HEADER HYDROLASE 13-JAN-17 5MUM TITLE GLYCOSIDE HYDROLASE BACINT_00347 COMPND MOL_ID: 1; COMPND 2 MOLECULE: BACINT_00347; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BACTEROIDES INTESTINALIS DSM 17393; SOURCE 3 ORGANISM_TAXID: 471870; SOURCE 4 GENE: BACINT_00347; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS RHAMNOSIDASE, BACTEROIDES, BETA-PROPELLER, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR J.MUNOZ-MUNOZ,A.CARTMELL,N.TERRAPON,B.HENRISSAT,H.J.GILBERT REVDAT 4 17-JAN-24 5MUM 1 REMARK REVDAT 3 16-OCT-19 5MUM 1 REMARK REVDAT 2 17-MAY-17 5MUM 1 JRNL REVDAT 1 26-APR-17 5MUM 0 JRNL AUTH J.MUNOZ-MUNOZ,A.CARTMELL,N.TERRAPON,B.HENRISSAT,H.J.GILBERT JRNL TITL UNUSUAL ACTIVE SITE LOCATION AND CATALYTIC APPARATUS IN A JRNL TITL 2 GLYCOSIDE HYDROLASE FAMILY. JRNL REF PROC. NATL. ACAD. SCI. V. 114 4936 2017 JRNL REF 2 U.S.A. JRNL REFN ESSN 1091-6490 JRNL PMID 28396425 JRNL DOI 10.1073/PNAS.1701130114 REMARK 2 REMARK 2 RESOLUTION. 1.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0158 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 68.60 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 33250 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.154 REMARK 3 R VALUE (WORKING SET) : 0.152 REMARK 3 FREE R VALUE : 0.191 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1749 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.90 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.95 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2401 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.0 REMARK 3 BIN R VALUE (WORKING SET) : 0.1770 REMARK 3 BIN FREE R VALUE SET COUNT : 144 REMARK 3 BIN FREE R VALUE : 0.2130 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3183 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 28 REMARK 3 SOLVENT ATOMS : 314 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 13.64 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.77000 REMARK 3 B22 (A**2) : -0.84000 REMARK 3 B33 (A**2) : 1.61000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.127 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.121 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.075 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 2.495 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.957 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.932 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3355 ; 0.013 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 2887 ; 0.003 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4564 ; 1.554 ; 1.919 REMARK 3 BOND ANGLES OTHERS (DEGREES): 6672 ; 0.970 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 405 ; 7.526 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 176 ;32.896 ;23.409 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 510 ;13.091 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 26 ;19.135 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 470 ; 0.092 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3813 ; 0.008 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 757 ; 0.002 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1605 ; 1.036 ; 1.234 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1604 ; 1.033 ; 1.234 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2012 ; 1.712 ; 1.839 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 2013 ; 1.711 ; 1.840 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1750 ; 1.639 ; 1.404 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 1750 ; 1.639 ; 1.404 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 2552 ; 2.525 ; 2.024 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 3981 ; 4.980 ;15.179 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 3981 ; 4.981 ;15.175 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 5MUM COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 13-JAN-17. REMARK 100 THE DEPOSITION ID IS D_1200003047. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 15-MAY-15 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I03 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.979 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 255841 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.800 REMARK 200 RESOLUTION RANGE LOW (A) : 68.600 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.4 REMARK 200 DATA REDUNDANCY : 3.300 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 12.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 4IRT REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 43.38 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.17 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 20% PEG3350 AND 200 MM TRI-POTASSIUM REMARK 280 CITRATE, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 2 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 X,-Y,-Z REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 -X,-Y+1/2,Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 34.21900 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 59.34800 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 34.21900 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 59.34800 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1130 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 13940 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: 10.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 GLY A 2 REMARK 465 SER A 3 REMARK 465 SER A 4 REMARK 465 HIS A 5 REMARK 465 HIS A 6 REMARK 465 HIS A 7 REMARK 465 HIS A 8 REMARK 465 HIS A 9 REMARK 465 HIS A 10 REMARK 465 SER A 11 REMARK 465 SER A 12 REMARK 465 GLY A 13 REMARK 465 LEU A 14 REMARK 465 VAL A 15 REMARK 465 PRO A 16 REMARK 465 ARG A 17 REMARK 465 GLY A 18 REMARK 465 SER A 19 REMARK 465 HIS A 20 REMARK 465 MET A 21 REMARK 465 ALA A 22 REMARK 465 SER A 23 REMARK 465 GLN A 24 REMARK 465 GLN A 25 REMARK 465 GLY A 328 REMARK 465 GLY A 329 REMARK 465 GLY A 330 REMARK 465 THR A 331 REMARK 465 LYS A 332 REMARK 465 GLY A 412 REMARK 465 ASP A 413 REMARK 465 GLY A 414 REMARK 465 GLU A 415 REMARK 465 ARG A 416 REMARK 465 MET A 417 REMARK 465 ASN A 431 REMARK 465 ASN A 432 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLN A 79 CG CD OE1 NE2 REMARK 470 LYS A 92 CG CD CE NZ REMARK 470 LYS A 181 CE NZ REMARK 470 GLU A 182 CD OE1 OE2 REMARK 470 LYS A 184 CD CE NZ REMARK 470 ASP A 197 CG OD1 OD2 REMARK 470 GLN A 198 CG CD OE1 NE2 REMARK 470 LYS A 249 CD CE NZ REMARK 470 ASP A 252 OD1 OD2 REMARK 470 ASP A 298 CG OD1 OD2 REMARK 470 LYS A 327 CG CD CE NZ REMARK 470 GLN A 367 CG CD OE1 NE2 REMARK 470 THR A 371 CG2 REMARK 470 LYS A 373 CG CD CE NZ REMARK 470 THR A 375 CG2 REMARK 470 LYS A 399 CD CE NZ REMARK 470 VAL A 418 CG1 CG2 REMARK 470 GLU A 419 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 OD1 ASP A 78 OD1 ASP A 78 2535 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 27 NE - CZ - NH1 ANGL. DEV. = 3.3 DEGREES REMARK 500 ARG A 235 NE - CZ - NH2 ANGL. DEV. = -3.3 DEGREES REMARK 500 ARG A 293 NE - CZ - NH1 ANGL. DEV. = 4.0 DEGREES REMARK 500 ARG A 293 NE - CZ - NH2 ANGL. DEV. = -4.1 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 VAL A 31 -62.43 -107.22 REMARK 500 ASN A 96 48.57 -88.88 REMARK 500 HIS A 115 69.96 -150.75 REMARK 500 MET A 138 -69.37 -95.68 REMARK 500 TYR A 148 60.46 62.08 REMARK 500 THR A 222 -159.86 -119.09 REMARK 500 ASP A 230 162.87 71.31 REMARK 500 GLN A 275 72.93 66.46 REMARK 500 GLN A 275 72.44 62.90 REMARK 500 THR A 276 -126.12 -109.03 REMARK 500 THR A 276 -126.12 -109.98 REMARK 500 ASP A 385 -102.87 48.39 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 914 DISTANCE = 5.98 ANGSTROMS REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 1PE A 503 REMARK 610 1PE A 504 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 1PE A 503 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 1PE A 504 DBREF 5MUM A 24 432 UNP B3C613 B3C613_9BACE 21 429 SEQADV 5MUM MET A 1 UNP B3C613 INITIATING METHIONINE SEQADV 5MUM GLY A 2 UNP B3C613 EXPRESSION TAG SEQADV 5MUM SER A 3 UNP B3C613 EXPRESSION TAG SEQADV 5MUM SER A 4 UNP B3C613 EXPRESSION TAG SEQADV 5MUM HIS A 5 UNP B3C613 EXPRESSION TAG SEQADV 5MUM HIS A 6 UNP B3C613 EXPRESSION TAG SEQADV 5MUM HIS A 7 UNP B3C613 EXPRESSION TAG SEQADV 5MUM HIS A 8 UNP B3C613 EXPRESSION TAG SEQADV 5MUM HIS A 9 UNP B3C613 EXPRESSION TAG SEQADV 5MUM HIS A 10 UNP B3C613 EXPRESSION TAG SEQADV 5MUM SER A 11 UNP B3C613 EXPRESSION TAG SEQADV 5MUM SER A 12 UNP B3C613 EXPRESSION TAG SEQADV 5MUM GLY A 13 UNP B3C613 EXPRESSION TAG SEQADV 5MUM LEU A 14 UNP B3C613 EXPRESSION TAG SEQADV 5MUM VAL A 15 UNP B3C613 EXPRESSION TAG SEQADV 5MUM PRO A 16 UNP B3C613 EXPRESSION TAG SEQADV 5MUM ARG A 17 UNP B3C613 EXPRESSION TAG SEQADV 5MUM GLY A 18 UNP B3C613 EXPRESSION TAG SEQADV 5MUM SER A 19 UNP B3C613 EXPRESSION TAG SEQADV 5MUM HIS A 20 UNP B3C613 EXPRESSION TAG SEQADV 5MUM MET A 21 UNP B3C613 EXPRESSION TAG SEQADV 5MUM ALA A 22 UNP B3C613 EXPRESSION TAG SEQADV 5MUM SER A 23 UNP B3C613 EXPRESSION TAG SEQRES 1 A 432 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 A 432 LEU VAL PRO ARG GLY SER HIS MET ALA SER GLN GLN SER SEQRES 3 A 432 ARG LEU VAL GLU VAL GLY ASN GLY TYR SER GLN THR SER SEQRES 4 A 432 VAL ASN THR THR VAL PHE ARG ASN ASN SER LEU VAL THR SEQRES 5 A 432 GLN GLY ASP GLU GLN TYR ILE SER TYR TYR ASP GLY ASP SEQRES 6 A 432 GLY TYR LEU VAL LEU GLY LYS ARG LYS LEU ASN SER ASP SEQRES 7 A 432 GLN TRP THR LEU GLN ARG THR GLN TYR LYS GLY ASN VAL SEQRES 8 A 432 LYS ASP ALA HIS ASN ILE ILE SER MET MET LEU ASP GLY SEQRES 9 A 432 ASP GLY TYR LEU HIS LEU SER PHE ASP HIS HIS GLY HIS SEQRES 10 A 432 LYS LEU ASN TYR CYS ARG SER THR ALA PRO TYR THR LEU SEQRES 11 A 432 GLU LEU GLY ASP LYS GLU PRO MET THR GLY VAL ASP GLU SEQRES 12 A 432 GLY ASN VAL THR TYR PRO GLU PHE TYR PRO LEU ASN GLY SEQRES 13 A 432 GLY ASP LEU LEU PHE VAL TYR ARG SER GLY SER SER GLY SEQRES 14 A 432 ARG GLY ASN LEU VAL MET ASN ARG TYR SER VAL LYS GLU SEQRES 15 A 432 LYS LYS TRP TYR ARG VAL GLN ASP VAL LEU ILE ASP GLY SEQRES 16 A 432 GLU ASP GLN ARG ASN ALA TYR TRP GLN LEU TYR VAL ASP SEQRES 17 A 432 GLU GLN GLY THR ILE HIS LEU SER TRP VAL TRP ARG GLU SEQRES 18 A 432 THR TRP HIS VAL GLU THR ASN HIS ASP LEU CYS TYR ALA SEQRES 19 A 432 ARG SER TYR ASP ASN GLY VAL THR TRP TYR LYS ALA ASN SEQRES 20 A 432 GLY LYS LYS TYR ASP LEU PRO ILE ARG TYR ASN ASN ALA SEQRES 21 A 432 GLU TYR ALA CYS ARG ILE PRO GLN ASN SER GLU LEU ILE SEQRES 22 A 432 ASN GLN THR SER MET SER ALA ASP ALA SER GLY ASN PRO SEQRES 23 A 432 TYR ILE ALA THR TYR TRP ARG ASP PRO ASP SER ASP VAL SEQRES 24 A 432 PRO GLN TYR ARG ILE VAL TRP HIS ASP GLY GLN MET TRP SEQRES 25 A 432 GLN ASN ARG GLN VAL SER ASP ARG HIS THR PRO PHE SER SEQRES 26 A 432 LEU LYS GLY GLY GLY THR LYS MET ILE PRO ILE ALA ARG SEQRES 27 A 432 PRO ARG ILE VAL VAL ASP GLY GLY GLU ILE PHE TYR ILE SEQRES 28 A 432 PHE ARG ASP GLU GLU ARG GLY SER ARG VAL SER MET ALA SEQRES 29 A 432 HIS ALA GLN ALA VAL GLY THR GLY LYS TRP THR ILE THR SEQRES 30 A 432 ASP LEU THR ASP PHE ALA VAL ASP ALA TRP GLU PRO SER SEQRES 31 A 432 HIS ASP THR GLU LEU TRP LYS GLN LYS ARG ARG LEU HIS SEQRES 32 A 432 LEU PHE VAL GLN HIS THR LYS GLN GLY ASP GLY GLU ARG SEQRES 33 A 432 MET VAL GLU PHE ALA PRO GLN PRO VAL TYR VAL LEU GLU SEQRES 34 A 432 VAL ASN ASN HET EDO A 501 4 HET EDO A 502 4 HET 1PE A 503 11 HET 1PE A 504 9 HETNAM EDO 1,2-ETHANEDIOL HETNAM 1PE PENTAETHYLENE GLYCOL HETSYN EDO ETHYLENE GLYCOL HETSYN 1PE PEG400 FORMUL 2 EDO 2(C2 H6 O2) FORMUL 4 1PE 2(C10 H22 O6) FORMUL 6 HOH *314(H2 O) HELIX 1 AA1 ASN A 155 GLY A 157 5 3 HELIX 2 AA2 HIS A 224 GLU A 226 5 3 HELIX 3 AA3 ASP A 354 GLY A 358 5 5 HELIX 4 AA4 ASP A 392 ARG A 400 1 9 SHEET 1 AA1 3 ARG A 27 GLY A 34 0 SHEET 2 AA1 3 GLN A 423 GLU A 429 -1 O VAL A 427 N VAL A 29 SHEET 3 AA1 3 HIS A 403 GLN A 407 -1 N VAL A 406 O TYR A 426 SHEET 1 AA2 4 LEU A 50 GLN A 53 0 SHEET 2 AA2 4 GLU A 56 TYR A 62 -1 O TYR A 58 N VAL A 51 SHEET 3 AA2 4 TYR A 67 LYS A 74 -1 O VAL A 69 N TYR A 61 SHEET 4 AA2 4 THR A 81 LYS A 88 -1 O GLN A 83 N LEU A 70 SHEET 1 AA3 3 ILE A 98 LEU A 102 0 SHEET 2 AA3 3 LEU A 108 PHE A 112 -1 O HIS A 109 N MET A 101 SHEET 3 AA3 3 TYR A 121 ARG A 123 -1 O CYS A 122 N LEU A 110 SHEET 1 AA4 4 VAL A 146 PRO A 153 0 SHEET 2 AA4 4 LEU A 159 SER A 165 -1 O LEU A 160 N TYR A 152 SHEET 3 AA4 4 ASN A 172 SER A 179 -1 O ASN A 172 N SER A 165 SHEET 4 AA4 4 LYS A 184 GLN A 189 -1 O VAL A 188 N MET A 175 SHEET 1 AA5 4 ASN A 200 VAL A 207 0 SHEET 2 AA5 4 ILE A 213 ARG A 220 -1 O ARG A 220 N ASN A 200 SHEET 3 AA5 4 ASN A 228 SER A 236 -1 O SER A 236 N ILE A 213 SHEET 4 AA5 4 GLU A 261 CYS A 264 -1 O ALA A 263 N LEU A 231 SHEET 1 AA6 4 SER A 277 ALA A 280 0 SHEET 2 AA6 4 PRO A 286 TRP A 292 -1 O TYR A 287 N SER A 279 SHEET 3 AA6 4 GLN A 301 HIS A 307 -1 O VAL A 305 N ILE A 288 SHEET 4 AA6 4 TRP A 312 GLN A 316 -1 O GLN A 313 N TRP A 306 SHEET 1 AA7 4 ARG A 340 ASP A 344 0 SHEET 2 AA7 4 GLU A 347 PHE A 352 -1 O ILE A 351 N ARG A 340 SHEET 3 AA7 4 SER A 362 ALA A 366 -1 O ALA A 364 N TYR A 350 SHEET 4 AA7 4 THR A 375 ASP A 378 -1 O THR A 377 N MET A 363 CISPEP 1 ASN A 47 ASN A 48 0 5.03 CISPEP 2 LEU A 253 PRO A 254 0 -3.24 SITE 1 AC1 8 GLN A 204 VAL A 218 LEU A 231 LEU A 272 SITE 2 AC1 8 ILE A 273 THR A 276 THR A 290 HOH A 605 SITE 1 AC2 10 ASN A 41 THR A 42 THR A 43 ARG A 46 SITE 2 AC2 10 SER A 49 TRP A 387 GLU A 388 PRO A 389 SITE 3 AC2 10 SER A 390 PHE A 405 SITE 1 AC3 9 ASP A 238 ASN A 239 CYS A 264 ARG A 265 SITE 2 AC3 9 PRO A 267 ASN A 314 HOH A 741 HOH A 776 SITE 3 AC3 9 HOH A 782 SITE 1 AC4 10 SER A 39 THR A 42 THR A 43 PHE A 45 SITE 2 AC4 10 TYR A 148 GLN A 275 ARG A 338 GLU A 388 SITE 3 AC4 10 GLN A 411 HOH A 613 CRYST1 53.313 68.438 118.696 90.00 90.00 90.00 P 2 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.018757 0.000000 0.000000 0.00000 SCALE2 0.000000 0.014612 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008425 0.00000