HEADER CELL CYCLE 05-JAN-17 5MSM TITLE STRUCTURE OF THE DCC1-CTF8-CTF18C TRIMER COMPND MOL_ID: 1; COMPND 2 MOLECULE: SISTER CHROMATID COHESION PROTEIN DCC1; COMPND 3 CHAIN: A, D; COMPND 4 SYNONYM: DEFECTIVE IN SISTER CHROMATID COHESION PROTEIN 1; COMPND 5 ENGINEERED: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: CHROMOSOME TRANSMISSION FIDELITY PROTEIN 8; COMPND 8 CHAIN: B, E; COMPND 9 ENGINEERED: YES; COMPND 10 MOL_ID: 3; COMPND 11 MOLECULE: CHROMOSOME TRANSMISSION FIDELITY PROTEIN 18; COMPND 12 CHAIN: C, F; COMPND 13 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE S288C; SOURCE 3 ORGANISM_TAXID: 559292; SOURCE 4 GENE: DCC1, YCL016C, YCL16C; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 MOL_ID: 2; SOURCE 8 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE S288C; SOURCE 9 ORGANISM_TAXID: 559292; SOURCE 10 GENE: CTF8, YHR191C; SOURCE 11 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 12 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 13 MOL_ID: 3; SOURCE 14 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE S288C; SOURCE 15 ORGANISM_TAXID: 559292; SOURCE 16 GENE: CTF18, CHL12, YMR078C, YM9582.03C; SOURCE 17 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 18 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS WINGED-HELIX, DNA REPAIR, CELL CYCLE EXPDTA X-RAY DIFFRACTION AUTHOR B.O.WADE,M.R.SINGLETON REVDAT 5 17-JAN-24 5MSM 1 REMARK REVDAT 4 30-AUG-17 5MSM 1 REMARK REVDAT 3 12-APR-17 5MSM 1 JRNL REVDAT 2 22-FEB-17 5MSM 1 JRNL REVDAT 1 15-FEB-17 5MSM 0 JRNL AUTH B.O.WADE,H.W.LIU,C.P.SAMORA,F.UHLMANN,M.R.SINGLETON JRNL TITL STRUCTURAL STUDIES OF RFC(C)(TF18) REVEAL A NOVEL CHROMATIN JRNL TITL 2 RECRUITMENT ROLE FOR DCC1. JRNL REF EMBO REP. V. 18 558 2017 JRNL REFN ESSN 1469-3178 JRNL PMID 28188145 JRNL DOI 10.15252/EMBR.201642825 REMARK 2 REMARK 2 RESOLUTION. 2.29 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.9_1692 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.29 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 60.64 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 89.9 REMARK 3 NUMBER OF REFLECTIONS : 46207 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.203 REMARK 3 R VALUE (WORKING SET) : 0.200 REMARK 3 FREE R VALUE : 0.260 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.870 REMARK 3 FREE R VALUE TEST SET COUNT : 2252 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 82.1628 - 5.7702 0.96 2999 138 0.1748 0.2104 REMARK 3 2 5.7702 - 4.5801 0.94 2888 161 0.1694 0.2283 REMARK 3 3 4.5801 - 4.0011 0.95 2888 162 0.1563 0.2304 REMARK 3 4 4.0011 - 3.6353 0.97 2966 151 0.1768 0.2434 REMARK 3 5 3.6353 - 3.3747 0.98 2966 199 0.1986 0.2429 REMARK 3 6 3.3747 - 3.1758 0.99 3046 137 0.2061 0.2410 REMARK 3 7 3.1758 - 3.0167 1.00 3069 112 0.2215 0.2917 REMARK 3 8 3.0167 - 2.8854 1.00 3028 182 0.2295 0.2890 REMARK 3 9 2.8854 - 2.7743 1.00 3058 149 0.2346 0.3252 REMARK 3 10 2.7743 - 2.6786 1.00 3047 153 0.2501 0.3673 REMARK 3 11 2.6786 - 2.5948 0.99 3075 131 0.2573 0.3164 REMARK 3 12 2.5948 - 2.5206 0.91 2758 143 0.2734 0.3329 REMARK 3 13 2.5206 - 2.4543 0.80 2449 107 0.2790 0.3119 REMARK 3 14 2.4543 - 2.3944 0.71 2174 118 0.2896 0.4074 REMARK 3 15 2.3944 - 2.3400 0.61 1857 88 0.2795 0.4319 REMARK 3 16 2.3400 - 2.2902 0.56 1687 121 0.3123 0.3475 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.330 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 32.120 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.010 8700 REMARK 3 ANGLE : 1.531 11738 REMARK 3 CHIRALITY : 0.062 1308 REMARK 3 PLANARITY : 0.007 1484 REMARK 3 DIHEDRAL : 15.628 3302 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5MSM COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 05-JAN-17. REMARK 100 THE DEPOSITION ID IS D_1200002953. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 26-JUL-15 REMARK 200 TEMPERATURE (KELVIN) : 93 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I03 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9763 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XIA2 REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 46232 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.290 REMARK 200 RESOLUTION RANGE LOW (A) : 60.640 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 90.0 REMARK 200 DATA REDUNDANCY : 3.000 REMARK 200 R MERGE (I) : 0.08522 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 7.1500 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.29 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.37 REMARK 200 COMPLETENESS FOR SHELL (%) : 57.0 REMARK 200 DATA REDUNDANCY IN SHELL : 1.90 REMARK 200 R MERGE FOR SHELL (I) : 0.45570 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.310 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 5MSN REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 42.47 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.14 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M BIS-TRIS PROPANE PH 6.3, 0.2M REMARK 280 NABR AND 17% PEG 3,350, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 82.11000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 9240 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 27650 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -49.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 8760 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 27930 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -47.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: D, E, F REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 VAL A 32 REMARK 465 GLN A 33 REMARK 465 ASN A 34 REMARK 465 GLN A 243 REMARK 465 GLU A 244 REMARK 465 ALA A 245 REMARK 465 GLU A 246 REMARK 465 ASN A 247 REMARK 465 MET B 1 REMARK 465 SER C 664 REMARK 465 GLY C 665 REMARK 465 LYS C 666 REMARK 465 VAL C 667 REMARK 465 LYS C 668 REMARK 465 THR C 669 REMARK 465 GLY C 670 REMARK 465 LEU C 671 REMARK 465 ASN C 672 REMARK 465 SER C 673 REMARK 465 SER C 674 REMARK 465 SER C 675 REMARK 465 SER C 676 REMARK 465 THR C 677 REMARK 465 ILE C 678 REMARK 465 ASP C 679 REMARK 465 PHE C 680 REMARK 465 PHE C 681 REMARK 465 LYS C 682 REMARK 465 ASN C 683 REMARK 465 GLN C 684 REMARK 465 TYR C 685 REMARK 465 GLY C 686 REMARK 465 LEU C 687 REMARK 465 LEU C 688 REMARK 465 LYS C 689 REMARK 465 GLN C 690 REMARK 465 THR C 691 REMARK 465 GLN C 692 REMARK 465 GLU C 693 REMARK 465 LEU C 694 REMARK 465 GLU C 695 REMARK 465 GLU C 696 REMARK 465 THR C 697 REMARK 465 GLN C 698 REMARK 465 LYS C 699 REMARK 465 THR C 700 REMARK 465 ILE C 701 REMARK 465 GLY C 702 REMARK 465 SER C 703 REMARK 465 ASP C 704 REMARK 465 GLU C 705 REMARK 465 THR C 706 REMARK 465 ASN C 707 REMARK 465 GLN C 708 REMARK 465 ALA C 709 REMARK 465 ASP C 710 REMARK 465 ASP C 711 REMARK 465 CYS C 712 REMARK 465 ASN C 713 REMARK 465 GLU C 741 REMARK 465 MET D 1 REMARK 465 VAL D 32 REMARK 465 GLN D 33 REMARK 465 ASN D 34 REMARK 465 GLU D 244 REMARK 465 ALA D 245 REMARK 465 GLU D 246 REMARK 465 ASN D 247 REMARK 465 LEU D 351 REMARK 465 ASN D 352 REMARK 465 MET E 1 REMARK 465 GLN E 16 REMARK 465 SER E 17 REMARK 465 ARG E 18 REMARK 465 GLU E 19 REMARK 465 LYS E 20 REMARK 465 GLN E 21 REMARK 465 THR E 22 REMARK 465 MET E 133 REMARK 465 SER F 664 REMARK 465 GLY F 665 REMARK 465 LYS F 666 REMARK 465 VAL F 667 REMARK 465 LYS F 668 REMARK 465 THR F 669 REMARK 465 GLY F 670 REMARK 465 LEU F 671 REMARK 465 ASN F 672 REMARK 465 SER F 673 REMARK 465 SER F 674 REMARK 465 SER F 675 REMARK 465 SER F 676 REMARK 465 THR F 677 REMARK 465 ILE F 678 REMARK 465 ASP F 679 REMARK 465 PHE F 680 REMARK 465 PHE F 681 REMARK 465 LYS F 682 REMARK 465 ASN F 683 REMARK 465 GLN F 684 REMARK 465 TYR F 685 REMARK 465 GLY F 686 REMARK 465 LEU F 687 REMARK 465 LEU F 688 REMARK 465 LYS F 689 REMARK 465 GLN F 690 REMARK 465 THR F 691 REMARK 465 GLN F 692 REMARK 465 GLU F 693 REMARK 465 LEU F 694 REMARK 465 GLU F 695 REMARK 465 GLU F 696 REMARK 465 THR F 697 REMARK 465 GLN F 698 REMARK 465 LYS F 699 REMARK 465 THR F 700 REMARK 465 ILE F 701 REMARK 465 GLY F 702 REMARK 465 SER F 703 REMARK 465 ASP F 704 REMARK 465 GLU F 705 REMARK 465 THR F 706 REMARK 465 ASN F 707 REMARK 465 GLN F 708 REMARK 465 ALA F 709 REMARK 465 ASP F 710 REMARK 465 ASP F 711 REMARK 465 CYS F 712 REMARK 465 ASN F 713 REMARK 465 GLN F 714 REMARK 465 THR F 715 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 134 CG CD CE NZ REMARK 470 ARG A 302 CG CD NE CZ NH1 NH2 REMARK 470 THR B 22 OG1 CG2 REMARK 470 LYS B 43 CG CD CE NZ REMARK 470 ARG B 79 CG CD NE CZ NH1 NH2 REMARK 470 LYS D 93 CG CD CE NZ REMARK 470 LYS D 134 CG CD CE NZ REMARK 470 LYS E 93 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH B 226 O HOH B 237 1.81 REMARK 500 O HOH B 231 O HOH B 238 1.94 REMARK 500 OD2 ASP D 340 O HOH D 401 1.94 REMARK 500 NH2 ARG D 380 O HOH D 402 1.96 REMARK 500 OG SER D 139 O HOH D 403 2.01 REMARK 500 O GLN D 204 O HOH D 404 2.01 REMARK 500 O LYS A 326 O HOH A 401 2.03 REMARK 500 O HOH A 476 O HOH B 233 2.03 REMARK 500 OE2 GLU D 107 O HOH D 405 2.03 REMARK 500 OE1 GLU E 65 O HOH E 201 2.05 REMARK 500 O HOH A 450 O HOH B 230 2.05 REMARK 500 OG1 THR A 21 O HOH A 402 2.05 REMARK 500 O THR D 104 O HOH D 406 2.05 REMARK 500 O SER D 271 O HOH D 407 2.06 REMARK 500 O SER D 106 O HOH D 408 2.06 REMARK 500 O VAL B 24 O HOH B 201 2.08 REMARK 500 NE2 GLN B 21 O HOH B 202 2.10 REMARK 500 O HOH B 217 O HOH B 233 2.12 REMARK 500 OE2 GLU A 232 O HOH A 403 2.13 REMARK 500 O HOH D 423 O HOH D 476 2.13 REMARK 500 N LEU A 24 O HOH A 402 2.17 REMARK 500 NE2 GLN A 241 O HOH A 404 2.17 REMARK 500 NE2 GLN A 36 O HOH A 405 2.18 REMARK 500 OE1 GLU A 232 O HOH A 406 2.18 REMARK 500 O ARG D 138 O HOH D 409 2.18 REMARK 500 O SER A 271 O HOH A 407 2.19 REMARK 500 O TRP C 740 O HOH C 801 2.19 REMARK 500 NZ LYS A 46 O HOH A 408 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 LEU D 88 C - N - CA ANGL. DEV. = 15.4 DEGREES REMARK 500 LEU D 88 CA - CB - CG ANGL. DEV. = 23.0 DEGREES REMARK 500 LEU D 88 CB - CG - CD2 ANGL. DEV. = -15.5 DEGREES REMARK 500 PRO E 54 N - CA - C ANGL. DEV. = 17.4 DEGREES REMARK 500 PRO E 54 CA - C - N ANGL. DEV. = 14.5 DEGREES REMARK 500 ASN E 55 C - N - CA ANGL. DEV. = 15.4 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLN A 29 70.98 -105.72 REMARK 500 LYS A 46 -62.79 -123.17 REMARK 500 LEU A 119 41.96 -105.37 REMARK 500 SER A 139 -76.76 -43.54 REMARK 500 SER B 17 0.31 -68.93 REMARK 500 GLU B 19 -49.32 -135.44 REMARK 500 THR B 22 -44.27 -145.23 REMARK 500 THR B 23 -73.19 -76.04 REMARK 500 VAL B 24 -120.51 65.12 REMARK 500 GLU B 78 -41.94 63.45 REMARK 500 GLN D 29 62.69 -102.31 REMARK 500 ASP D 30 112.10 -166.58 REMARK 500 ASP D 45 -61.94 -95.08 REMARK 500 SER D 47 140.95 178.28 REMARK 500 LEU D 87 95.10 91.94 REMARK 500 LEU D 88 34.63 96.47 REMARK 500 LEU D 119 40.71 -105.06 REMARK 500 PHE D 131 -8.37 -59.83 REMARK 500 SER D 132 -65.96 -25.03 REMARK 500 LYS D 137 43.32 -98.16 REMARK 500 SER D 139 -73.88 -36.54 REMARK 500 VAL D 270 40.35 15.32 REMARK 500 VAL E 24 33.44 -147.46 REMARK 500 ASN E 55 -96.27 72.68 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 LEU A 88 PHE A 89 -120.79 REMARK 500 ASN A 126 GLY A 127 -46.77 REMARK 500 GLN A 241 GLU A 242 143.37 REMARK 500 ARG B 18 GLU B 19 -147.86 REMARK 500 LYS D 374 THR D 375 149.92 REMARK 500 ASP E 76 GLY E 77 -42.66 REMARK 500 REMARK 500 REMARK: NULL DBREF 5MSM A 1 380 UNP P25559 DCC1_YEAST 1 380 DBREF 5MSM B 1 133 UNP P38877 CTF8_YEAST 1 133 DBREF 5MSM C 666 741 UNP P49956 CTF18_YEAST 666 741 DBREF 5MSM D 1 380 UNP P25559 DCC1_YEAST 1 380 DBREF 5MSM E 1 133 UNP P38877 CTF8_YEAST 1 133 DBREF 5MSM F 666 741 UNP P49956 CTF18_YEAST 666 741 SEQADV 5MSM SER C 664 UNP P49956 EXPRESSION TAG SEQADV 5MSM GLY C 665 UNP P49956 EXPRESSION TAG SEQADV 5MSM SER F 664 UNP P49956 EXPRESSION TAG SEQADV 5MSM GLY F 665 UNP P49956 EXPRESSION TAG SEQRES 1 A 380 MET SER ILE ASN LEU HIS SER ALA PRO GLU TYR ASP PRO SEQRES 2 A 380 SER TYR LYS LEU ILE GLN LEU THR PRO GLU LEU LEU ASP SEQRES 3 A 380 ILE ILE GLN ASP PRO VAL GLN ASN HIS GLN LEU ARG PHE SEQRES 4 A 380 LYS SER LEU ASP LYS ASP LYS SER GLU VAL VAL LEU CYS SEQRES 5 A 380 SER HIS ASP LYS THR TRP VAL LEU LYS GLN ARG LYS HIS SEQRES 6 A 380 SER ASN THR VAL LEU LEU MET ARG GLU PHE VAL PRO GLU SEQRES 7 A 380 GLN PRO ILE THR PHE ASP GLU THR LEU LEU PHE GLY LEU SEQRES 8 A 380 SER LYS PRO TYR MET ASP VAL VAL GLY PHE ALA LYS THR SEQRES 9 A 380 GLU SER GLU PHE GLU THR ARG GLU THR HIS GLY GLU LEU SEQRES 10 A 380 ASN LEU ASN SER VAL PRO ILE TYR ASN GLY GLU LEU ASP SEQRES 11 A 380 PHE SER ASP LYS ILE MET LYS ARG SER SER THR LYS VAL SEQRES 12 A 380 ILE GLY THR LEU GLU GLU LEU LEU GLU ASN SER PRO CYS SEQRES 13 A 380 SER ALA LEU GLU GLY ILE SER LYS TRP HIS LYS ILE GLY SEQRES 14 A 380 GLY SER VAL LYS ASP GLY VAL LEU CYS ILE LEU SER GLN SEQRES 15 A 380 ASP PHE LEU PHE LYS ALA LEU HIS VAL LEU LEU MET SER SEQRES 16 A 380 ALA MET ALA GLU SER LEU ASP LEU GLN HIS LEU ASN VAL SEQRES 17 A 380 GLU ASP THR HIS HIS ALA VAL GLY LYS ASP ILE GLU ASP SEQRES 18 A 380 GLU PHE ASN PRO TYR THR ARG GLU ILE ILE GLU THR VAL SEQRES 19 A 380 LEU ASN LYS PHE ALA VAL GLN GLU GLN GLU ALA GLU ASN SEQRES 20 A 380 ASN THR TRP ARG LEU ARG ILE PRO PHE ILE ALA GLN TRP SEQRES 21 A 380 TYR GLY ILE GLN ALA LEU ARG LYS TYR VAL SER GLY ILE SEQRES 22 A 380 SER MET PRO ILE ASP GLU PHE LEU ILE LYS TRP LYS SER SEQRES 23 A 380 LEU PHE PRO PRO PHE PHE PRO CYS ASP ILE ASP ILE ASP SEQRES 24 A 380 MET LEU ARG GLY TYR HIS PHE LYS PRO THR ASP LYS THR SEQRES 25 A 380 VAL GLN TYR ILE ALA LYS SER THR LEU PRO MET ASP PRO SEQRES 26 A 380 LYS GLU ARG PHE LYS VAL LEU PHE ARG LEU GLN SER GLN SEQRES 27 A 380 TRP ASP LEU GLU ASP ILE LYS PRO LEU ILE GLU GLU LEU SEQRES 28 A 380 ASN SER ARG GLY MET LYS ILE ASP SER PHE ILE MET LYS SEQRES 29 A 380 TYR ALA ARG ARG LYS ARG LEU GLY LYS LYS THR VAL VAL SEQRES 30 A 380 THR SER ARG SEQRES 1 B 133 MET PRO SER VAL ASP ILE ASP ALA SER GLN TRP GLN LYS SEQRES 2 B 133 LEU THR GLN SER ARG GLU LYS GLN THR THR VAL ILE THR SEQRES 3 B 133 PRO LEU GLY MET MET MET LEU GLU ILE GLN GLY GLU LEU SEQRES 4 B 133 GLU LEU PRO LYS ASP PHE ALA SER LEU ALA ARG ARG ASP SEQRES 5 B 133 SER PRO ASN GLU GLY ARG PHE SER GLU GLN ASP GLY GLU SEQRES 6 B 133 THR LEU ILE ARG PHE GLY SER LEU GLN ILE ASP GLY GLU SEQRES 7 B 133 ARG ALA THR LEU PHE VAL GLY LYS LYS GLN ARG LEU LEU SEQRES 8 B 133 GLY LYS VAL THR LYS LEU ASP VAL PRO MET GLY ILE MET SEQRES 9 B 133 HIS PHE ASN SER LYS ASP ASN LYS VAL GLU LEU VAL ASP SEQRES 10 B 133 VAL MET LYS TYR LYS VAL ILE PHE LYS ASP ARG PRO LEU SEQRES 11 B 133 PRO ILE MET SEQRES 1 C 78 SER GLY LYS VAL LYS THR GLY LEU ASN SER SER SER SER SEQRES 2 C 78 THR ILE ASP PHE PHE LYS ASN GLN TYR GLY LEU LEU LYS SEQRES 3 C 78 GLN THR GLN GLU LEU GLU GLU THR GLN LYS THR ILE GLY SEQRES 4 C 78 SER ASP GLU THR ASN GLN ALA ASP ASP CYS ASN GLN THR SEQRES 5 C 78 VAL LYS ILE TRP VAL LYS TYR ASN GLU GLY PHE SER ASN SEQRES 6 C 78 ALA VAL ARG LYS ASN VAL THR TRP ASN ASN LEU TRP GLU SEQRES 1 D 380 MET SER ILE ASN LEU HIS SER ALA PRO GLU TYR ASP PRO SEQRES 2 D 380 SER TYR LYS LEU ILE GLN LEU THR PRO GLU LEU LEU ASP SEQRES 3 D 380 ILE ILE GLN ASP PRO VAL GLN ASN HIS GLN LEU ARG PHE SEQRES 4 D 380 LYS SER LEU ASP LYS ASP LYS SER GLU VAL VAL LEU CYS SEQRES 5 D 380 SER HIS ASP LYS THR TRP VAL LEU LYS GLN ARG LYS HIS SEQRES 6 D 380 SER ASN THR VAL LEU LEU MET ARG GLU PHE VAL PRO GLU SEQRES 7 D 380 GLN PRO ILE THR PHE ASP GLU THR LEU LEU PHE GLY LEU SEQRES 8 D 380 SER LYS PRO TYR MET ASP VAL VAL GLY PHE ALA LYS THR SEQRES 9 D 380 GLU SER GLU PHE GLU THR ARG GLU THR HIS GLY GLU LEU SEQRES 10 D 380 ASN LEU ASN SER VAL PRO ILE TYR ASN GLY GLU LEU ASP SEQRES 11 D 380 PHE SER ASP LYS ILE MET LYS ARG SER SER THR LYS VAL SEQRES 12 D 380 ILE GLY THR LEU GLU GLU LEU LEU GLU ASN SER PRO CYS SEQRES 13 D 380 SER ALA LEU GLU GLY ILE SER LYS TRP HIS LYS ILE GLY SEQRES 14 D 380 GLY SER VAL LYS ASP GLY VAL LEU CYS ILE LEU SER GLN SEQRES 15 D 380 ASP PHE LEU PHE LYS ALA LEU HIS VAL LEU LEU MET SER SEQRES 16 D 380 ALA MET ALA GLU SER LEU ASP LEU GLN HIS LEU ASN VAL SEQRES 17 D 380 GLU ASP THR HIS HIS ALA VAL GLY LYS ASP ILE GLU ASP SEQRES 18 D 380 GLU PHE ASN PRO TYR THR ARG GLU ILE ILE GLU THR VAL SEQRES 19 D 380 LEU ASN LYS PHE ALA VAL GLN GLU GLN GLU ALA GLU ASN SEQRES 20 D 380 ASN THR TRP ARG LEU ARG ILE PRO PHE ILE ALA GLN TRP SEQRES 21 D 380 TYR GLY ILE GLN ALA LEU ARG LYS TYR VAL SER GLY ILE SEQRES 22 D 380 SER MET PRO ILE ASP GLU PHE LEU ILE LYS TRP LYS SER SEQRES 23 D 380 LEU PHE PRO PRO PHE PHE PRO CYS ASP ILE ASP ILE ASP SEQRES 24 D 380 MET LEU ARG GLY TYR HIS PHE LYS PRO THR ASP LYS THR SEQRES 25 D 380 VAL GLN TYR ILE ALA LYS SER THR LEU PRO MET ASP PRO SEQRES 26 D 380 LYS GLU ARG PHE LYS VAL LEU PHE ARG LEU GLN SER GLN SEQRES 27 D 380 TRP ASP LEU GLU ASP ILE LYS PRO LEU ILE GLU GLU LEU SEQRES 28 D 380 ASN SER ARG GLY MET LYS ILE ASP SER PHE ILE MET LYS SEQRES 29 D 380 TYR ALA ARG ARG LYS ARG LEU GLY LYS LYS THR VAL VAL SEQRES 30 D 380 THR SER ARG SEQRES 1 E 133 MET PRO SER VAL ASP ILE ASP ALA SER GLN TRP GLN LYS SEQRES 2 E 133 LEU THR GLN SER ARG GLU LYS GLN THR THR VAL ILE THR SEQRES 3 E 133 PRO LEU GLY MET MET MET LEU GLU ILE GLN GLY GLU LEU SEQRES 4 E 133 GLU LEU PRO LYS ASP PHE ALA SER LEU ALA ARG ARG ASP SEQRES 5 E 133 SER PRO ASN GLU GLY ARG PHE SER GLU GLN ASP GLY GLU SEQRES 6 E 133 THR LEU ILE ARG PHE GLY SER LEU GLN ILE ASP GLY GLU SEQRES 7 E 133 ARG ALA THR LEU PHE VAL GLY LYS LYS GLN ARG LEU LEU SEQRES 8 E 133 GLY LYS VAL THR LYS LEU ASP VAL PRO MET GLY ILE MET SEQRES 9 E 133 HIS PHE ASN SER LYS ASP ASN LYS VAL GLU LEU VAL ASP SEQRES 10 E 133 VAL MET LYS TYR LYS VAL ILE PHE LYS ASP ARG PRO LEU SEQRES 11 E 133 PRO ILE MET SEQRES 1 F 78 SER GLY LYS VAL LYS THR GLY LEU ASN SER SER SER SER SEQRES 2 F 78 THR ILE ASP PHE PHE LYS ASN GLN TYR GLY LEU LEU LYS SEQRES 3 F 78 GLN THR GLN GLU LEU GLU GLU THR GLN LYS THR ILE GLY SEQRES 4 F 78 SER ASP GLU THR ASN GLN ALA ASP ASP CYS ASN GLN THR SEQRES 5 F 78 VAL LYS ILE TRP VAL LYS TYR ASN GLU GLY PHE SER ASN SEQRES 6 F 78 ALA VAL ARG LYS ASN VAL THR TRP ASN ASN LEU TRP GLU FORMUL 7 HOH *266(H2 O) HELIX 1 AA1 THR A 21 GLN A 29 1 9 HELIX 2 AA2 PHE A 131 LYS A 137 1 7 HELIX 3 AA3 THR A 146 ASN A 153 1 8 HELIX 4 AA4 SER A 157 ILE A 168 1 12 HELIX 5 AA5 SER A 181 GLU A 199 1 19 HELIX 6 AA6 ASN A 207 LYS A 217 1 11 HELIX 7 AA7 GLU A 220 ASN A 224 5 5 HELIX 8 AA8 THR A 227 PHE A 238 1 12 HELIX 9 AA9 ARG A 253 VAL A 270 1 18 HELIX 10 AB1 ILE A 277 LEU A 287 1 11 HELIX 11 AB2 ASP A 297 ARG A 302 5 6 HELIX 12 AB3 ALA A 317 LEU A 321 5 5 HELIX 13 AB4 ASP A 324 GLN A 336 1 13 HELIX 14 AB5 LEU A 341 GLU A 349 1 9 HELIX 15 AB6 GLU A 350 ASN A 352 5 3 HELIX 16 AB7 LYS A 357 TYR A 365 1 9 HELIX 17 AB8 ALA B 8 THR B 15 1 8 HELIX 18 AB9 ASP B 44 ARG B 51 1 8 HELIX 19 AC1 THR C 735 TRP C 740 1 6 HELIX 20 AC2 THR D 21 GLN D 29 1 9 HELIX 21 AC3 PHE D 131 LYS D 137 1 7 HELIX 22 AC4 THR D 146 ASN D 153 1 8 HELIX 23 AC5 SER D 157 GLY D 169 1 13 HELIX 24 AC6 SER D 181 GLU D 199 1 19 HELIX 25 AC7 ASN D 207 LYS D 217 1 11 HELIX 26 AC8 GLU D 220 ASN D 224 5 5 HELIX 27 AC9 THR D 227 PHE D 238 1 12 HELIX 28 AD1 ARG D 253 TYR D 269 1 17 HELIX 29 AD2 ILE D 277 LEU D 287 1 11 HELIX 30 AD3 ASP D 297 ARG D 302 5 6 HELIX 31 AD4 ALA D 317 LEU D 321 5 5 HELIX 32 AD5 ASP D 324 GLN D 336 1 13 HELIX 33 AD6 ILE D 344 ILE D 348 5 5 HELIX 34 AD7 LYS D 357 TYR D 365 1 9 HELIX 35 AD8 ALA E 8 THR E 15 1 8 HELIX 36 AD9 ASP E 44 ARG E 51 1 8 HELIX 37 AE1 THR F 735 TRP F 740 1 6 SHEET 1 A 3 ILE A 3 SER A 7 0 SHEET 2 A 3 MET A 96 LYS A 103 1 SHEET 3 A 3 LEU A 70 PHE A 75 -1 SHEET 1 B 4 ARG A 38 LYS A 40 0 SHEET 2 B 4 VAL A 50 CYS A 52 -1 SHEET 3 B 4 THR A 57 LYS A 64 -1 SHEET 4 B 4 SER A 106 GLU A 112 -1 SHEET 1 C 3 PRO A 123 TYR A 125 0 SHEET 2 C 3 VAL A 176 LEU A 180 1 SHEET 3 C 3 GLY A 170 LYS A 173 -1 SHEET 1 D 2 ALA A 239 GLU A 242 0 SHEET 2 D 2 THR A 249 LEU A 252 -1 SHEET 1 E 2 ALA A 366 ARG A 370 0 SHEET 2 E 2 THR A 375 SER A 379 -1 SHEET 1 F 5 LEU B 33 ILE B 35 0 SHEET 2 F 5 TYR B 121 PHE B 125 1 SHEET 3 F 5 GLN B 88 LYS B 96 -1 SHEET 4 F 5 ARG B 79 VAL B 84 -1 SHEET 5 F 5 GLY B 71 ILE B 75 -1 SHEET 1 G 2 PHE B 59 GLN B 62 0 SHEET 2 G 2 GLU B 65 ILE B 68 -1 SHEET 1 H 2 MET B 101 ASN B 107 0 SHEET 2 H 2 LYS B 112 MET B 119 -1 SHEET 1 I 3 ILE D 3 SER D 7 0 SHEET 2 I 3 MET D 96 THR D 104 1 SHEET 3 I 3 VAL D 69 PHE D 75 -1 SHEET 1 J 4 ARG D 38 LYS D 40 0 SHEET 2 J 4 VAL D 50 CYS D 52 -1 SHEET 3 J 4 THR D 57 LYS D 64 -1 SHEET 4 J 4 SER D 106 GLU D 112 -1 SHEET 1 K 3 PRO D 123 TYR D 125 0 SHEET 2 K 3 VAL D 176 LEU D 180 1 SHEET 3 K 3 GLY D 170 LYS D 173 -1 SHEET 1 L 2 ALA D 239 GLN D 241 0 SHEET 2 L 2 TRP D 250 LEU D 252 -1 SHEET 1 M 2 ALA D 366 LEU D 371 0 SHEET 2 M 2 LYS D 374 SER D 379 -1 SHEET 1 N 5 LEU E 33 ILE E 35 0 SHEET 2 N 5 TYR E 121 PHE E 125 1 SHEET 3 N 5 GLN E 88 LYS E 96 -1 SHEET 4 N 5 ARG E 79 VAL E 84 -1 SHEET 5 N 5 GLY E 71 ASP E 76 -1 SHEET 1 O 2 PHE E 59 GLN E 62 0 SHEET 2 O 2 GLU E 65 ILE E 68 -1 SHEET 1 P 2 MET E 101 ASN E 107 0 SHEET 2 P 2 LYS E 112 MET E 119 -1 CISPEP 1 ASP A 30 PRO A 31 0 26.35 CISPEP 2 THR B 22 THR B 23 0 22.61 CISPEP 3 GLY B 77 GLU B 78 0 -11.27 CISPEP 4 LEU D 87 LEU D 88 0 1.94 CISPEP 5 PRO E 54 ASN E 55 0 28.18 CISPEP 6 PRO E 131 ILE E 132 0 -5.04 CRYST1 58.610 164.220 60.640 90.00 90.55 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.017062 0.000000 0.000164 0.00000 SCALE2 0.000000 0.006089 0.000000 0.00000 SCALE3 0.000000 0.000000 0.016492 0.00000