HEADER CELL ADHESION 10-JAN-17 5MTS TITLE COMPLEX OF FIMH LECTIN WITH A TAZMAN (THIAZOLYLAMINOMANNOSIDES) FAMILY TITLE 2 MEMBER KNOWN AS POTENT ANTI-ADHESIVE AGENT AT 2.6 A RESOLUTION COMPND MOL_ID: 1; COMPND 2 MOLECULE: PROTEIN FIMH; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI K-12; SOURCE 3 ORGANISM_TAXID: 83333; SOURCE 4 GENE: FIMH, B4320, JW4283; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS CELL ADHESION, BACTERIAL ADHESIN, TYPE 1 FIMBRIAE, URINARY TRACT KEYWDS 2 INFECTION, CROHN'S DISEASE EXPDTA X-RAY DIFFRACTION AUTHOR J.DE RUYCK,J.BOUCKAERT REVDAT 5 17-JAN-24 5MTS 1 LINK REVDAT 4 16-OCT-19 5MTS 1 REMARK ATOM REVDAT 3 28-JUN-17 5MTS 1 JRNL REVDAT 2 19-APR-17 5MTS 1 JRNL REVDAT 1 15-MAR-17 5MTS 0 JRNL AUTH D.ALVAREZ DORTA,T.CHALOPIN,A.SIVIGNON,J.DE RUYCK,T.I.DUMYCH, JRNL AUTH 2 R.O.BILYY,D.DENIAUD,N.BARNICH,J.BOUCKAERT,S.G.GOUIN JRNL TITL PHYSIOCHEMICAL TUNING OF POTENT ESCHERICHIA COLI JRNL TITL 2 ANTI-ADHESIVES BY MICROENCAPSULATION AND METHYLENE JRNL TITL 3 HOMOLOGATION. JRNL REF CHEMMEDCHEM V. 12 986 2017 JRNL REFN ESSN 1860-7187 JRNL PMID 28257558 JRNL DOI 10.1002/CMDC.201700061 REMARK 2 REMARK 2 RESOLUTION. 2.60 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.10.1_2155: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.60 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 45.14 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.160 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 3 NUMBER OF REFLECTIONS : 12883 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.178 REMARK 3 R VALUE (WORKING SET) : 0.170 REMARK 3 FREE R VALUE : 0.250 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 9.950 REMARK 3 FREE R VALUE TEST SET COUNT : 1282 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 45.1453 - 5.4055 0.98 1386 149 0.1581 0.2201 REMARK 3 2 5.4055 - 4.2916 0.99 1308 143 0.1201 0.1971 REMARK 3 3 4.2916 - 3.7494 1.00 1281 149 0.1332 0.2257 REMARK 3 4 3.7494 - 3.4067 1.00 1302 138 0.1501 0.2257 REMARK 3 5 3.4067 - 3.1626 1.00 1264 140 0.1754 0.2521 REMARK 3 6 3.1626 - 2.9762 1.00 1282 140 0.2240 0.2811 REMARK 3 7 2.9762 - 2.8271 1.00 1249 154 0.2371 0.3539 REMARK 3 8 2.8271 - 2.7041 1.00 1281 130 0.2748 0.3731 REMARK 3 9 2.7041 - 2.6000 1.00 1248 139 0.3141 0.3876 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.390 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 27.280 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.008 2534 REMARK 3 ANGLE : 1.079 3495 REMARK 3 CHIRALITY : 0.056 407 REMARK 3 PLANARITY : 0.007 449 REMARK 3 DIHEDRAL : 15.571 1451 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5MTS COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 10-JAN-17. REMARK 100 THE DEPOSITION ID IS D_1200002670. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 17-JUN-15 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID29 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.987 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 12883 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.600 REMARK 200 RESOLUTION RANGE LOW (A) : 45.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 200 DATA REDUNDANCY : 3.600 REMARK 200 R MERGE (I) : 0.14800 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 7.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 1UWF REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): NULL REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): NULL REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1.0 M LI2SO4 0.1 M TRIS-HCL 0.01 M REMARK 280 NICL2 3% GLYCEROL, PH 8.5, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 300K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 43 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+3/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+1/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+3/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+1/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 48.88250 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 45.13850 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 45.13850 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 73.32375 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 45.13850 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 45.13850 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 24.44125 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 45.13850 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 45.13850 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 73.32375 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 45.13850 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 45.13850 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 24.44125 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 48.88250 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 558 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 559 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -20 REMARK 465 LYS A -19 REMARK 465 ARG A -18 REMARK 465 VAL A -17 REMARK 465 ILE A -16 REMARK 465 THR A -15 REMARK 465 LEU A -14 REMARK 465 PHE A -13 REMARK 465 ALA A -12 REMARK 465 VAL A -11 REMARK 465 LEU A -10 REMARK 465 LEU A -9 REMARK 465 MET A -8 REMARK 465 GLY A -7 REMARK 465 TRP A -6 REMARK 465 SER A -5 REMARK 465 VAL A -4 REMARK 465 ASN A -3 REMARK 465 ALA A -2 REMARK 465 TRP A -1 REMARK 465 SER A 0 REMARK 465 GLY A 159 REMARK 465 GLY A 160 REMARK 465 CYS A 161 REMARK 465 ASP A 162 REMARK 465 VAL A 163 REMARK 465 SER A 164 REMARK 465 ALA A 165 REMARK 465 ARG A 166 REMARK 465 ASP A 167 REMARK 465 VAL A 168 REMARK 465 THR A 169 REMARK 465 VAL A 170 REMARK 465 THR A 171 REMARK 465 LEU A 172 REMARK 465 PRO A 173 REMARK 465 ASP A 174 REMARK 465 TYR A 175 REMARK 465 PRO A 176 REMARK 465 GLY A 177 REMARK 465 SER A 178 REMARK 465 VAL A 179 REMARK 465 PRO A 180 REMARK 465 ILE A 181 REMARK 465 PRO A 182 REMARK 465 LEU A 183 REMARK 465 THR A 184 REMARK 465 VAL A 185 REMARK 465 TYR A 186 REMARK 465 CYS A 187 REMARK 465 ALA A 188 REMARK 465 LYS A 189 REMARK 465 SER A 190 REMARK 465 GLN A 191 REMARK 465 ASN A 192 REMARK 465 LEU A 193 REMARK 465 GLY A 194 REMARK 465 TYR A 195 REMARK 465 TYR A 196 REMARK 465 LEU A 197 REMARK 465 SER A 198 REMARK 465 GLY A 199 REMARK 465 THR A 200 REMARK 465 THR A 201 REMARK 465 ALA A 202 REMARK 465 ASP A 203 REMARK 465 ALA A 204 REMARK 465 GLY A 205 REMARK 465 ASN A 206 REMARK 465 SER A 207 REMARK 465 ILE A 208 REMARK 465 PHE A 209 REMARK 465 THR A 210 REMARK 465 ASN A 211 REMARK 465 THR A 212 REMARK 465 ALA A 213 REMARK 465 SER A 214 REMARK 465 PHE A 215 REMARK 465 SER A 216 REMARK 465 PRO A 217 REMARK 465 ALA A 218 REMARK 465 GLN A 219 REMARK 465 GLY A 220 REMARK 465 VAL A 221 REMARK 465 GLY A 222 REMARK 465 VAL A 223 REMARK 465 GLN A 224 REMARK 465 LEU A 225 REMARK 465 THR A 226 REMARK 465 ARG A 227 REMARK 465 ASN A 228 REMARK 465 GLY A 229 REMARK 465 THR A 230 REMARK 465 ILE A 231 REMARK 465 ILE A 232 REMARK 465 PRO A 233 REMARK 465 ALA A 234 REMARK 465 ASN A 235 REMARK 465 ASN A 236 REMARK 465 THR A 237 REMARK 465 VAL A 238 REMARK 465 SER A 239 REMARK 465 LEU A 240 REMARK 465 GLY A 241 REMARK 465 ALA A 242 REMARK 465 VAL A 243 REMARK 465 GLY A 244 REMARK 465 THR A 245 REMARK 465 SER A 246 REMARK 465 ALA A 247 REMARK 465 VAL A 248 REMARK 465 SER A 249 REMARK 465 LEU A 250 REMARK 465 GLY A 251 REMARK 465 LEU A 252 REMARK 465 THR A 253 REMARK 465 ALA A 254 REMARK 465 ASN A 255 REMARK 465 TYR A 256 REMARK 465 ALA A 257 REMARK 465 ARG A 258 REMARK 465 THR A 259 REMARK 465 GLY A 260 REMARK 465 GLY A 261 REMARK 465 GLN A 262 REMARK 465 VAL A 263 REMARK 465 THR A 264 REMARK 465 ALA A 265 REMARK 465 GLY A 266 REMARK 465 ASN A 267 REMARK 465 VAL A 268 REMARK 465 GLN A 269 REMARK 465 SER A 270 REMARK 465 ILE A 271 REMARK 465 ILE A 272 REMARK 465 GLY A 273 REMARK 465 VAL A 274 REMARK 465 THR A 275 REMARK 465 PHE A 276 REMARK 465 VAL A 277 REMARK 465 TYR A 278 REMARK 465 GLN A 279 REMARK 465 MET B -20 REMARK 465 LYS B -19 REMARK 465 ARG B -18 REMARK 465 VAL B -17 REMARK 465 ILE B -16 REMARK 465 THR B -15 REMARK 465 LEU B -14 REMARK 465 PHE B -13 REMARK 465 ALA B -12 REMARK 465 VAL B -11 REMARK 465 LEU B -10 REMARK 465 LEU B -9 REMARK 465 MET B -8 REMARK 465 GLY B -7 REMARK 465 TRP B -6 REMARK 465 SER B -5 REMARK 465 VAL B -4 REMARK 465 ASN B -3 REMARK 465 ALA B -2 REMARK 465 TRP B -1 REMARK 465 SER B 0 REMARK 465 GLY B 159 REMARK 465 GLY B 160 REMARK 465 CYS B 161 REMARK 465 ASP B 162 REMARK 465 VAL B 163 REMARK 465 SER B 164 REMARK 465 ALA B 165 REMARK 465 ARG B 166 REMARK 465 ASP B 167 REMARK 465 VAL B 168 REMARK 465 THR B 169 REMARK 465 VAL B 170 REMARK 465 THR B 171 REMARK 465 LEU B 172 REMARK 465 PRO B 173 REMARK 465 ASP B 174 REMARK 465 TYR B 175 REMARK 465 PRO B 176 REMARK 465 GLY B 177 REMARK 465 SER B 178 REMARK 465 VAL B 179 REMARK 465 PRO B 180 REMARK 465 ILE B 181 REMARK 465 PRO B 182 REMARK 465 LEU B 183 REMARK 465 THR B 184 REMARK 465 VAL B 185 REMARK 465 TYR B 186 REMARK 465 CYS B 187 REMARK 465 ALA B 188 REMARK 465 LYS B 189 REMARK 465 SER B 190 REMARK 465 GLN B 191 REMARK 465 ASN B 192 REMARK 465 LEU B 193 REMARK 465 GLY B 194 REMARK 465 TYR B 195 REMARK 465 TYR B 196 REMARK 465 LEU B 197 REMARK 465 SER B 198 REMARK 465 GLY B 199 REMARK 465 THR B 200 REMARK 465 THR B 201 REMARK 465 ALA B 202 REMARK 465 ASP B 203 REMARK 465 ALA B 204 REMARK 465 GLY B 205 REMARK 465 ASN B 206 REMARK 465 SER B 207 REMARK 465 ILE B 208 REMARK 465 PHE B 209 REMARK 465 THR B 210 REMARK 465 ASN B 211 REMARK 465 THR B 212 REMARK 465 ALA B 213 REMARK 465 SER B 214 REMARK 465 PHE B 215 REMARK 465 SER B 216 REMARK 465 PRO B 217 REMARK 465 ALA B 218 REMARK 465 GLN B 219 REMARK 465 GLY B 220 REMARK 465 VAL B 221 REMARK 465 GLY B 222 REMARK 465 VAL B 223 REMARK 465 GLN B 224 REMARK 465 LEU B 225 REMARK 465 THR B 226 REMARK 465 ARG B 227 REMARK 465 ASN B 228 REMARK 465 GLY B 229 REMARK 465 THR B 230 REMARK 465 ILE B 231 REMARK 465 ILE B 232 REMARK 465 PRO B 233 REMARK 465 ALA B 234 REMARK 465 ASN B 235 REMARK 465 ASN B 236 REMARK 465 THR B 237 REMARK 465 VAL B 238 REMARK 465 SER B 239 REMARK 465 LEU B 240 REMARK 465 GLY B 241 REMARK 465 ALA B 242 REMARK 465 VAL B 243 REMARK 465 GLY B 244 REMARK 465 THR B 245 REMARK 465 SER B 246 REMARK 465 ALA B 247 REMARK 465 VAL B 248 REMARK 465 SER B 249 REMARK 465 LEU B 250 REMARK 465 GLY B 251 REMARK 465 LEU B 252 REMARK 465 THR B 253 REMARK 465 ALA B 254 REMARK 465 ASN B 255 REMARK 465 TYR B 256 REMARK 465 ALA B 257 REMARK 465 ARG B 258 REMARK 465 THR B 259 REMARK 465 GLY B 260 REMARK 465 GLY B 261 REMARK 465 GLN B 262 REMARK 465 VAL B 263 REMARK 465 THR B 264 REMARK 465 ALA B 265 REMARK 465 GLY B 266 REMARK 465 ASN B 267 REMARK 465 VAL B 268 REMARK 465 GLN B 269 REMARK 465 SER B 270 REMARK 465 ILE B 271 REMARK 465 ILE B 272 REMARK 465 GLY B 273 REMARK 465 VAL B 274 REMARK 465 THR B 275 REMARK 465 PHE B 276 REMARK 465 VAL B 277 REMARK 465 TYR B 278 REMARK 465 GLN B 279 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O ILE A 120 O HOH A 401 1.90 REMARK 500 O HOH B 433 O HOH B 487 1.92 REMARK 500 O GLY A 117 O HOH A 402 1.96 REMARK 500 OE1 GLN B 32 O HOH B 401 1.97 REMARK 500 O HOH A 417 O HOH A 507 1.98 REMARK 500 O VAL B 156 O HOH B 402 1.98 REMARK 500 O HOH B 415 O HOH B 441 2.00 REMARK 500 O SER B 124 O HOH B 403 2.06 REMARK 500 N VAL A 154 O HOH A 401 2.06 REMARK 500 O HOH A 461 O HOH A 518 2.07 REMARK 500 OG1 THR A 9 O HOH A 403 2.08 REMARK 500 O HOH A 493 O HOH A 522 2.08 REMARK 500 O PRO A 104 O HOH A 404 2.09 REMARK 500 O THR A 86 O HOH A 405 2.13 REMARK 500 O HOH A 519 O HOH A 520 2.13 REMARK 500 O HOH B 479 O HOH B 517 2.14 REMARK 500 O GLY A 66 O HOH A 406 2.14 REMARK 500 O HOH B 418 O HOH B 426 2.14 REMARK 500 O PHE B 142 O HOH B 404 2.16 REMARK 500 NH1 ARG A 60 O HOH A 407 2.16 REMARK 500 O VAL B 154 O HOH B 405 2.17 REMARK 500 O HOH B 421 O HOH B 513 2.17 REMARK 500 O HOH A 402 O HOH A 467 2.17 REMARK 500 O HOH B 427 O HOH B 499 2.18 REMARK 500 O HOH A 419 O HOH A 501 2.18 REMARK 500 O HOH A 514 O HOH A 522 2.19 REMARK 500 O HOH A 414 O HOH A 465 2.19 REMARK 500 O HOH A 475 O HOH A 519 2.19 REMARK 500 O HOH A 497 O HOH A 548 2.19 REMARK 500 OD2 ASP B 54 O6 XKA B 301 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 NH2 ARG B 60 O TYR B 137 4445 2.12 REMARK 500 O HOH A 534 O HOH B 500 4445 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 TYR A 48 62.54 -162.78 REMARK 500 ARG A 60 136.01 -170.97 REMARK 500 SER A 88 148.95 -172.14 REMARK 500 THR A 134 -166.53 -115.13 REMARK 500 TYR A 137 -55.13 -126.32 REMARK 500 ASN A 138 -164.19 -129.75 REMARK 500 ILE B 13 131.11 -34.75 REMARK 500 ASN B 29 -155.92 -90.14 REMARK 500 TYR B 48 71.17 -158.33 REMARK 500 ARG B 60 139.37 -170.64 REMARK 500 ASN B 96 37.75 -144.12 REMARK 500 SER B 114 39.53 -93.64 REMARK 500 ALA B 119 -76.31 -55.15 REMARK 500 TYR B 137 -51.50 -122.14 REMARK 500 ASN B 138 -149.86 -135.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 554 DISTANCE = 5.86 ANGSTROMS REMARK 525 HOH A 555 DISTANCE = 6.29 ANGSTROMS REMARK 525 HOH A 556 DISTANCE = 6.35 ANGSTROMS REMARK 525 HOH A 557 DISTANCE = 8.54 ANGSTROMS REMARK 525 HOH A 558 DISTANCE = 9.00 ANGSTROMS REMARK 525 HOH A 559 DISTANCE = 9.51 ANGSTROMS REMARK 525 HOH A 560 DISTANCE = 10.65 ANGSTROMS REMARK 525 HOH A 561 DISTANCE = 11.12 ANGSTROMS REMARK 525 HOH A 562 DISTANCE = 13.05 ANGSTROMS REMARK 525 HOH B 542 DISTANCE = 6.21 ANGSTROMS REMARK 525 HOH B 543 DISTANCE = 7.18 ANGSTROMS REMARK 525 HOH B 544 DISTANCE = 7.48 ANGSTROMS REMARK 525 HOH B 545 DISTANCE = 9.45 ANGSTROMS REMARK 525 HOH B 546 DISTANCE = 10.22 ANGSTROMS REMARK 525 HOH B 547 DISTANCE = 14.60 ANGSTROMS REMARK 525 HOH B 548 DISTANCE = 14.78 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NI A 302 NI REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 45 NE2 REMARK 620 2 ASP A 47 OD1 94.0 REMARK 620 3 HOH A 415 O 85.5 63.9 REMARK 620 4 HOH A 475 O 173.2 79.3 92.5 REMARK 620 5 HOH A 491 O 115.2 90.8 149.2 64.1 REMARK 620 6 HOH A 519 O 124.7 116.4 70.8 60.3 109.5 REMARK 620 7 HOH A 520 O 116.2 146.8 128.2 70.0 64.9 58.0 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NI B 302 NI REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A 518 O REMARK 620 2 HIS B 45 NE2 177.8 REMARK 620 3 ASP B 47 OD1 106.2 75.9 REMARK 620 4 HOH B 416 O 100.9 80.0 85.4 REMARK 620 5 HOH B 446 O 80.6 98.3 96.5 177.1 REMARK 620 6 HOH B 504 O 71.6 106.3 177.3 96.5 81.6 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue XKA A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NI A 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue XKA B 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NI B 302 DBREF 5MTS A -20 279 UNP P08191 FIMH_ECOLI 1 300 DBREF 5MTS B -20 279 UNP P08191 FIMH_ECOLI 1 300 SEQRES 1 A 300 MET LYS ARG VAL ILE THR LEU PHE ALA VAL LEU LEU MET SEQRES 2 A 300 GLY TRP SER VAL ASN ALA TRP SER PHE ALA CYS LYS THR SEQRES 3 A 300 ALA ASN GLY THR ALA ILE PRO ILE GLY GLY GLY SER ALA SEQRES 4 A 300 ASN VAL TYR VAL ASN LEU ALA PRO VAL VAL ASN VAL GLY SEQRES 5 A 300 GLN ASN LEU VAL VAL ASP LEU SER THR GLN ILE PHE CYS SEQRES 6 A 300 HIS ASN ASP TYR PRO GLU THR ILE THR ASP TYR VAL THR SEQRES 7 A 300 LEU GLN ARG GLY SER ALA TYR GLY GLY VAL LEU SER ASN SEQRES 8 A 300 PHE SER GLY THR VAL LYS TYR SER GLY SER SER TYR PRO SEQRES 9 A 300 PHE PRO THR THR SER GLU THR PRO ARG VAL VAL TYR ASN SEQRES 10 A 300 SER ARG THR ASP LYS PRO TRP PRO VAL ALA LEU TYR LEU SEQRES 11 A 300 THR PRO VAL SER SER ALA GLY GLY VAL ALA ILE LYS ALA SEQRES 12 A 300 GLY SER LEU ILE ALA VAL LEU ILE LEU ARG GLN THR ASN SEQRES 13 A 300 ASN TYR ASN SER ASP ASP PHE GLN PHE VAL TRP ASN ILE SEQRES 14 A 300 TYR ALA ASN ASN ASP VAL VAL VAL PRO THR GLY GLY CYS SEQRES 15 A 300 ASP VAL SER ALA ARG ASP VAL THR VAL THR LEU PRO ASP SEQRES 16 A 300 TYR PRO GLY SER VAL PRO ILE PRO LEU THR VAL TYR CYS SEQRES 17 A 300 ALA LYS SER GLN ASN LEU GLY TYR TYR LEU SER GLY THR SEQRES 18 A 300 THR ALA ASP ALA GLY ASN SER ILE PHE THR ASN THR ALA SEQRES 19 A 300 SER PHE SER PRO ALA GLN GLY VAL GLY VAL GLN LEU THR SEQRES 20 A 300 ARG ASN GLY THR ILE ILE PRO ALA ASN ASN THR VAL SER SEQRES 21 A 300 LEU GLY ALA VAL GLY THR SER ALA VAL SER LEU GLY LEU SEQRES 22 A 300 THR ALA ASN TYR ALA ARG THR GLY GLY GLN VAL THR ALA SEQRES 23 A 300 GLY ASN VAL GLN SER ILE ILE GLY VAL THR PHE VAL TYR SEQRES 24 A 300 GLN SEQRES 1 B 300 MET LYS ARG VAL ILE THR LEU PHE ALA VAL LEU LEU MET SEQRES 2 B 300 GLY TRP SER VAL ASN ALA TRP SER PHE ALA CYS LYS THR SEQRES 3 B 300 ALA ASN GLY THR ALA ILE PRO ILE GLY GLY GLY SER ALA SEQRES 4 B 300 ASN VAL TYR VAL ASN LEU ALA PRO VAL VAL ASN VAL GLY SEQRES 5 B 300 GLN ASN LEU VAL VAL ASP LEU SER THR GLN ILE PHE CYS SEQRES 6 B 300 HIS ASN ASP TYR PRO GLU THR ILE THR ASP TYR VAL THR SEQRES 7 B 300 LEU GLN ARG GLY SER ALA TYR GLY GLY VAL LEU SER ASN SEQRES 8 B 300 PHE SER GLY THR VAL LYS TYR SER GLY SER SER TYR PRO SEQRES 9 B 300 PHE PRO THR THR SER GLU THR PRO ARG VAL VAL TYR ASN SEQRES 10 B 300 SER ARG THR ASP LYS PRO TRP PRO VAL ALA LEU TYR LEU SEQRES 11 B 300 THR PRO VAL SER SER ALA GLY GLY VAL ALA ILE LYS ALA SEQRES 12 B 300 GLY SER LEU ILE ALA VAL LEU ILE LEU ARG GLN THR ASN SEQRES 13 B 300 ASN TYR ASN SER ASP ASP PHE GLN PHE VAL TRP ASN ILE SEQRES 14 B 300 TYR ALA ASN ASN ASP VAL VAL VAL PRO THR GLY GLY CYS SEQRES 15 B 300 ASP VAL SER ALA ARG ASP VAL THR VAL THR LEU PRO ASP SEQRES 16 B 300 TYR PRO GLY SER VAL PRO ILE PRO LEU THR VAL TYR CYS SEQRES 17 B 300 ALA LYS SER GLN ASN LEU GLY TYR TYR LEU SER GLY THR SEQRES 18 B 300 THR ALA ASP ALA GLY ASN SER ILE PHE THR ASN THR ALA SEQRES 19 B 300 SER PHE SER PRO ALA GLN GLY VAL GLY VAL GLN LEU THR SEQRES 20 B 300 ARG ASN GLY THR ILE ILE PRO ALA ASN ASN THR VAL SER SEQRES 21 B 300 LEU GLY ALA VAL GLY THR SER ALA VAL SER LEU GLY LEU SEQRES 22 B 300 THR ALA ASN TYR ALA ARG THR GLY GLY GLN VAL THR ALA SEQRES 23 B 300 GLY ASN VAL GLN SER ILE ILE GLY VAL THR PHE VAL TYR SEQRES 24 B 300 GLN HET XKA A 301 31 HET NI A 302 1 HET XKA B 301 31 HET NI B 302 1 HETNAM XKA [2-[[(2~{S},3~{S},4~{S},5~{S},6~{R})-6-(HYDROXYMETHYL)- HETNAM 2 XKA 3,4,5-TRIS(OXIDANYL)OXAN-2-YL]AMINO]-1,3-THIAZOL-5- HETNAM 3 XKA YL]-(4-METHYL-2-PYRAZIN-2-YL-1,3-THIAZOL-5-YL) HETNAM 4 XKA METHANONE HETNAM NI NICKEL (II) ION FORMUL 3 XKA 2(C18 H19 N5 O6 S2) FORMUL 4 NI 2(NI 2+) FORMUL 7 HOH *310(H2 O) HELIX 1 AA1 TYR A 64 ASN A 70 1 7 HELIX 2 AA2 ASP B 37 THR B 40 5 4 HELIX 3 AA3 TYR B 64 ASN B 70 1 7 SHEET 1 AA1 4 ALA A 10 ILE A 11 0 SHEET 2 AA1 4 ALA A 2 THR A 5 -1 N CYS A 3 O ILE A 11 SHEET 3 AA1 4 ILE A 42 HIS A 45 -1 O PHE A 43 N LYS A 4 SHEET 4 AA1 4 LYS A 101 PRO A 102 -1 O LYS A 101 N CYS A 44 SHEET 1 AA2 5 GLY A 16 VAL A 22 0 SHEET 2 AA2 5 PHE A 142 ALA A 150 1 O VAL A 145 N GLY A 16 SHEET 3 AA2 5 LEU A 125 ASN A 135 -1 N LEU A 131 O PHE A 144 SHEET 4 AA2 5 ASP A 54 ALA A 63 -1 N ARG A 60 O ILE A 130 SHEET 5 AA2 5 VAL A 93 TYR A 95 -1 O TYR A 95 N ASP A 54 SHEET 1 AA3 4 LEU A 34 ASP A 37 0 SHEET 2 AA3 4 VAL A 105 PRO A 111 -1 O LEU A 109 N LEU A 34 SHEET 3 AA3 4 PHE A 71 TYR A 77 -1 N SER A 72 O THR A 110 SHEET 4 AA3 4 SER A 80 PHE A 84 -1 O SER A 80 N TYR A 77 SHEET 1 AA4 2 GLY A 117 ILE A 120 0 SHEET 2 AA4 2 VAL A 154 VAL A 156 -1 O VAL A 154 N ALA A 119 SHEET 1 AA5 4 ALA B 10 ILE B 11 0 SHEET 2 AA5 4 ALA B 2 THR B 5 -1 N CYS B 3 O ILE B 11 SHEET 3 AA5 4 ILE B 42 HIS B 45 -1 O PHE B 43 N LYS B 4 SHEET 4 AA5 4 LYS B 101 PRO B 102 -1 O LYS B 101 N CYS B 44 SHEET 1 AA6 5 GLY B 16 VAL B 22 0 SHEET 2 AA6 5 PHE B 142 ALA B 150 1 O VAL B 145 N GLY B 16 SHEET 3 AA6 5 LEU B 125 ASN B 135 -1 N LEU B 131 O PHE B 144 SHEET 4 AA6 5 ASP B 54 ALA B 63 -1 N TYR B 55 O THR B 134 SHEET 5 AA6 5 VAL B 93 TYR B 95 -1 O TYR B 95 N ASP B 54 SHEET 1 AA7 4 LEU B 34 VAL B 36 0 SHEET 2 AA7 4 VAL B 105 PRO B 111 -1 O LEU B 109 N LEU B 34 SHEET 3 AA7 4 PHE B 71 TYR B 77 -1 N THR B 74 O TYR B 108 SHEET 4 AA7 4 SER B 80 PHE B 84 -1 O TYR B 82 N VAL B 75 SSBOND 1 CYS A 3 CYS A 44 1555 1555 2.03 SSBOND 2 CYS B 3 CYS B 44 1555 1555 2.04 LINK NE2 HIS A 45 NI NI A 302 1555 1555 2.00 LINK OD1 ASP A 47 NI NI A 302 1555 1555 2.32 LINK NI NI A 302 O HOH A 415 1555 1555 2.01 LINK NI NI A 302 O HOH A 475 1555 1555 2.25 LINK NI NI A 302 O HOH A 491 1555 1555 2.50 LINK NI NI A 302 O HOH A 519 1555 1555 2.11 LINK NI NI A 302 O HOH A 520 1555 1555 2.28 LINK O HOH A 518 NI NI B 302 4444 1555 2.27 LINK NE2 HIS B 45 NI NI B 302 1555 1555 1.91 LINK OD1 ASP B 47 NI NI B 302 1555 1555 2.27 LINK NI NI B 302 O HOH B 416 1555 1555 1.77 LINK NI NI B 302 O HOH B 446 1555 1555 2.12 LINK NI NI B 302 O HOH B 504 1555 1555 2.35 CISPEP 1 PHE A 84 PRO A 85 0 -6.43 CISPEP 2 PHE B 84 PRO B 85 0 -3.21 SITE 1 AC1 17 PHE A 1 ILE A 13 ASN A 46 ASP A 47 SITE 2 AC1 17 TYR A 48 ILE A 52 ASP A 54 GLN A 133 SITE 3 AC1 17 ASN A 135 ASP A 140 PHE A 142 HOH A 435 SITE 4 AC1 17 HOH A 472 HOH A 483 ILE B 13 PHE B 142 SITE 5 AC1 17 XKA B 301 SITE 1 AC2 7 HIS A 45 ASP A 47 HOH A 415 HOH A 475 SITE 2 AC2 7 HOH A 491 HOH A 519 HOH A 520 SITE 1 AC3 14 PHE A 142 XKA A 301 PHE B 1 ILE B 13 SITE 2 AC3 14 ASN B 46 ASP B 47 TYR B 48 ILE B 52 SITE 3 AC3 14 ASP B 54 GLN B 133 ASN B 135 ASP B 140 SITE 4 AC3 14 HOH B 423 HOH B 463 SITE 1 AC4 6 HOH A 518 HIS B 45 ASP B 47 HOH B 416 SITE 2 AC4 6 HOH B 446 HOH B 504 CRYST1 90.277 90.277 97.765 90.00 90.00 90.00 P 43 21 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011077 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011077 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010229 0.00000