HEADER ENDOCYTOSIS 10-JAN-17 5MTV TITLE ACTIVE STRUCTURE OF EHD4 COMPLEXED WITH ATP-GAMMA-S COMPND MOL_ID: 1; COMPND 2 MOLECULE: EH DOMAIN-CONTAINING PROTEIN 4; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: PAST HOMOLOG 2,MPAST2, EPS15-HOMOLOGY CONTAINING PROTEIN COMPND 5 (EHD) 4; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 3 ORGANISM_COMMON: HOUSE MOUSE; SOURCE 4 ORGANISM_TAXID: 10090; SOURCE 5 GENE: EHD4, PAST2; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS DYNAMIN-LIKE, MEMBRANE PROTEIN, AUTO-INHIBITION, ACTIVATION, KEYWDS 2 ENDOCYTOSIS EXPDTA X-RAY DIFFRACTION AUTHOR A.A.MELO,O.DAUMKE REVDAT 4 17-JAN-24 5MTV 1 REMARK REVDAT 3 06-SEP-17 5MTV 1 REMARK REVDAT 2 07-JUN-17 5MTV 1 JRNL REVDAT 1 08-MAR-17 5MTV 0 JRNL AUTH A.A.MELO,B.G.HEGDE,C.SHAH,E.LARSSON,J.M.ISAS,S.KUNZ, JRNL AUTH 2 R.LUNDMARK,R.LANGEN,O.DAUMKE JRNL TITL STRUCTURAL INSIGHTS INTO THE ACTIVATION MECHANISM OF JRNL TITL 2 DYNAMIN-LIKE EHD ATPASES. JRNL REF PROC. NATL. ACAD. SCI. V. 114 5629 2017 JRNL REF 2 U.S.A. JRNL REFN ESSN 1091-6490 JRNL PMID 28228524 JRNL DOI 10.1073/PNAS.1614075114 REMARK 2 REMARK 2 RESOLUTION. 2.79 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.11.1_2575) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.79 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 48.50 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.380 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 21733 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.228 REMARK 3 R VALUE (WORKING SET) : 0.227 REMARK 3 FREE R VALUE : 0.243 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1087 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 48.5079 - 5.5740 1.00 2788 147 0.2031 0.2203 REMARK 3 2 5.5740 - 4.4252 1.00 2618 138 0.1934 0.2149 REMARK 3 3 4.4252 - 3.8661 1.00 2571 135 0.2100 0.2123 REMARK 3 4 3.8661 - 3.5127 1.00 2556 135 0.2292 0.2399 REMARK 3 5 3.5127 - 3.2610 1.00 2561 135 0.2590 0.2645 REMARK 3 6 3.2610 - 3.0688 1.00 2537 133 0.2953 0.3127 REMARK 3 7 3.0688 - 2.9151 1.00 2519 133 0.3026 0.3765 REMARK 3 8 2.9151 - 2.7882 0.99 2496 131 0.3233 0.3520 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.450 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 25.070 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 64.30 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 82.32 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.011 3172 REMARK 3 ANGLE : 0.785 4284 REMARK 3 CHIRALITY : 0.040 466 REMARK 3 PLANARITY : 0.002 549 REMARK 3 DIHEDRAL : 11.623 1927 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 3 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 19 THROUGH 73 ) REMARK 3 ORIGIN FOR THE GROUP (A): 69.5222 185.5605 40.6755 REMARK 3 T TENSOR REMARK 3 T11: 0.7735 T22: 0.5632 REMARK 3 T33: 0.5722 T12: -0.0462 REMARK 3 T13: -0.2053 T23: -0.1194 REMARK 3 L TENSOR REMARK 3 L11: 1.0659 L22: 8.9047 REMARK 3 L33: 4.2535 L12: 1.7289 REMARK 3 L13: -1.3137 L23: -6.1465 REMARK 3 S TENSOR REMARK 3 S11: 0.1126 S12: -0.3028 S13: 0.1429 REMARK 3 S21: 0.9296 S22: -0.4177 S23: -0.5009 REMARK 3 S31: -0.6214 S32: -0.0204 S33: 0.3955 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 74 THROUGH 267 ) REMARK 3 ORIGIN FOR THE GROUP (A): 59.2700 165.7187 53.7261 REMARK 3 T TENSOR REMARK 3 T11: 0.5721 T22: 0.6083 REMARK 3 T33: 0.5517 T12: 0.0584 REMARK 3 T13: -0.0705 T23: -0.1116 REMARK 3 L TENSOR REMARK 3 L11: 2.9022 L22: 6.4689 REMARK 3 L33: 3.7932 L12: 3.2615 REMARK 3 L13: 1.5544 L23: 2.7152 REMARK 3 S TENSOR REMARK 3 S11: -0.0295 S12: -0.5814 S13: 0.2521 REMARK 3 S21: 0.1377 S22: -0.3415 S23: 0.4474 REMARK 3 S31: -0.4477 S32: -0.3789 S33: 0.3944 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 268 THROUGH 403 ) REMARK 3 ORIGIN FOR THE GROUP (A): 63.6264 191.3005 28.9481 REMARK 3 T TENSOR REMARK 3 T11: 0.6767 T22: 0.6313 REMARK 3 T33: 0.5630 T12: 0.0078 REMARK 3 T13: -0.0644 T23: -0.0637 REMARK 3 L TENSOR REMARK 3 L11: 0.8660 L22: 6.1079 REMARK 3 L33: 0.3502 L12: 0.8735 REMARK 3 L13: -0.2074 L23: -0.9380 REMARK 3 S TENSOR REMARK 3 S11: -0.0205 S12: 0.1729 S13: 0.0905 REMARK 3 S21: -0.3321 S22: 0.0114 S23: 0.4905 REMARK 3 S31: 0.0229 S32: -0.1305 S33: -0.0191 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5MTV COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 11-JAN-17. REMARK 100 THE DEPOSITION ID IS D_1200002880. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 19-JUL-15 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : BESSY REMARK 200 BEAMLINE : 14.1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.918409 REMARK 200 MONOCHROMATOR : DOUBLE SI-111 CRYSTAL REMARK 200 OPTICS : DOUBLE MIRROR REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 21733 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.790 REMARK 200 RESOLUTION RANGE LOW (A) : 48.500 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 7.200 REMARK 200 R MERGE (I) : 0.09500 REMARK 200 R SYM (I) : 0.08800 REMARK 200 FOR THE DATA SET : 19.0400 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.79 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.96 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.2 REMARK 200 DATA REDUNDANCY IN SHELL : 7.65 REMARK 200 R MERGE FOR SHELL (I) : 0.91000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.150 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 4CID REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 64.86 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.50 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: SODIUM POLYACRYLATE 5100, MAGNESIUM REMARK 280 CHLORIDE, HEPES, PH 7.5, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 42 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -Y+1/2,X+1/2,Z+1/2 REMARK 290 4555 Y+1/2,-X+1/2,Z+1/2 REMARK 290 5555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 6555 X+1/2,-Y+1/2,-Z+1/2 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 99.98650 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 99.98650 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 20.76850 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 99.98650 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 99.98650 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 20.76850 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 99.98650 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 99.98650 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 20.76850 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 99.98650 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 99.98650 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 20.76850 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4360 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 36660 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -47.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.000000 -1.000000 0.000000 199.97300 REMARK 350 BIOMT2 2 -1.000000 0.000000 0.000000 199.97300 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 83.07400 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A1102 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A 162 REMARK 465 GLY A 163 REMARK 465 GLU A 164 REMARK 465 LYS A 165 REMARK 465 GLN A 166 REMARK 465 ARG A 167 REMARK 465 GLU A 404 REMARK 465 MET A 405 REMARK 465 ASN A 406 REMARK 465 MET A 407 REMARK 465 PRO A 408 REMARK 465 THR A 409 REMARK 465 GLN A 410 REMARK 465 MET A 411 REMARK 465 VAL A 412 REMARK 465 GLN A 413 REMARK 465 GLY A 414 REMARK 465 GLY A 415 REMARK 465 ALA A 416 REMARK 465 PHE A 417 REMARK 465 ASP A 418 REMARK 465 GLY A 419 REMARK 465 THR A 420 REMARK 465 THR A 421 REMARK 465 GLU A 422 REMARK 465 GLY A 423 REMARK 465 PRO A 424 REMARK 465 PHE A 425 REMARK 465 ASN A 426 REMARK 465 GLN A 427 REMARK 465 GLY A 428 REMARK 465 TYR A 429 REMARK 465 GLY A 430 REMARK 465 GLU A 431 REMARK 465 GLY A 432 REMARK 465 ALA A 433 REMARK 465 LYS A 434 REMARK 465 GLU A 435 REMARK 465 GLY A 436 REMARK 465 ALA A 437 REMARK 465 ASP A 438 REMARK 465 GLU A 439 REMARK 465 GLU A 440 REMARK 465 GLU A 441 REMARK 465 TRP A 442 REMARK 465 VAL A 443 REMARK 465 VAL A 444 REMARK 465 ALA A 445 REMARK 465 LYS A 446 REMARK 465 ASP A 447 REMARK 465 LYS A 448 REMARK 465 PRO A 449 REMARK 465 VAL A 450 REMARK 465 TYR A 451 REMARK 465 ASP A 452 REMARK 465 GLU A 453 REMARK 465 LEU A 454 REMARK 465 PHE A 455 REMARK 465 TYR A 456 REMARK 465 THR A 457 REMARK 465 LEU A 458 REMARK 465 SER A 459 REMARK 465 PRO A 460 REMARK 465 ILE A 461 REMARK 465 ASN A 462 REMARK 465 GLY A 463 REMARK 465 LYS A 464 REMARK 465 ILE A 465 REMARK 465 SER A 466 REMARK 465 GLY A 467 REMARK 465 VAL A 468 REMARK 465 ASN A 469 REMARK 465 ALA A 470 REMARK 465 LYS A 471 REMARK 465 LYS A 472 REMARK 465 GLU A 473 REMARK 465 MET A 474 REMARK 465 VAL A 475 REMARK 465 THR A 476 REMARK 465 SER A 477 REMARK 465 LYS A 478 REMARK 465 LEU A 479 REMARK 465 PRO A 480 REMARK 465 ASN A 481 REMARK 465 SER A 482 REMARK 465 VAL A 483 REMARK 465 LEU A 484 REMARK 465 GLY A 485 REMARK 465 LYS A 486 REMARK 465 ILE A 487 REMARK 465 TRP A 488 REMARK 465 LYS A 489 REMARK 465 LEU A 490 REMARK 465 ALA A 491 REMARK 465 ASP A 492 REMARK 465 CYS A 493 REMARK 465 ASP A 494 REMARK 465 CYS A 495 REMARK 465 ASP A 496 REMARK 465 GLY A 497 REMARK 465 MET A 498 REMARK 465 LEU A 499 REMARK 465 ASP A 500 REMARK 465 GLU A 501 REMARK 465 GLU A 502 REMARK 465 GLU A 503 REMARK 465 PHE A 504 REMARK 465 ALA A 505 REMARK 465 LEU A 506 REMARK 465 ALA A 507 REMARK 465 LYS A 508 REMARK 465 HIS A 509 REMARK 465 LEU A 510 REMARK 465 ILE A 511 REMARK 465 LYS A 512 REMARK 465 ILE A 513 REMARK 465 LYS A 514 REMARK 465 LEU A 515 REMARK 465 ASP A 516 REMARK 465 GLY A 517 REMARK 465 TYR A 518 REMARK 465 GLU A 519 REMARK 465 LEU A 520 REMARK 465 PRO A 521 REMARK 465 ASN A 522 REMARK 465 SER A 523 REMARK 465 LEU A 524 REMARK 465 PRO A 525 REMARK 465 PRO A 526 REMARK 465 HIS A 527 REMARK 465 LEU A 528 REMARK 465 VAL A 529 REMARK 465 PRO A 530 REMARK 465 PRO A 531 REMARK 465 SER A 532 REMARK 465 HIS A 533 REMARK 465 ARG A 534 REMARK 465 LYS A 535 REMARK 465 SER A 536 REMARK 465 LEU A 537 REMARK 465 PRO A 538 REMARK 465 LYS A 539 REMARK 465 ALA A 540 REMARK 465 ASP A 541 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 HB THR A 75 MG MG A 1001 1.23 REMARK 500 HH TYR A 70 O PRO A 93 1.59 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLN A 84 145.33 -173.24 REMARK 500 ARG A 90 88.21 54.35 REMARK 500 ASN A 133 -90.70 43.87 REMARK 500 ARG A 170 -168.12 -73.08 REMARK 500 ASP A 173 97.05 -67.52 REMARK 500 LYS A 196 66.05 -163.46 REMARK 500 GLN A 213 33.35 -142.65 REMARK 500 VAL A 246 -62.22 -92.98 REMARK 500 GLN A 266 -70.33 -94.11 REMARK 500 MET A 324 -63.12 -147.72 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A1001 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 THR A 75 OG1 REMARK 620 2 ASP A 156 OD2 95.4 REMARK 620 3 AGS A1000 O2G 108.3 87.4 REMARK 620 4 AGS A1000 O3B 111.0 143.4 61.0 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue AGS A 1000 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG A 1001 DBREF 5MTV A 22 541 UNP Q9EQP2 EHD4_MOUSE 22 541 SEQADV 5MTV GLY A 19 UNP Q9EQP2 EXPRESSION TAG SEQADV 5MTV GLY A 20 UNP Q9EQP2 EXPRESSION TAG SEQADV 5MTV SER A 21 UNP Q9EQP2 EXPRESSION TAG SEQRES 1 A 523 GLY GLY SER GLN THR VAL THR GLY GLY LEU ARG SER LEU SEQRES 2 A 523 TYR GLN ARG LYS VAL LEU PRO LEU GLU GLU ALA TYR ARG SEQRES 3 A 523 PHE HIS GLU PHE HIS SER PRO ALA LEU GLU ASP ALA ASP SEQRES 4 A 523 PHE GLU ASN LYS PRO MET ILE LEU LEU VAL GLY GLN TYR SEQRES 5 A 523 SER THR GLY LYS THR THR PHE ILE ARG TYR LEU LEU GLU SEQRES 6 A 523 GLN ASP PHE PRO GLY MET ARG ILE GLY PRO GLU PRO THR SEQRES 7 A 523 THR ASP SER PHE ILE ALA VAL MET TYR GLY GLU THR GLU SEQRES 8 A 523 GLY SER THR PRO GLY ASN ALA LEU VAL VAL ASP PRO LYS SEQRES 9 A 523 LYS PRO PHE ARG LYS LEU SER ARG PHE GLY ASN ALA PHE SEQRES 10 A 523 LEU ASN ARG PHE MET CYS SER GLN LEU PRO ASN GLN VAL SEQRES 11 A 523 LEU LYS SER ILE SER ILE ILE ASP SER PRO GLY ILE LEU SEQRES 12 A 523 SER GLY GLU LYS GLN ARG ILE SER ARG GLY TYR ASP PHE SEQRES 13 A 523 CYS GLN VAL LEU GLN TRP PHE ALA GLU ARG VAL ASP ARG SEQRES 14 A 523 ILE ILE LEU LEU PHE ASP ALA HIS LYS LEU ASP ILE SER SEQRES 15 A 523 ASP GLU PHE SER GLU ALA ILE LYS ALA PHE ARG GLY GLN SEQRES 16 A 523 ASP ASP LYS ILE ARG VAL VAL LEU ASN LYS ALA ASP GLN SEQRES 17 A 523 VAL ASP THR GLN GLN LEU MET ARG VAL TYR GLY ALA LEU SEQRES 18 A 523 MET TRP SER LEU GLY LYS VAL ILE ASN THR PRO GLU VAL SEQRES 19 A 523 LEU ARG VAL TYR ILE GLY SER PHE TRP ALA GLN PRO LEU SEQRES 20 A 523 GLN ASN THR ASP ASN ARG ARG LEU PHE GLU ALA GLU ALA SEQRES 21 A 523 GLN ASP LEU PHE ARG ASP ILE GLN SER LEU PRO GLN LYS SEQRES 22 A 523 ALA ALA VAL ARG LYS LEU ASN ASP LEU ILE LYS ARG ALA SEQRES 23 A 523 ARG LEU ALA LYS VAL HIS ALA TYR ILE ILE SER TYR LEU SEQRES 24 A 523 LYS LYS GLU MET PRO ASN MET PHE GLY LYS GLU ASN LYS SEQRES 25 A 523 LYS ARG GLU LEU ILE TYR ARG LEU PRO GLU ILE TYR VAL SEQRES 26 A 523 GLN LEU GLN ARG GLU TYR GLN ILE SER ALA GLY ASP PHE SEQRES 27 A 523 PRO GLU VAL LYS ALA MET GLN GLU GLN LEU GLU ASN TYR SEQRES 28 A 523 ASP PHE THR LYS PHE HIS SER LEU LYS PRO LYS LEU ILE SEQRES 29 A 523 GLU ALA VAL ASP ASN MET LEU THR ASN LYS ILE SER SER SEQRES 30 A 523 LEU MET GLY LEU ILE SER GLN GLU GLU MET ASN MET PRO SEQRES 31 A 523 THR GLN MET VAL GLN GLY GLY ALA PHE ASP GLY THR THR SEQRES 32 A 523 GLU GLY PRO PHE ASN GLN GLY TYR GLY GLU GLY ALA LYS SEQRES 33 A 523 GLU GLY ALA ASP GLU GLU GLU TRP VAL VAL ALA LYS ASP SEQRES 34 A 523 LYS PRO VAL TYR ASP GLU LEU PHE TYR THR LEU SER PRO SEQRES 35 A 523 ILE ASN GLY LYS ILE SER GLY VAL ASN ALA LYS LYS GLU SEQRES 36 A 523 MET VAL THR SER LYS LEU PRO ASN SER VAL LEU GLY LYS SEQRES 37 A 523 ILE TRP LYS LEU ALA ASP CYS ASP CYS ASP GLY MET LEU SEQRES 38 A 523 ASP GLU GLU GLU PHE ALA LEU ALA LYS HIS LEU ILE LYS SEQRES 39 A 523 ILE LYS LEU ASP GLY TYR GLU LEU PRO ASN SER LEU PRO SEQRES 40 A 523 PRO HIS LEU VAL PRO PRO SER HIS ARG LYS SER LEU PRO SEQRES 41 A 523 LYS ALA ASP HET AGS A1000 45 HET MG A1001 1 HETNAM AGS PHOSPHOTHIOPHOSPHORIC ACID-ADENYLATE ESTER HETNAM MG MAGNESIUM ION HETSYN AGS ATP-GAMMA-S; ADENOSINE 5'-(3-THIOTRIPHOSPHATE); HETSYN 2 AGS ADENOSINE 5'-(GAMMA-THIOTRIPHOSPHATE); ADENOSINE-5'- HETSYN 3 AGS DIPHOSPHATE MONOTHIOPHOSPHATE FORMUL 2 AGS C10 H16 N5 O12 P3 S FORMUL 3 MG MG 2+ FORMUL 4 HOH *21(H2 O) HELIX 1 AA1 GLY A 20 VAL A 36 1 17 HELIX 2 AA2 VAL A 36 TYR A 43 1 8 HELIX 3 AA3 ARG A 44 HIS A 49 1 6 HELIX 4 AA4 GLU A 54 PHE A 58 5 5 HELIX 5 AA5 GLY A 73 GLU A 83 1 11 HELIX 6 AA6 GLY A 114 VAL A 118 1 5 HELIX 7 AA7 ARG A 126 PHE A 131 5 6 HELIX 8 AA8 PHE A 135 ASN A 137 5 3 HELIX 9 AA9 GLN A 147 SER A 151 5 5 HELIX 10 AB1 ASP A 173 VAL A 185 1 13 HELIX 11 AB2 HIS A 195 LEU A 197 5 3 HELIX 12 AB3 SER A 200 PHE A 210 1 11 HELIX 13 AB4 GLN A 213 ASP A 215 5 3 HELIX 14 AB5 ASP A 228 ASN A 248 1 21 HELIX 15 AB6 ASN A 267 ASP A 269 5 3 HELIX 16 AB7 ASN A 270 GLU A 320 1 51 HELIX 17 AB8 GLY A 326 ARG A 337 1 12 HELIX 18 AB9 ARG A 337 GLU A 348 1 12 HELIX 19 AC1 GLU A 358 GLU A 367 1 10 HELIX 20 AC2 ASN A 368 TYR A 369 5 2 HELIX 21 AC3 ASP A 370 PHE A 374 5 5 HELIX 22 AC4 LYS A 378 ASN A 391 1 14 HELIX 23 AC5 ASN A 391 GLN A 402 1 12 SHEET 1 AA1 8 GLY A 110 PRO A 113 0 SHEET 2 AA1 8 PHE A 139 LEU A 144 -1 O GLN A 143 N GLY A 110 SHEET 3 AA1 8 PHE A 100 TYR A 105 1 N ALA A 102 O MET A 140 SHEET 4 AA1 8 SER A 153 ASP A 156 -1 O ILE A 154 N VAL A 103 SHEET 5 AA1 8 MET A 63 GLY A 68 1 N ILE A 64 O ILE A 155 SHEET 6 AA1 8 ARG A 187 ASP A 193 1 O ILE A 189 N LEU A 65 SHEET 7 AA1 8 ILE A 217 ASN A 222 1 O ASN A 222 N PHE A 192 SHEET 8 AA1 8 VAL A 255 ILE A 257 1 O TYR A 256 N LEU A 221 LINK OG1 THR A 75 MG MG A1001 1555 1555 2.58 LINK OD2 ASP A 156 MG MG A1001 1555 1555 2.27 LINK O2G AGS A1000 MG MG A1001 1555 1555 2.31 LINK O3B AGS A1000 MG MG A1001 1555 1555 2.77 SITE 1 AC1 16 SER A 71 THR A 72 GLY A 73 LYS A 74 SITE 2 AC1 16 THR A 75 THR A 76 ARG A 90 GLY A 92 SITE 3 AC1 16 PRO A 93 ASP A 98 ASP A 156 ASN A 222 SITE 4 AC1 16 LYS A 223 SER A 259 TRP A 261 MG A1001 SITE 1 AC2 4 LYS A 74 THR A 75 ASP A 156 AGS A1000 CRYST1 199.973 199.973 41.537 90.00 90.00 90.00 P 42 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.005001 0.000000 0.000000 0.00000 SCALE2 0.000000 0.005001 0.000000 0.00000 SCALE3 0.000000 0.000000 0.024075 0.00000