335 1.00 2592 135 0.3043 0.3843 REMARK 3 12 1.7335 - 1.6840 1.00 2596 137 0.3273 0.3683 REMARK 3 13 1.6840 - 1.6396 1.00 2563 134 0.3397 0.3581 REMARK 3 14 1.6396 - 1.5996 1.00 2599 137 0.3652 0.3614 REMARK 3 15 1.5996 - 1.5633 1.00 2583 136 0.3865 0.3967 REMARK 3 16 1.5633 - 1.5300 1.00 2573 136 0.4195 0.3997 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.260 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 28.350 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 19.73 REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.008 2169 REMARK 3 ANGLE : 1.179 2921 REMARK 3 CHIRALITY : 0.056 323 REMARK 3 PLANARITY : 0.007 375 REMARK 3 DIHEDRAL : 11.846 846 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 6 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID -16 THROUGH 4 ) REMARK 3 ORIGIN FOR THE GROUP (A): 48.1472 -20.7854 -29.5397 REMARK 3 T TENSOR REMARK 3 T11: 0.2232 T22: 0.1918 REMARK 3 T33: 0.2010 T12: 0.0770 REMARK 3 T13: 0.0503 T23: 0.0673 REMARK 3 L TENSOR REMARK 3 L11: 1.5277 L22: 7.6304 REMARK 3 L33: 6.3379 L12: -3.0003 REMARK 3 L13: -2.8252 L23: 4.2340 REMARK 3 S TENSOR REMARK 3 S11: -0.1371 S12: 0.2404 S13: -0.4321 REMARK 3 S21: 0.0033 S22: 0.4373 S23: -0.2110 REMARK 3 S31: -0.1869 S32: -0.1830 S33: -0.1364 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 5 THROUGH 117 ) REMARK 3 ORIGIN FOR THE GROUP (A): 45.2439 8.6205 -7.7626 REMARK 3 T TENSOR REMARK 3 T11: 0.1047 T22: 0.1662 REMARK 3 T33: 0.1821 T12: -0.0337 REMARK 3 T13: 0.0026 T23: -0.0073 REMARK 3 L TENSOR REMARK 3 L11: 1.8315 L22: 1.5809 REMARK 3 L33: 5.4010 L12: -0.8179 REMARK 3 L13: 1.5312 L23: -1.4434 REMARK 3 S TENSOR REMARK 3 S11: -0.0029 S12: 0.1523 S13: 0.0585 REMARK 3 S21: -0.1743 S22: -0.0821 S23: -0.0337 REMARK 3 S31: 0.1345 S32: 0.2214 S33: 0.0815 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'B' AND (RESID -12 THROUGH 6 ) REMARK 3 ORIGIN FOR THE GROUP (A): 23.2139 -38.4371 -11.4014 REMARK 3 T TENSOR REMARK 3 T11: 0.6610 T22: 0.5552 REMARK 3 T33: 0.3683 T12: 0.1700 REMARK 3 T13: 0.1033 T23: -0.0400 REMARK 3 L TENSOR REMARK 3 L11: 4.3793 L22: 3.3110 REMARK 3 L33: 0.2488 L12: 3.8220 REMARK 3 L13: 0.9313 L23: 0.8263 REMARK 3 S TENSOR REMARK 3 S11: -0.0005 S12: 0.4900 S13: -0.7195 REMARK 3 S21: 0.4789 S22: 0.2468 S23: -0.9373 REMARK 3 S31: 0.4695 S32: 0.5413 S33: -0.2304 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 7 THROUGH 26 ) REMARK 3 ORIGIN FOR THE GROUP (A): 23.9109 -13.0855 -22.2376 REMARK 3 T TENSOR REMARK 3 T11: 0.3425 T22: 0.1482 REMARK 3 T33: 0.2032 T12: -0.0663 REMARK 3 T13: 0.0723 T23: -0.0361 REMARK 3 L TENSOR REMARK 3 L11: 8.6336 L22: 7.6095 REMARK 3 L33: 5.3013 L12: -6.1088 REMARK 3 L13: 3.9401 L23: -3.8736 REMARK 3 S TENSOR REMARK 3 S11: -0.0674 S12: 0.2555 S13: -0.3810 REMARK 3 S21: -0.3896 S22: -0.1232 S23: 0.3263 REMARK 3 S31: 0.6154 S32: -0.1315 S33: 0.1380 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 27 THROUGH 102 ) REMARK 3 ORIGIN FOR THE GROUP (A): 20.1117 -2.2351 -6.9570 REMARK 3 T TENSOR REMARK 3 T11: 0.1119 T22: 0.1079 REMARK 3 T33: 0.1759 T12: -0.0067 REMARK 3 T13: -0.0147 T23: -0.0267 REMARK 3 L TENSOR REMARK 3 L11: 2.2862 L22: 3.2797 REMARK 3 L33: 5.8030 L12: 0.5925 REMARK 3 L13: -0.8358 L23: -1.1250 REMARK 3 S TENSOR REMARK 3 S11: 0.0126 S12: -0.2037 S13: 0.0527 REMARK 3 S21: 0.0896 S22: 0.0180 S23: -0.0347 REMARK 3 S31: -0.1084 S32: 0.1690 S33: -0.0242 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 103 THROUGH 118 ) REMARK 3 ORIGIN FOR THE GROUP (A): 27.2513 -5.5794 -9.1786 REMARK 3 T TENSOR REMARK 3 T11: 0.0776 T22: 0.1135 REMARK 3 T33: 0.1854 T12: -0.0114 REMARK 3 T13: 0.0034 T23: -0.0059 REMARK 3 L TENSOR REMARK 3 L11: 4.9015 L22: 7.4647 REMARK 3 L33: 3.7257 L12: -0.2969 REMARK 3 L13: -2.3354 L23: -0.4301 REMARK 3 S TENSOR REMARK 3 S11: -0.0845 S12: -0.2581 S13: 0.0423 REMARK 3 S21: -0.1067 S22: 0.0294 S23: -0.2844 REMARK 3 S31: -0.0912 S32: 0.6933 S33: 0.0657 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5MS5 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 03-JAN-17. REMARK 100 THE DEPOSITION ID IS D_1200002924. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 16-JUN-16 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 3.6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SLS REMARK 200 BEAMLINE : X10SA REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.99992 REMARK 200 MONOCHROMATOR : SI (111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 44250 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.530 REMARK 200 RESOLUTION RANGE LOW (A) : 49.222 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 25.40 REMARK 200 R MERGE (I) : 0.17690 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 14.6900 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.53 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.59 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 24.60 REMARK 200 R MERGE FOR SHELL (I) : 2.20500 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.420 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 2Z0E REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 44.69 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.22 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M CITRIC ACID ANHYDROUS AND 1.6 M REMARK 280 AMMONIUM SULFATE, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE REMARK 280 293.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 43 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+3/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+1/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+3/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+1/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 58.63000 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 34.80500 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 34.80500 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 87.94500 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 34.80500 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 34.80500 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 29.31500 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 34.80500 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 34.80500 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 87.94500 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 34.80500 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 34.80500 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 29.31500 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 58.63000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 359 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -17 REMARK 465 ASP A -2 REMARK 465 GLU A -1 REMARK 465 GLY A 0 REMARK 465 SER A 1 REMARK 465 PRO A 2 REMARK 465 SER A 3 REMARK 465 THR A 118 REMARK 465 PHE A 119 REMARK 465 GLY B -17 REMARK 465 HIS B -16 REMARK 465 MET B -15 REMARK 465 GLY B -14 REMARK 465 SER B -13 REMARK 465 ASP B -2 REMARK 465 GLU B -1 REMARK 465 GLY B 0 REMARK 465 SER B 1 REMARK 465 PRO B 2 REMARK 465 SER B 3 REMARK 465 PHE B 119 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O3 GOL A 203 O HOH A 301 1.96 REMARK 500 OE1 GLN A 26 O HOH A 302 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU B 117 66.75 60.83 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 203 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 B 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 B 202 DBREF 5MS5 A -13 -1 UNP Q5ZUV9 Q5ZUV9_LEGPH 24 36 DBREF 5MS5 A 2 119 UNP Q9GZQ8 MLP3B_HUMAN 2 119 DBREF 5MS5 B -13 -1 UNP Q5ZUV9 Q5ZUV9_LEGPH 24 36 DBREF 5MS5 B 2 119 UNP Q9GZQ8 MLP3B_HUMAN 2 119 SEQADV 5MS5 GLY A -17 UNP Q5ZUV9 EXPRESSION TAG SEQADV 5MS5 HIS A -16 UNP Q5ZUV9 EXPRESSION TAG SEQADV 5MS5 MET A -15 UNP Q5ZUV9 EXPRESSION TAG SEQADV 5MS5 GLY A -14 UNP Q5ZUV9 EXPRESSION TAG SEQADV 5MS5 GLY A 0 UNP Q5ZUV9 LINKER SEQADV 5MS5 SER A 1 UNP Q5ZUV9 LINKER SEQADV 5MS5 GLY B -17 UNP Q5ZUV9 EXPRESSION TAG SEQADV 5MS5 HIS B -16 UNP Q5ZUV9 EXPRESSION TAG SEQADV 5MS5 MET B -15 UNP Q5ZUV9 EXPRESSION TAG SEQADV 5MS5 GLY B -14 UNP Q5ZUV9 EXPRESSION TAG SEQADV 5MS5 GLY B 0 UNP Q5ZUV9 LINKER SEQADV 5MS5 SER B 1 UNP Q5ZUV9 LINKER SEQRES 1 A 137 GLY HIS MET GLY SER ASP ILE ASP GLU PHE ASP LEU LEU SEQRES 2 A 137 GLU GLY ASP GLU GLY SER PRO SER GLU LYS THR PHE LYS SEQRES 3 A 137 GLN ARG ARG THR PHE GLU GLN ARG VAL GLU ASP VAL ARG SEQRES 4 A 137 LEU ILE ARG GLU GLN HIS PRO THR LYS ILE PRO VAL ILE SEQRES 5 A 137 ILE GLU ARG TYR LYS GLY GLU LYS GLN LEU PRO VAL LEU SEQRES 6 A 137 ASP LYS THR LYS PHE LEU VAL PRO ASP HIS VAL ASN MET SEQRES 7 A 137 SER GLU LEU ILE LYS ILE ILE ARG ARG ARG LEU GLN LEU SEQRES 8 A 137 ASN ALA ASN GLN ALA PHE PHE LEU LEU VAL ASN GLY HIS SEQRES 9 A 137 SER MET VAL SER VAL SER THR PRO ILE SER GLU VAL TYR SEQRES 10 A 137 GLU SER GLU LYS ASP GLU ASP GLY PHE LEU TYR MET VAL SEQRES 11 A 137 TYR ALA SER GLN GLU THR PHE SEQRES 1 B 137 GLY HIS MET GLY SER ASP ILE ASP GLU PHE ASP LEU LEU SEQRES 2 B 137 GLU GLY ASP GLU GLY SER PRO SER GLU LYS THR PHE LYS SEQRES 3 B 137 GLN ARG ARG THR PHE GLU GLN ARG VAL GLU ASP VAL ARG SEQRES 4 B 137 LEU ILE ARG GLU GLN HIS PRO THR LYS ILE PRO VAL ILE SEQRES 5 B 137 ILE GLU ARG TYR LYS GLY GLU LYS GLN LEU PRO VAL LEU SEQRES 6 B 137 ASP LYS THR LYS PHE LEU VAL PRO ASP HIS VAL ASN MET SEQRES 7 B 137 SER GLU LEU ILE LYS ILE ILE ARG ARG ARG LEU GLN LEU SEQRES 8 B 137 ASN ALA ASN GLN ALA PHE PHE LEU LEU VAL ASN GLY HIS SEQRES 9 B 137 SER MET VAL SER VAL SER THR PRO ILE SER GLU VAL TYR SEQRES 10 B 137 GLU SER GLU LYS ASP GLU ASP GLY PHE LEU TYR MET VAL SEQRES 11 B 137 TYR ALA SER GLN GLU THR PHE HET SO4 A 201 5 HET SO4 A 202 5 HET GOL A 203 6 HET SO4 B 201 5 HET SO4 B 202 5 HETNAM SO4 SULFATE ION HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 3 SO4 4(O4 S 2-) FORMUL 5 GOL C3 H8 O3 FORMUL 8 HOH *198(H2 O) HELIX 1 AA1 THR A 6 ARG A 11 1 6 HELIX 2 AA2 THR A 12 HIS A 27 1 16 HELIX 3 AA3 ASN A 59 GLN A 72 1 14 HELIX 4 AA4 PRO A 94 LYS A 103 1 10 HELIX 5 AA5 ASP B -12 PHE B -8 5 5 HELIX 6 AA6 THR B 6 ARG B 11 1 6 HELIX 7 AA7 THR B 12 HIS B 27 1 16 HELIX 8 AA8 ASN B 59 LEU B 71 1 13 HELIX 9 AA9 PRO B 94 LYS B 103 1 10 SHEET 1 AA1 4 LYS A 51 PRO A 55 0 SHEET 2 AA1 4 LYS A 30 ARG A 37 -1 N VAL A 33 O PHE A 52 SHEET 3 AA1 4 LEU A 109 ALA A 114 1 O MET A 111 N ILE A 34 SHEET 4 AA1 4 PHE A 80 VAL A 83 -1 N LEU A 82 O VAL A 112 SHEET 1 AA2 4 LYS B 51 PRO B 55 0 SHEET 2 AA2 4 LYS B 30 ARG B 37 -1 N VAL B 33 O PHE B 52 SHEET 3 AA2 4 LEU B 109 ALA B 114 1 O MET B 111 N ILE B 34 SHEET 4 AA2 4 PHE B 80 VAL B 83 -1 N LEU B 82 O VAL B 112 SITE 1 AC1 4 HIS A 27 PRO A 28 THR A 29 LYS A 30 SITE 1 AC2 7 ARG A 10 ARG A 11 LYS A 51 GOL A 203 SITE 2 AC2 7 HOH A 306 HOH A 322 GLN B 72 SITE 1 AC3 8 GLU A -9 ARG A 10 ASP A 48 THR A 50 SITE 2 AC3 8 LYS A 51 SO4 A 202 HOH A 301 GLN B 72 SITE 1 AC4 8 MET A 88 VAL A 89 SER A 90 HOH A 305 SITE 2 AC4 8 MET B 88 VAL B 89 SER B 90 HOH B 302 SITE 1 AC5 4 HIS B 27 PRO B 28 THR B 29 LYS B 30 CRYST1 69.610 69.610 117.260 90.00 90.00 90.00 P 43 21 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014366 0.000000 0.000000 0.00000 SCALE2 0.000000 0.014366 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008528 0.00000