HEADER HYDROLASE 31-DEC-16 5MS7 TITLE CRYSTAL STRUCTURE OF THE LEGIONELLA PNEUMOPHILA EFFECTOR PROTEIN TITLE 2 RAVZ_20-502 COMPND MOL_ID: 1; COMPND 2 MOLECULE: LEGIONELLA PNEUMOPHILA EFFECTOR PROTEIN RAVZ; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: LEGIONELLA PNEUMOPHILA SUBSP. PNEUMOPHILA ATCC SOURCE 3 33215; SOURCE 4 ORGANISM_TAXID: 933085; SOURCE 5 GENE: LPG1683; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: POPIN KEYWDS HYDROLASE / AUTOPHAGY / LEGIONELLA PNEUMOPHILA EFFECTOR PROTEIN / KEYWDS 2 ATG8 DECONJUGATING ENZYME, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR S.PANTOOM,I.R.VETTER,Y.W.WU REVDAT 3 17-JAN-24 5MS7 1 REMARK REVDAT 2 26-APR-17 5MS7 1 JRNL REVDAT 1 19-APR-17 5MS7 0 JRNL AUTH A.YANG,S.PANTOOM,Y.W.WU JRNL TITL ELUCIDATION OF THE ANTI-AUTOPHAGY MECHANISM OF THE JRNL TITL 2 LEGIONELLA EFFECTOR RAVZ USING SEMISYNTHETIC LC3 PROTEINS. JRNL REF ELIFE V. 6 2017 JRNL REFN ESSN 2050-084X JRNL PMID 28395732 JRNL DOI 10.7554/ELIFE.23905 REMARK 2 REMARK 2 RESOLUTION. 2.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.9_1692 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 47.15 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.370 REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 22914 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.209 REMARK 3 R VALUE (WORKING SET) : 0.207 REMARK 3 FREE R VALUE : 0.254 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1146 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 47.1514 - 5.5973 1.00 2870 152 0.2065 0.2800 REMARK 3 2 5.5973 - 4.4438 1.00 2758 145 0.1766 0.1989 REMARK 3 3 4.4438 - 3.8824 1.00 2723 143 0.1571 0.1787 REMARK 3 4 3.8824 - 3.5276 1.00 2707 143 0.1748 0.2246 REMARK 3 5 3.5276 - 3.2748 1.00 2684 141 0.2401 0.2905 REMARK 3 6 3.2748 - 3.0818 1.00 2694 142 0.2822 0.3399 REMARK 3 7 3.0818 - 2.9274 1.00 2657 140 0.3404 0.3965 REMARK 3 8 2.9274 - 2.8000 1.00 2675 140 0.3709 0.3862 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.480 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 30.740 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 86.30 REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.009 2976 REMARK 3 ANGLE : 1.379 4014 REMARK 3 CHIRALITY : 0.052 456 REMARK 3 PLANARITY : 0.006 506 REMARK 3 DIHEDRAL : 17.037 1103 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 3 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 48 THROUGH 98 ) REMARK 3 ORIGIN FOR THE GROUP (A): 277.6274 195.6998 9.3878 REMARK 3 T TENSOR REMARK 3 T11: 0.8614 T22: 0.4250 REMARK 3 T33: 1.1955 T12: 0.0259 REMARK 3 T13: 0.0341 T23: 0.0146 REMARK 3 L TENSOR REMARK 3 L11: 4.4951 L22: 8.5024 REMARK 3 L33: 9.0015 L12: -1.6525 REMARK 3 L13: 1.1409 L23: 0.2386 REMARK 3 S TENSOR REMARK 3 S11: -0.3255 S12: -0.2634 S13: 0.9135 REMARK 3 S21: -0.1984 S22: 0.3638 S23: 0.2446 REMARK 3 S31: -1.0762 S32: -0.3727 S33: -0.0011 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 99 THROUGH 256 ) REMARK 3 ORIGIN FOR THE GROUP (A): 284.8119 182.6046 -4.5083 REMARK 3 T TENSOR REMARK 3 T11: 0.7020 T22: 0.4292 REMARK 3 T33: 0.6217 T12: -0.1349 REMARK 3 T13: -0.0414 T23: 0.0215 REMARK 3 L TENSOR REMARK 3 L11: 6.4340 L22: 6.0979 REMARK 3 L33: 5.9837 L12: -1.1194 REMARK 3 L13: -1.0158 L23: -0.2665 REMARK 3 S TENSOR REMARK 3 S11: -0.2378 S12: 0.3662 S13: 0.0495 REMARK 3 S21: -0.4543 S22: 0.1098 S23: -0.3098 REMARK 3 S31: -0.5089 S32: 0.2913 S33: 0.0877 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 257 THROUGH 432 ) REMARK 3 ORIGIN FOR THE GROUP (A): 281.4890 204.9122 22.1834 REMARK 3 T TENSOR REMARK 3 T11: 1.2527 T22: 0.4931 REMARK 3 T33: 1.2665 T12: -0.1938 REMARK 3 T13: -0.0303 T23: -0.0664 REMARK 3 L TENSOR REMARK 3 L11: 1.2120 L22: 3.9569 REMARK 3 L33: 7.5873 L12: -0.4078 REMARK 3 L13: -0.4527 L23: 3.7977 REMARK 3 S TENSOR REMARK 3 S11: 0.1595 S12: 0.0057 S13: 0.5258 REMARK 3 S21: -0.2825 S22: 0.0790 S23: 0.1049 REMARK 3 S31: -1.8603 S32: 0.3571 S33: -0.3217 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5MS7 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 03-JAN-17. REMARK 100 THE DEPOSITION ID IS D_1200002921. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 26-FEB-16 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SLS REMARK 200 BEAMLINE : X10SA REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97862 REMARK 200 MONOCHROMATOR : SI (111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : PSI PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 22921 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.800 REMARK 200 RESOLUTION RANGE LOW (A) : 47.150 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 26.70 REMARK 200 R MERGE (I) : 0.19380 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 15.1400 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.90 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 26.30 REMARK 200 R MERGE FOR SHELL (I) : 1.95100 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.940 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 5CQC REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 70.49 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 4.17 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 16% PEG3350, 0.2 M BACL2 AND 0.1 M REMARK 280 MES, PH 5.6, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 277.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 4 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -Y,X,Z REMARK 290 4555 Y,-X,Z REMARK 290 5555 -X,Y,-Z REMARK 290 6555 X,-Y,-Z REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z REMARK 290 9555 X+1/2,Y+1/2,Z+1/2 REMARK 290 10555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 11555 -Y+1/2,X+1/2,Z+1/2 REMARK 290 12555 Y+1/2,-X+1/2,Z+1/2 REMARK 290 13555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 14555 X+1/2,-Y+1/2,-Z+1/2 REMARK 290 15555 Y+1/2,X+1/2,-Z+1/2 REMARK 290 16555 -Y+1/2,-X+1/2,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 1.000000 0.000000 0.000000 111.38500 REMARK 290 SMTRY2 9 0.000000 1.000000 0.000000 111.38500 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 36.47000 REMARK 290 SMTRY1 10 -1.000000 0.000000 0.000000 111.38500 REMARK 290 SMTRY2 10 0.000000 -1.000000 0.000000 111.38500 REMARK 290 SMTRY3 10 0.000000 0.000000 1.000000 36.47000 REMARK 290 SMTRY1 11 0.000000 -1.000000 0.000000 111.38500 REMARK 290 SMTRY2 11 1.000000 0.000000 0.000000 111.38500 REMARK 290 SMTRY3 11 0.000000 0.000000 1.000000 36.47000 REMARK 290 SMTRY1 12 0.000000 1.000000 0.000000 111.38500 REMARK 290 SMTRY2 12 -1.000000 0.000000 0.000000 111.38500 REMARK 290 SMTRY3 12 0.000000 0.000000 1.000000 36.47000 REMARK 290 SMTRY1 13 -1.000000 0.000000 0.000000 111.38500 REMARK 290 SMTRY2 13 0.000000 1.000000 0.000000 111.38500 REMARK 290 SMTRY3 13 0.000000 0.000000 -1.000000 36.47000 REMARK 290 SMTRY1 14 1.000000 0.000000 0.000000 111.38500 REMARK 290 SMTRY2 14 0.000000 -1.000000 0.000000 111.38500 REMARK 290 SMTRY3 14 0.000000 0.000000 -1.000000 36.47000 REMARK 290 SMTRY1 15 0.000000 1.000000 0.000000 111.38500 REMARK 290 SMTRY2 15 1.000000 0.000000 0.000000 111.38500 REMARK 290 SMTRY3 15 0.000000 0.000000 -1.000000 36.47000 REMARK 290 SMTRY1 16 0.000000 -1.000000 0.000000 111.38500 REMARK 290 SMTRY2 16 -1.000000 0.000000 0.000000 111.38500 REMARK 290 SMTRY3 16 0.000000 0.000000 -1.000000 36.47000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4290 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 33640 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -29.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.000000 1.000000 0.000000 111.38500 REMARK 350 BIOMT2 2 1.000000 0.000000 0.000000 -111.38500 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 36.47000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 714 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 18 REMARK 465 PRO A 19 REMARK 465 GLY A 20 REMARK 465 GLU A 21 REMARK 465 GLN A 22 REMARK 465 GLU A 23 REMARK 465 SER A 24 REMARK 465 ASP A 25 REMARK 465 ILE A 26 REMARK 465 ASP A 27 REMARK 465 GLU A 28 REMARK 465 PHE A 29 REMARK 465 ASP A 30 REMARK 465 LEU A 31 REMARK 465 LEU A 32 REMARK 465 GLU A 33 REMARK 465 GLY A 34 REMARK 465 ASP A 35 REMARK 465 GLU A 36 REMARK 465 LYS A 37 REMARK 465 LEU A 38 REMARK 465 PRO A 39 REMARK 465 GLY A 40 REMARK 465 ASP A 41 REMARK 465 SER A 42 REMARK 465 GLU A 43 REMARK 465 LEU A 44 REMARK 465 ASP A 45 REMARK 465 LYS A 46 REMARK 465 THR A 47 REMARK 465 HIS A 249 REMARK 465 GLN A 250 REMARK 465 ASN A 251 REMARK 465 ARG A 252 REMARK 465 LEU A 253 REMARK 465 THR A 254 REMARK 465 GLU A 255 REMARK 465 GLU A 348 REMARK 465 LYS A 349 REMARK 465 SER A 350 REMARK 465 MET A 351 REMARK 465 LEU A 352 REMARK 465 ASN A 353 REMARK 465 PHE A 354 REMARK 465 ILE A 355 REMARK 465 ASP A 433 REMARK 465 ASP A 434 REMARK 465 PHE A 435 REMARK 465 VAL A 436 REMARK 465 THR A 437 REMARK 465 ILE A 438 REMARK 465 GLU A 439 REMARK 465 LYS A 440 REMARK 465 ASP A 441 REMARK 465 GLU A 442 REMARK 465 LEU A 443 REMARK 465 PHE A 444 REMARK 465 ASP A 445 REMARK 465 VAL A 446 REMARK 465 PRO A 447 REMARK 465 ASP A 448 REMARK 465 ILE A 449 REMARK 465 THR A 450 REMARK 465 GLY A 451 REMARK 465 GLU A 452 REMARK 465 GLU A 453 REMARK 465 LEU A 454 REMARK 465 ALA A 455 REMARK 465 SER A 456 REMARK 465 LYS A 457 REMARK 465 LYS A 458 REMARK 465 GLY A 459 REMARK 465 ILE A 460 REMARK 465 GLU A 461 REMARK 465 GLN A 462 REMARK 465 GLY A 463 REMARK 465 ALA A 464 REMARK 465 LEU A 465 REMARK 465 ASP A 466 REMARK 465 LYS A 467 REMARK 465 GLU A 468 REMARK 465 ALA A 469 REMARK 465 LEU A 470 REMARK 465 LEU A 471 REMARK 465 LYS A 472 REMARK 465 GLN A 473 REMARK 465 LYS A 474 REMARK 465 GLN A 475 REMARK 465 ILE A 476 REMARK 465 LYS A 477 REMARK 465 THR A 478 REMARK 465 ASP A 479 REMARK 465 LEU A 480 REMARK 465 LEU A 481 REMARK 465 ASP A 482 REMARK 465 LEU A 483 REMARK 465 ARG A 484 REMARK 465 GLU A 485 REMARK 465 GLU A 486 REMARK 465 ASP A 487 REMARK 465 LYS A 488 REMARK 465 THR A 489 REMARK 465 GLY A 490 REMARK 465 LEU A 491 REMARK 465 LYS A 492 REMARK 465 LYS A 493 REMARK 465 PRO A 494 REMARK 465 LEU A 495 REMARK 465 HIS A 496 REMARK 465 GLY A 497 REMARK 465 GLY A 498 REMARK 465 ILE A 499 REMARK 465 LYS A 500 REMARK 465 VAL A 501 REMARK 465 LYS A 502 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O LEU A 91 CB ASP A 93 1.88 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 PRO A 186 C - N - CA ANGL. DEV. = 9.4 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 93 -132.49 52.27 REMARK 500 GLN A 275 156.66 178.64 REMARK 500 THR A 277 73.51 41.63 REMARK 500 GLN A 345 -66.89 -102.74 REMARK 500 SER A 400 -134.99 51.47 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 VAL A 90 LEU A 91 112.27 REMARK 500 LEU A 91 GLU A 92 -148.58 REMARK 500 SER A 198 ILE A 199 -145.07 REMARK 500 ILE A 232 LYS A 233 144.21 REMARK 500 LYS A 233 SER A 234 145.03 REMARK 500 ALA A 274 GLN A 275 149.41 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 BA A 601 BA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 VAL A 135 O REMARK 620 2 ASP A 137 OD1 105.1 REMARK 620 3 ASP A 140 OD2 89.4 91.4 REMARK 620 4 GOL A 603 O2 64.7 75.5 145.7 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue BA A 601 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 603 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 604 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 605 DBREF 5MS7 A 20 502 UNP Q5ZUV9 Q5ZUV9_LEGPH 20 502 SEQADV 5MS7 GLY A 18 UNP Q5ZUV9 EXPRESSION TAG SEQADV 5MS7 PRO A 19 UNP Q5ZUV9 EXPRESSION TAG SEQRES 1 A 485 GLY PRO GLY GLU GLN GLU SER ASP ILE ASP GLU PHE ASP SEQRES 2 A 485 LEU LEU GLU GLY ASP GLU LYS LEU PRO GLY ASP SER GLU SEQRES 3 A 485 LEU ASP LYS THR THR SER ILE TYR PRO PRO GLU THR SER SEQRES 4 A 485 TRP GLU VAL ASN LYS GLY MET ASN SER SER ARG LEU HIS SEQRES 5 A 485 LYS LEU TYR SER LEU PHE PHE ASP LYS SER SER ALA PHE SEQRES 6 A 485 TYR LEU GLY ASP ASP VAL SER VAL LEU GLU ASP LYS PRO SEQRES 7 A 485 LEU THR GLY ALA TYR GLY PHE GLN SER LYS LYS ASN ASP SEQRES 8 A 485 GLN GLN ILE PHE LEU PHE ARG PRO ASP SER ASP TYR VAL SEQRES 9 A 485 ALA GLY TYR HIS VAL ASP ALA LYS SER ASP ALA GLY TRP SEQRES 10 A 485 VAL ASN ASP LYS LEU ASP ARG ARG LEU SER GLU ILE SER SEQRES 11 A 485 GLU PHE CYS SER LYS ALA THR GLN PRO ALA THR PHE ILE SEQRES 12 A 485 LEU PRO PHE VAL GLU MET PRO THR ASP ILE THR LYS GLY SEQRES 13 A 485 VAL GLN HIS GLN VAL LEU LEU THR ILE SER TYR ASP PRO SEQRES 14 A 485 LYS SER LYS GLN LEU THR PRO THR VAL TYR ASP SER ILE SEQRES 15 A 485 GLY ARG ASP THR TYR SER GLU SER LEU SER SER TYR PHE SEQRES 16 A 485 LYS GLY LYS TYR ARG THR THR CYS ASP GLU ILE LEU THR SEQRES 17 A 485 GLN SER ILE GLU LYS ALA ILE LYS SER THR ASP PHE THR SEQRES 18 A 485 LEU GLY LYS PHE THR ARG ALA ALA TYR ASN HIS GLN ASN SEQRES 19 A 485 ARG LEU THR GLU GLY ASN CYS GLY SER TYR THR PHE ARG SEQRES 20 A 485 THR ILE LYS GLU VAL ILE SER SER SER ALA GLN GLY THR SEQRES 21 A 485 GLU VAL LYS ILE PRO GLY SER GLY TYR ILE THR SER ASN SEQRES 22 A 485 SER TYR LEU THR SER GLN HIS VAL GLN ASP ILE GLU SER SEQRES 23 A 485 CYS ILE LYS TYR ARG ASN LEU GLY VAL VAL ASP ILE GLU SEQRES 24 A 485 SER ALA LEU THR GLU GLY LYS THR LEU PRO VAL GLN LEU SEQRES 25 A 485 SER GLU PHE ILE VAL ALA LEU GLU ASP TYR GLY LYS LEU SEQRES 26 A 485 ARG SER GLN GLN SER GLU LYS SER MET LEU ASN PHE ILE SEQRES 27 A 485 GLY TYR SER LYS THR ALA LYS LEU THR ALA VAL GLU LEU SEQRES 28 A 485 LEU ILE GLY ILE LEU ASN ASP ILE LYS GLY LYS ASN GLU SEQRES 29 A 485 ILE SER GLU SER GLN TYR ASP LYS LEU VAL LYS GLU VAL SEQRES 30 A 485 ASP CYS LEU MET ASP SER SER LEU GLY LYS LEU VAL GLN SEQRES 31 A 485 PHE HIS LEU LYS ASN LEU GLY ALA GLU SER LEU GLN LYS SEQRES 32 A 485 LEU VAL LEU PRO CYS VAL LYS PHE ASP ASP THR ILE ASP SEQRES 33 A 485 ASP PHE VAL THR ILE GLU LYS ASP GLU LEU PHE ASP VAL SEQRES 34 A 485 PRO ASP ILE THR GLY GLU GLU LEU ALA SER LYS LYS GLY SEQRES 35 A 485 ILE GLU GLN GLY ALA LEU ASP LYS GLU ALA LEU LEU LYS SEQRES 36 A 485 GLN LYS GLN ILE LYS THR ASP LEU LEU ASP LEU ARG GLU SEQRES 37 A 485 GLU ASP LYS THR GLY LEU LYS LYS PRO LEU HIS GLY GLY SEQRES 38 A 485 ILE LYS VAL LYS HET BA A 601 1 HET BA A 602 1 HET GOL A 603 6 HET GOL A 604 6 HET GOL A 605 6 HETNAM BA BARIUM ION HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 2 BA 2(BA 2+) FORMUL 4 GOL 3(C3 H8 O3) FORMUL 7 HOH *14(H2 O) HELIX 1 AA1 GLU A 58 GLY A 62 5 5 HELIX 2 AA2 ASN A 64 TYR A 72 1 9 HELIX 3 AA3 SER A 73 PHE A 76 5 4 HELIX 4 AA4 ASN A 136 LYS A 152 1 17 HELIX 5 AA5 CYS A 220 ILE A 232 1 13 HELIX 6 AA6 ASN A 257 SER A 273 1 17 HELIX 7 AA7 THR A 288 LEU A 293 1 6 HELIX 8 AA8 THR A 294 ARG A 308 1 15 HELIX 9 AA9 VAL A 312 GLU A 321 1 10 HELIX 10 AB1 GLN A 328 SER A 344 1 17 HELIX 11 AB2 SER A 358 GLY A 378 1 21 HELIX 12 AB3 GLU A 384 ASP A 399 1 16 HELIX 13 AB4 ASP A 399 GLY A 414 1 16 HELIX 14 AB5 SER A 417 LEU A 423 1 7 SHEET 1 AA1 2 ILE A 50 TYR A 51 0 SHEET 2 AA1 2 LEU A 310 GLY A 311 -1 O LEU A 310 N TYR A 51 SHEET 1 AA2 7 ASP A 87 SER A 89 0 SHEET 2 AA2 7 ALA A 99 SER A 104 -1 O GLN A 103 N VAL A 88 SHEET 3 AA2 7 GLN A 110 PHE A 114 -1 O LEU A 113 N TYR A 100 SHEET 4 AA2 7 ALA A 157 PRO A 167 1 O THR A 158 N PHE A 112 SHEET 5 AA2 7 HIS A 176 ASP A 185 -1 O LEU A 180 N LEU A 161 SHEET 6 AA2 7 GLN A 190 ASP A 197 -1 O THR A 194 N THR A 181 SHEET 7 AA2 7 THR A 238 LEU A 239 1 O THR A 238 N LEU A 191 SHEET 1 AA3 6 GLY A 133 VAL A 135 0 SHEET 2 AA3 6 VAL A 121 TYR A 124 -1 N GLY A 123 O TRP A 134 SHEET 3 AA3 6 ALA A 157 PRO A 167 1 O MET A 166 N ALA A 122 SHEET 4 AA3 6 HIS A 176 ASP A 185 -1 O LEU A 180 N LEU A 161 SHEET 5 AA3 6 GLN A 190 ASP A 197 -1 O THR A 194 N THR A 181 SHEET 6 AA3 6 THR A 243 ALA A 246 1 O ALA A 245 N ASP A 197 SHEET 1 AA4 2 ILE A 382 SER A 383 0 SHEET 2 AA4 2 VAL A 426 LYS A 427 1 O LYS A 427 N ILE A 382 LINK O VAL A 135 BA BA A 601 1555 1555 2.95 LINK OD1 ASP A 137 BA BA A 601 1555 1555 3.39 LINK OD2 ASP A 140 BA BA A 601 1555 1555 3.38 LINK BA BA A 601 O2 GOL A 603 1555 1555 2.64 SITE 1 AC1 4 VAL A 135 ASP A 137 ASP A 140 GOL A 603 SITE 1 AC2 3 VAL A 135 ASP A 137 BA A 601 SITE 1 AC3 2 CYS A 425 VAL A 426 SITE 1 AC4 1 SER A 56 CRYST1 222.770 222.770 72.940 90.00 90.00 90.00 I 4 2 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.004489 0.000000 0.000000 0.00000 SCALE2 0.000000 0.004489 0.000000 0.00000 SCALE3 0.000000 0.000000 0.013710 0.00000