HEADER VIRAL PROTEIN 13-JAN-17 5MUP TITLE STRUCTURE OF DEFORMED WING VIRUS, A HONEYBEE PATHOGEN COMPND MOL_ID: 1; COMPND 2 MOLECULE: VP1; COMPND 3 CHAIN: A; COMPND 4 MOL_ID: 2; COMPND 5 MOLECULE: VP2; COMPND 6 CHAIN: B; COMPND 7 MOL_ID: 3; COMPND 8 MOLECULE: VP3; COMPND 9 CHAIN: C SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: DEFORMED WING VIRUS; SOURCE 3 ORGANISM_TAXID: 198112; SOURCE 4 MOL_ID: 2; SOURCE 5 ORGANISM_SCIENTIFIC: DEFORMED WING VIRUS; SOURCE 6 ORGANISM_TAXID: 198112; SOURCE 7 MOL_ID: 3; SOURCE 8 ORGANISM_SCIENTIFIC: DEFORMED WING VIRUS; SOURCE 9 ORGANISM_TAXID: 198112 KEYWDS DEFORMED WING VIRUS, PICORNAVIRALES, IFLAVIRIDAE, IFLAVIRUS, VIRAL KEYWDS 2 PROTEIN, BEE PATHOGEN EXPDTA ELECTRON MICROSCOPY AUTHOR K.SKUBNIK,J.NOVACEK,T.FUZIK,A.PRIDAL,R.PAXTON,P.PLEVKA REVDAT 3 24-OCT-18 5MUP 1 REMARK LINK REVDAT 2 02-AUG-17 5MUP 1 REVDAT 1 05-APR-17 5MUP 0 JRNL AUTH K.SKUBNIK,J.NOVACEK,T.FUZIK,A.PRIDAL,R.J.PAXTON,P.PLEVKA JRNL TITL STRUCTURE OF DEFORMED WING VIRUS, A MAJOR HONEY BEE JRNL TITL 2 PATHOGEN. JRNL REF PROC. NATL. ACAD. SCI. V. 114 3210 2017 JRNL REF 2 U.S.A. JRNL REFN ESSN 1091-6490 JRNL PMID 28270616 JRNL DOI 10.1073/PNAS.1615695114 REMARK 2 REMARK 2 RESOLUTION. 3.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 SOFTWARE PACKAGES : EMAN, EPU, GCTF, COOT, PHENIX, RELION, REMARK 3 RELION, RELION REMARK 3 RECONSTRUCTION SCHEMA : FOURIER SPACE REMARK 3 REMARK 3 EM MAP-MODEL FITTING AND REFINEMENT REMARK 3 PDB ENTRY : NULL REMARK 3 REFINEMENT SPACE : REAL REMARK 3 REFINEMENT PROTOCOL : OTHER REMARK 3 REFINEMENT TARGET : R-FACTOR REMARK 3 OVERALL ANISOTROPIC B VALUE : NULL REMARK 3 REMARK 3 FITTING PROCEDURE : NULL REMARK 3 REMARK 3 EM IMAGE RECONSTRUCTION STATISTICS REMARK 3 NOMINAL PIXEL SIZE (ANGSTROMS) : NULL REMARK 3 ACTUAL PIXEL SIZE (ANGSTROMS) : NULL REMARK 3 EFFECTIVE RESOLUTION (ANGSTROMS) : 3.800 REMARK 3 NUMBER OF PARTICLES : 879 REMARK 3 CTF CORRECTION METHOD : PHASE FLIPPING AND AMPLITUDE REMARK 3 CORRECTION REMARK 3 REMARK 3 EM RECONSTRUCTION MAGNIFICATION CALIBRATION: NULL REMARK 3 REMARK 3 OTHER DETAILS: NULL REMARK 4 REMARK 4 5MUP COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 13-JAN-17. REMARK 100 THE DEPOSITION ID IS D_1200003043. REMARK 245 REMARK 245 EXPERIMENTAL DETAILS REMARK 245 RECONSTRUCTION METHOD : SINGLE PARTICLE REMARK 245 SPECIMEN TYPE : NULL REMARK 245 REMARK 245 ELECTRON MICROSCOPE SAMPLE REMARK 245 SAMPLE TYPE : PARTICLE REMARK 245 PARTICLE TYPE : POINT REMARK 245 NAME OF SAMPLE : DEFORMED WING VIRUS REMARK 245 SAMPLE CONCENTRATION (MG ML-1) : 2.50 REMARK 245 SAMPLE SUPPORT DETAILS : NULL REMARK 245 SAMPLE VITRIFICATION DETAILS : NULL REMARK 245 SAMPLE BUFFER : NULL REMARK 245 PH : 7.40 REMARK 245 SAMPLE DETAILS : VIRUS WAS PURIFIED FROM REMARK 245 HONEYBEE PUPAE REMARK 245 REMARK 245 DATA ACQUISITION REMARK 245 DATE OF EXPERIMENT : NULL REMARK 245 NUMBER OF MICROGRAPHS-IMAGES : NULL REMARK 245 TEMPERATURE (KELVIN) : NULL REMARK 245 MICROSCOPE MODEL : FEI TITAN KRIOS REMARK 245 DETECTOR TYPE : FEI FALCON II (4K X 4K) REMARK 245 MINIMUM DEFOCUS (NM) : 1000.00 REMARK 245 MAXIMUM DEFOCUS (NM) : 4000.00 REMARK 245 MINIMUM TILT ANGLE (DEGREES) : NULL REMARK 245 MAXIMUM TILT ANGLE (DEGREES) : NULL REMARK 245 NOMINAL CS : 2.70 REMARK 245 IMAGING MODE : BRIGHT FIELD REMARK 245 ELECTRON DOSE (ELECTRONS NM**-2) : 21.00 REMARK 245 ILLUMINATION MODE : FLOOD BEAM REMARK 245 NOMINAL MAGNIFICATION : 75000 REMARK 245 CALIBRATED MAGNIFICATION : 74235 REMARK 245 SOURCE : FIELD EMISSION GUN REMARK 245 ACCELERATION VOLTAGE (KV) : 300 REMARK 245 IMAGING DETAILS : NULL REMARK 247 REMARK 247 ELECTRON MICROSCOPY REMARK 247 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM ELECTRON REMARK 247 MICROSCOPY DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE REMARK 247 THAT CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES REMARK 247 ON THESE RECORDS ARE MEANINGLESS EXCEPT FOR THE CALCULATION REMARK 247 OF THE STRUCTURE FACTORS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 THE ASSEMBLY REPRESENTED IN THIS ENTRY HAS REGULAR REMARK 300 ICOSAHEDRAL POINT SYMMETRY (SCHOENFLIES SYMBOL = I). REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.809017 -0.500000 0.309017 0.00000 REMARK 350 BIOMT2 2 0.500000 0.309017 -0.809017 0.00000 REMARK 350 BIOMT3 2 0.309017 0.809017 0.500000 0.00000 REMARK 350 BIOMT1 3 0.500000 -0.309017 0.809017 0.00000 REMARK 350 BIOMT2 3 0.309017 -0.809017 -0.500000 0.00000 REMARK 350 BIOMT3 3 0.809017 0.500000 -0.309017 0.00000 REMARK 350 BIOMT1 4 0.500000 0.309017 0.809017 0.00000 REMARK 350 BIOMT2 4 -0.309017 -0.809017 0.500000 0.00000 REMARK 350 BIOMT3 4 0.809017 -0.500000 -0.309017 0.00000 REMARK 350 BIOMT1 5 0.809017 0.500000 0.309017 0.00000 REMARK 350 BIOMT2 5 -0.500000 0.309017 0.809017 0.00000 REMARK 350 BIOMT3 5 0.309017 -0.809017 0.500000 0.00000 REMARK 350 BIOMT1 6 -0.500000 0.309017 0.809017 0.00000 REMARK 350 BIOMT2 6 0.309017 -0.809017 0.500000 0.00000 REMARK 350 BIOMT3 6 0.809017 0.500000 0.309017 0.00000 REMARK 350 BIOMT1 7 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT2 7 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT3 7 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT1 8 0.500000 0.309017 -0.809017 0.00000 REMARK 350 BIOMT2 8 0.309017 0.809017 0.500000 0.00000 REMARK 350 BIOMT3 8 0.809017 -0.500000 0.309017 0.00000 REMARK 350 BIOMT1 9 0.309017 -0.809017 -0.500000 0.00000 REMARK 350 BIOMT2 9 0.809017 0.500000 -0.309017 0.00000 REMARK 350 BIOMT3 9 0.500000 -0.309017 0.809017 0.00000 REMARK 350 BIOMT1 10 -0.309017 -0.809017 0.500000 0.00000 REMARK 350 BIOMT2 10 0.809017 -0.500000 -0.309017 0.00000 REMARK 350 BIOMT3 10 0.500000 0.309017 0.809017 0.00000 REMARK 350 BIOMT1 11 0.309017 -0.809017 -0.500000 0.00000 REMARK 350 BIOMT2 11 -0.809017 -0.500000 0.309017 0.00000 REMARK 350 BIOMT3 11 -0.500000 0.309017 -0.809017 0.00000 REMARK 350 BIOMT1 12 -0.309017 -0.809017 0.500000 0.00000 REMARK 350 BIOMT2 12 -0.809017 0.500000 0.309017 0.00000 REMARK 350 BIOMT3 12 -0.500000 -0.309017 -0.809017 0.00000 REMARK 350 BIOMT1 13 -0.500000 0.309017 0.809017 0.00000 REMARK 350 BIOMT2 13 -0.309017 0.809017 -0.500000 0.00000 REMARK 350 BIOMT3 13 -0.809017 -0.500000 -0.309017 0.00000 REMARK 350 BIOMT1 14 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT2 14 0.000000 0.000000 -1.000000 0.00000 REMARK 350 BIOMT3 14 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT1 15 0.500000 0.309017 -0.809017 0.00000 REMARK 350 BIOMT2 15 -0.309017 -0.809017 -0.500000 0.00000 REMARK 350 BIOMT3 15 -0.809017 0.500000 -0.309017 0.00000 REMARK 350 BIOMT1 16 -0.809017 0.500000 -0.309017 0.00000 REMARK 350 BIOMT2 16 0.500000 0.309017 -0.809017 0.00000 REMARK 350 BIOMT3 16 -0.309017 -0.809017 -0.500000 0.00000 REMARK 350 BIOMT1 17 -0.500000 0.309017 -0.809017 0.00000 REMARK 350 BIOMT2 17 0.309017 -0.809017 -0.500000 0.00000 REMARK 350 BIOMT3 17 -0.809017 -0.500000 0.309017 0.00000 REMARK 350 BIOMT1 18 -0.500000 -0.309017 -0.809017 0.00000 REMARK 350 BIOMT2 18 -0.309017 -0.809017 0.500000 0.00000 REMARK 350 BIOMT3 18 -0.809017 0.500000 0.309017 0.00000 REMARK 350 BIOMT1 19 -0.809017 -0.500000 -0.309017 0.00000 REMARK 350 BIOMT2 19 -0.500000 0.309017 0.809017 0.00000 REMARK 350 BIOMT3 19 -0.309017 0.809017 -0.500000 0.00000 REMARK 350 BIOMT1 20 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 20 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 20 0.000000 0.000000 -1.000000 0.00000 REMARK 350 BIOMT1 21 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT2 21 0.000000 0.000000 -1.000000 0.00000 REMARK 350 BIOMT3 21 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT1 22 -0.500000 -0.309017 0.809017 0.00000 REMARK 350 BIOMT2 22 -0.309017 -0.809017 -0.500000 0.00000 REMARK 350 BIOMT3 22 0.809017 -0.500000 0.309017 0.00000 REMARK 350 BIOMT1 23 -0.309017 0.809017 0.500000 0.00000 REMARK 350 BIOMT2 23 -0.809017 -0.500000 0.309017 0.00000 REMARK 350 BIOMT3 23 0.500000 -0.309017 0.809017 0.00000 REMARK 350 BIOMT1 24 0.309017 0.809017 -0.500000 0.00000 REMARK 350 BIOMT2 24 -0.809017 0.500000 0.309017 0.00000 REMARK 350 BIOMT3 24 0.500000 0.309017 0.809017 0.00000 REMARK 350 BIOMT1 25 0.500000 -0.309017 -0.809017 0.00000 REMARK 350 BIOMT2 25 -0.309017 0.809017 -0.500000 0.00000 REMARK 350 BIOMT3 25 0.809017 0.500000 0.309017 0.00000 REMARK 350 BIOMT1 26 -0.309017 0.809017 -0.500000 0.00000 REMARK 350 BIOMT2 26 -0.809017 -0.500000 -0.309017 0.00000 REMARK 350 BIOMT3 26 -0.500000 0.309017 0.809017 0.00000 REMARK 350 BIOMT1 27 0.000000 0.000000 -1.000000 0.00000 REMARK 350 BIOMT2 27 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 27 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT1 28 -0.309017 -0.809017 -0.500000 0.00000 REMARK 350 BIOMT2 28 -0.809017 0.500000 -0.309017 0.00000 REMARK 350 BIOMT3 28 0.500000 0.309017 -0.809017 0.00000 REMARK 350 BIOMT1 29 -0.809017 -0.500000 0.309017 0.00000 REMARK 350 BIOMT2 29 -0.500000 0.309017 -0.809017 0.00000 REMARK 350 BIOMT3 29 0.309017 -0.809017 -0.500000 0.00000 REMARK 350 BIOMT1 30 -0.809017 0.500000 0.309017 0.00000 REMARK 350 BIOMT2 30 -0.500000 -0.309017 -0.809017 0.00000 REMARK 350 BIOMT3 30 -0.309017 -0.809017 0.500000 0.00000 REMARK 350 BIOMT1 31 0.809017 0.500000 -0.309017 0.00000 REMARK 350 BIOMT2 31 0.500000 -0.309017 0.809017 0.00000 REMARK 350 BIOMT3 31 0.309017 -0.809017 -0.500000 0.00000 REMARK 350 BIOMT1 32 0.809017 -0.500000 -0.309017 0.00000 REMARK 350 BIOMT2 32 0.500000 0.309017 0.809017 0.00000 REMARK 350 BIOMT3 32 -0.309017 -0.809017 0.500000 0.00000 REMARK 350 BIOMT1 33 0.309017 -0.809017 0.500000 0.00000 REMARK 350 BIOMT2 33 0.809017 0.500000 0.309017 0.00000 REMARK 350 BIOMT3 33 -0.500000 0.309017 0.809017 0.00000 REMARK 350 BIOMT1 34 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT2 34 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 34 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT1 35 0.309017 0.809017 0.500000 0.00000 REMARK 350 BIOMT2 35 0.809017 -0.500000 0.309017 0.00000 REMARK 350 BIOMT3 35 0.500000 0.309017 -0.809017 0.00000 REMARK 350 BIOMT1 36 -0.500000 -0.309017 0.809017 0.00000 REMARK 350 BIOMT2 36 0.309017 0.809017 0.500000 0.00000 REMARK 350 BIOMT3 36 -0.809017 0.500000 -0.309017 0.00000 REMARK 350 BIOMT1 37 -0.309017 0.809017 0.500000 0.00000 REMARK 350 BIOMT2 37 0.809017 0.500000 -0.309017 0.00000 REMARK 350 BIOMT3 37 -0.500000 0.309017 -0.809017 0.00000 REMARK 350 BIOMT1 38 0.309017 0.809017 -0.500000 0.00000 REMARK 350 BIOMT2 38 0.809017 -0.500000 -0.309017 0.00000 REMARK 350 BIOMT3 38 -0.500000 -0.309017 -0.809017 0.00000 REMARK 350 BIOMT1 39 0.500000 -0.309017 -0.809017 0.00000 REMARK 350 BIOMT2 39 0.309017 -0.809017 0.500000 0.00000 REMARK 350 BIOMT3 39 -0.809017 -0.500000 -0.309017 0.00000 REMARK 350 BIOMT1 40 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT2 40 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT3 40 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT1 41 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT2 41 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 41 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT1 42 0.309017 0.809017 0.500000 0.00000 REMARK 350 BIOMT2 42 -0.809017 0.500000 -0.309017 0.00000 REMARK 350 BIOMT3 42 -0.500000 -0.309017 0.809017 0.00000 REMARK 350 BIOMT1 43 0.809017 0.500000 -0.309017 0.00000 REMARK 350 BIOMT2 43 -0.500000 0.309017 -0.809017 0.00000 REMARK 350 BIOMT3 43 -0.309017 0.809017 0.500000 0.00000 REMARK 350 BIOMT1 44 0.809017 -0.500000 -0.309017 0.00000 REMARK 350 BIOMT2 44 -0.500000 -0.309017 -0.809017 0.00000 REMARK 350 BIOMT3 44 0.309017 0.809017 -0.500000 0.00000 REMARK 350 BIOMT1 45 0.309017 -0.809017 0.500000 0.00000 REMARK 350 BIOMT2 45 -0.809017 -0.500000 -0.309017 0.00000 REMARK 350 BIOMT3 45 0.500000 -0.309017 -0.809017 0.00000 REMARK 350 BIOMT1 46 0.809017 0.500000 0.309017 0.00000 REMARK 350 BIOMT2 46 0.500000 -0.309017 -0.809017 0.00000 REMARK 350 BIOMT3 46 -0.309017 0.809017 -0.500000 0.00000 REMARK 350 BIOMT1 47 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 47 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 47 0.000000 0.000000 -1.000000 0.00000 REMARK 350 BIOMT1 48 0.809017 -0.500000 0.309017 0.00000 REMARK 350 BIOMT2 48 -0.500000 -0.309017 0.809017 0.00000 REMARK 350 BIOMT3 48 -0.309017 -0.809017 -0.500000 0.00000 REMARK 350 BIOMT1 49 0.500000 -0.309017 0.809017 0.00000 REMARK 350 BIOMT2 49 -0.309017 0.809017 0.500000 0.00000 REMARK 350 BIOMT3 49 -0.809017 -0.500000 0.309017 0.00000 REMARK 350 BIOMT1 50 0.500000 0.309017 0.809017 0.00000 REMARK 350 BIOMT2 50 0.309017 0.809017 -0.500000 0.00000 REMARK 350 BIOMT3 50 -0.809017 0.500000 0.309017 0.00000 REMARK 350 BIOMT1 51 -0.500000 0.309017 -0.809017 0.00000 REMARK 350 BIOMT2 51 -0.309017 0.809017 0.500000 0.00000 REMARK 350 BIOMT3 51 0.809017 0.500000 -0.309017 0.00000 REMARK 350 BIOMT1 52 -0.500000 -0.309017 -0.809017 0.00000 REMARK 350 BIOMT2 52 0.309017 0.809017 -0.500000 0.00000 REMARK 350 BIOMT3 52 0.809017 -0.500000 -0.309017 0.00000 REMARK 350 BIOMT1 53 -0.809017 -0.500000 -0.309017 0.00000 REMARK 350 BIOMT2 53 0.500000 -0.309017 -0.809017 0.00000 REMARK 350 BIOMT3 53 0.309017 -0.809017 0.500000 0.00000 REMARK 350 BIOMT1 54 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 54 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 54 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 55 -0.809017 0.500000 -0.309017 0.00000 REMARK 350 BIOMT2 55 -0.500000 -0.309017 0.809017 0.00000 REMARK 350 BIOMT3 55 0.309017 0.809017 0.500000 0.00000 REMARK 350 BIOMT1 56 -0.309017 -0.809017 -0.500000 0.00000 REMARK 350 BIOMT2 56 0.809017 -0.500000 0.309017 0.00000 REMARK 350 BIOMT3 56 -0.500000 -0.309017 0.809017 0.00000 REMARK 350 BIOMT1 57 -0.809017 -0.500000 0.309017 0.00000 REMARK 350 BIOMT2 57 0.500000 -0.309017 0.809017 0.00000 REMARK 350 BIOMT3 57 -0.309017 0.809017 0.500000 0.00000 REMARK 350 BIOMT1 58 -0.809017 0.500000 0.309017 0.00000 REMARK 350 BIOMT2 58 0.500000 0.309017 0.809017 0.00000 REMARK 350 BIOMT3 58 0.309017 0.809017 -0.500000 0.00000 REMARK 350 BIOMT1 59 -0.309017 0.809017 -0.500000 0.00000 REMARK 350 BIOMT2 59 0.809017 0.500000 0.309017 0.00000 REMARK 350 BIOMT3 59 0.500000 -0.309017 -0.809017 0.00000 REMARK 350 BIOMT1 60 0.000000 0.000000 -1.000000 0.00000 REMARK 350 BIOMT2 60 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 60 0.000000 -1.000000 0.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 1 REMARK 465 THR A 52 REMARK 465 ASP A 53 REMARK 465 LYS A 54 REMARK 465 CYS A 141 REMARK 465 ASP A 142 REMARK 465 ALA A 143 REMARK 465 VAL A 144 REMARK 465 SER A 145 REMARK 465 THR A 146 REMARK 465 ALA A 250 REMARK 465 PRO A 251 REMARK 465 VAL A 252 REMARK 465 VAL A 253 REMARK 465 ARG A 254 REMARK 465 ALA A 255 REMARK 465 VAL A 256 REMARK 465 PRO A 257 REMARK 465 GLU A 258 REMARK 465 ARG B 250 REMARK 465 ALA B 251 REMARK 465 LYS B 252 REMARK 465 PRO B 253 REMARK 465 GLU B 254 REMARK 465 ASP C 1 REMARK 465 LEU C 196 REMARK 465 PRO C 197 REMARK 465 SER C 198 REMARK 465 ASN C 258 REMARK 465 ASP C 259 REMARK 465 GLU C 260 REMARK 465 GLU C 261 REMARK 465 ASN C 280 REMARK 465 ASN C 281 REMARK 465 SER C 282 REMARK 465 ASN C 283 REMARK 465 VAL C 304 REMARK 465 PRO C 305 REMARK 465 ARG C 306 REMARK 465 GLY C 307 REMARK 465 GLU C 308 REMARK 465 LEU C 309 REMARK 465 GLY C 317 REMARK 465 LYS C 318 REMARK 465 GLY C 338 REMARK 465 THR C 345 REMARK 465 TYR C 346 REMARK 465 ASN C 347 REMARK 465 ALA C 348 REMARK 465 GLU C 349 REMARK 465 ARG C 350 REMARK 465 ALA C 351 REMARK 465 ARG C 352 REMARK 465 GLN C 353 REMARK 465 LEU C 354 REMARK 465 ALA C 355 REMARK 465 GLN C 356 REMARK 465 HIS C 357 REMARK 465 LEU C 358 REMARK 465 TYR C 359 REMARK 465 GLY C 360 REMARK 465 GLY C 361 REMARK 465 GLY C 362 REMARK 465 SER C 363 REMARK 465 LEU C 364 REMARK 465 THR C 365 REMARK 465 ASP C 366 REMARK 465 VAL C 390 REMARK 465 LEU C 398 REMARK 465 ALA C 399 REMARK 465 THR C 400 REMARK 465 GLN C 401 REMARK 465 ARG C 402 REMARK 465 ALA C 403 REMARK 465 HIS C 404 REMARK 465 ILE C 405 REMARK 465 GLN C 406 REMARK 465 ASP C 407 REMARK 465 PHE C 408 REMARK 465 GLU C 409 REMARK 465 PHE C 410 REMARK 465 ILE C 411 REMARK 465 GLU C 412 REMARK 465 ALA C 413 REMARK 465 ILE C 414 REMARK 465 PRO C 415 REMARK 465 GLU C 416 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OE1 GLU C 392 CG MET C 394 0.96 REMARK 500 N ARG C 313 OE2 GLU C 392 1.19 REMARK 500 O ARG C 313 CB GLU C 392 1.29 REMARK 500 O ASP A 55 ND1 HIS A 58 1.68 REMARK 500 C LEU C 312 OE2 GLU C 392 1.79 REMARK 500 O TYR C 262 N TRP C 391 1.87 REMARK 500 CD GLU C 392 CG MET C 394 2.04 REMARK 500 O ASP A 55 CE1 HIS A 58 2.05 REMARK 500 N ARG C 313 CD GLU C 392 2.09 REMARK 500 OD1 ASP A 11 OE1 GLU C 177 2.11 REMARK 500 OD2 ASP A 11 OE1 GLU C 177 2.13 REMARK 500 CG ASP A 11 OE1 GLU C 177 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 89 -15.68 70.27 REMARK 500 TYR A 108 -52.08 -123.89 REMARK 500 TYR A 175 79.92 -102.91 REMARK 500 ALA A 177 46.59 -93.76 REMARK 500 VAL A 197 -60.98 -122.04 REMARK 500 ASP A 229 -11.78 70.61 REMARK 500 SER A 234 -66.71 -94.67 REMARK 500 ASP B 19 -161.72 -125.54 REMARK 500 ASN B 21 23.20 -145.97 REMARK 500 THR B 47 31.42 -143.37 REMARK 500 ASP B 77 75.36 -106.14 REMARK 500 ASN B 233 54.64 -96.88 REMARK 500 HIS C 11 48.62 -144.94 REMARK 500 PHE C 12 -164.54 -119.40 REMARK 500 ASN C 25 61.39 -103.56 REMARK 500 TYR C 141 115.18 -162.82 REMARK 500 SER C 161 -166.56 -79.76 REMARK 500 GLN C 169 -57.58 -120.94 REMARK 500 GLU C 170 -53.02 -120.66 REMARK 500 CYS C 239 -59.27 -122.87 REMARK 500 REMARK 500 REMARK: NULL REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 U5P C 501 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: EMD-3570 RELATED DB: EMDB REMARK 900 STRUCTURE OF DEFORMED WING VIRUS, A HONEYBEE PATHOGEN DBREF 5MUP A 1 258 UNP L0CTV4 L0CTV4_9VIRU 902 1159 DBREF 5MUP B 1 254 UNP E0YTW0 E0YTW0_9VIRU 116 368 DBREF 5MUP C 1 416 UNP Q7TG18 Q7TG18_9VIRU 486 901 SEQRES 1 A 258 GLY GLU GLU SER ARG ASN THR THR VAL LEU ASP THR THR SEQRES 2 A 258 THR THR LEU GLN SER SER GLY PHE GLY ARG ALA PHE PHE SEQRES 3 A 258 GLY GLU ALA PHE ASN ASP LEU LYS THR LEU MET ARG ARG SEQRES 4 A 258 TYR GLN LEU TYR GLY GLN LEU LEU LEU SER VAL THR THR SEQRES 5 A 258 ASP LYS ASP ILE ASP HIS CYS MET PHE THR PHE PRO CYS SEQRES 6 A 258 LEU PRO GLN GLY LEU ALA LEU ASP ILE GLY SER ALA GLY SEQRES 7 A 258 SER PRO HIS GLU ILE PHE ASN ARG CYS ARG ASP GLY ILE SEQRES 8 A 258 ILE PRO LEU ILE ALA SER GLY TYR ARG PHE TYR ARG GLY SEQRES 9 A 258 ASP LEU ARG TYR LYS ILE VAL PHE PRO SER ASN VAL ASN SEQRES 10 A 258 SER ASN ILE TRP VAL GLN HIS ARG PRO ASP ARG ARG LEU SEQRES 11 A 258 GLU GLY TRP SER ALA ALA LYS ILE VAL ASN CYS ASP ALA SEQRES 12 A 258 VAL SER THR GLY GLN GLY VAL TYR ASN HIS GLY TYR ALA SEQRES 13 A 258 SER HIS ILE GLN ILE THR ARG VAL ASN ASN VAL ILE GLU SEQRES 14 A 258 LEU GLU VAL PRO PHE TYR ASN ALA THR CYS TYR ASN TYR SEQRES 15 A 258 LEU GLN ALA PHE ASN ALA SER SER ALA ALA SER SER TYR SEQRES 16 A 258 ALA VAL SER LEU GLY GLU ILE SER VAL GLY PHE GLN ALA SEQRES 17 A 258 THR SER ASP ASP ILE ALA SER ILE VAL ASN LYS PRO VAL SEQRES 18 A 258 THR ILE TYR TYR SER ILE GLY ASP GLY MET GLN PHE SER SEQRES 19 A 258 GLN TRP VAL GLY TYR GLN PRO MET MET ILE LEU ASP GLN SEQRES 20 A 258 LEU PRO ALA PRO VAL VAL ARG ALA VAL PRO GLU SEQRES 1 B 253 MET ASP ASN PRO ASN PRO GLY PRO ASP GLY GLU GLY GLU SEQRES 2 B 253 VAL GLU LEU GLU LYS ASP SER ASN VAL VAL LEU THR THR SEQRES 3 B 253 GLN ARG ASP PRO SER THR SER ILE PRO ALA PRO VAL SER SEQRES 4 B 253 VAL LYS TRP SER ARG TRP THR SER ASN ASP VAL VAL ASP SEQRES 5 B 253 ASP TYR ALA THR ILE THR SER ARG TRP TYR GLN ILE ALA SEQRES 6 B 253 GLU PHE VAL TRP SER LYS ASP ASP PRO PHE ASP LYS GLU SEQRES 7 B 253 LEU ALA ARG LEU ILE LEU PRO ARG ALA LEU LEU SER SER SEQRES 8 B 253 ILE GLU ALA ASN SER ASP ALA ILE CYS ASP VAL PRO ASN SEQRES 9 B 253 THR ILE PRO PHE LYS VAL HIS ALA TYR TRP ARG GLY ASP SEQRES 10 B 253 MET GLU VAL ARG VAL GLN ILE ASN SER ASN LYS PHE GLN SEQRES 11 B 253 VAL GLY GLN LEU GLN ALA THR TRP TYR TYR SER ASP HIS SEQRES 12 B 253 GLU ASN LEU ASN ILE SER SER LYS ARG SER VAL TYR GLY SEQRES 13 B 253 PHE SER GLN MET ASP HIS ALA LEU ILE SER ALA SER ALA SEQRES 14 B 253 SER ASN GLU ALA LYS LEU VAL ILE PRO PHE LYS HIS VAL SEQRES 15 B 253 TYR PRO PHE LEU PRO THR ARG ILE VAL PRO ASP TRP THR SEQRES 16 B 253 THR GLY ILE LEU ASP MET GLY ALA LEU ASN ILE ARG VAL SEQRES 17 B 253 ILE ALA PRO LEU ARG MET SER ALA THR GLY PRO THR THR SEQRES 18 B 253 CYS ASN VAL VAL VAL PHE ILE LYS LEU ASN ASN SER GLU SEQRES 19 B 253 PHE THR GLY THR SER SER GLY LYS PHE TYR ALA SER GLN SEQRES 20 B 253 ILE ARG ALA LYS PRO GLU SEQRES 1 C 416 ASP ASN PRO SER TYR GLN GLN SER PRO ARG HIS PHE VAL SEQRES 2 C 416 PRO THR GLY MET HIS SER LEU ALA LEU GLY THR ASN LEU SEQRES 3 C 416 VAL GLU PRO LEU HIS ALA LEU ARG LEU ASP ALA ALA GLY SEQRES 4 C 416 THR THR GLN HIS PRO VAL GLY CYS ALA PRO ASP GLU ASP SEQRES 5 C 416 MET THR VAL SER SER ILE ALA SER ARG TYR GLY LEU ILE SEQRES 6 C 416 ARG ARG VAL GLN TRP LYS LYS ASP HIS ALA LYS GLY SER SEQRES 7 C 416 LEU LEU LEU GLN LEU ASP ALA ASP PRO PHE VAL GLU GLN SEQRES 8 C 416 ARG ILE GLU GLY THR ASN PRO ILE SER LEU TYR TRP PHE SEQRES 9 C 416 ALA PRO VAL GLY VAL VAL SER SER MET PHE MET GLN TRP SEQRES 10 C 416 ARG GLY SER LEU GLU TYR ARG PHE ASP ILE ILE ALA SER SEQRES 11 C 416 GLN PHE HIS THR GLY ARG LEU ILE VAL GLY TYR VAL PRO SEQRES 12 C 416 GLY LEU THR ALA SER LEU GLN LEU GLN MET ASP TYR MET SEQRES 13 C 416 LYS LEU LYS SER SER SER TYR VAL VAL PHE ASP LEU GLN SEQRES 14 C 416 GLU SER ASN SER PHE THR PHE GLU VAL PRO TYR VAL SER SEQRES 15 C 416 TYR ARG PRO TRP TRP VAL ARG LYS TYR GLY GLY ASN TYR SEQRES 16 C 416 LEU PRO SER SER THR ASP ALA PRO SER THR LEU PHE MET SEQRES 17 C 416 TYR VAL GLN VAL PRO LEU ILE PRO MET GLU ALA VAL SER SEQRES 18 C 416 ASP THR ILE ASP ILE ASN VAL TYR VAL ARG GLY GLY SER SEQRES 19 C 416 SER PHE GLU VAL CYS VAL PRO VAL GLN PRO SER LEU GLY SEQRES 20 C 416 LEU ASN TRP ASN THR ASP PHE ILE LEU ARG ASN ASP GLU SEQRES 21 C 416 GLU TYR ARG ALA LYS THR GLY TYR ALA PRO TYR TYR ALA SEQRES 22 C 416 GLY VAL TRP HIS SER PHE ASN ASN SER ASN SER LEU VAL SEQRES 23 C 416 PHE ARG TRP GLY SER ALA SER ASP GLN ILE ALA GLN TRP SEQRES 24 C 416 PRO THR ILE SER VAL PRO ARG GLY GLU LEU ALA PHE LEU SEQRES 25 C 416 ARG ILE LYS ASP GLY LYS GLN ALA ALA VAL GLY THR GLN SEQRES 26 C 416 PRO TRP ARG THR MET VAL VAL TRP PRO SER GLY HIS GLY SEQRES 27 C 416 TYR ASN ILE GLY ILE PRO THR TYR ASN ALA GLU ARG ALA SEQRES 28 C 416 ARG GLN LEU ALA GLN HIS LEU TYR GLY GLY GLY SER LEU SEQRES 29 C 416 THR ASP GLU LYS ALA LYS GLN LEU PHE VAL PRO ALA ASN SEQRES 30 C 416 GLN GLN GLY PRO GLY LYS VAL SER ASN GLY ASN PRO VAL SEQRES 31 C 416 TRP GLU VAL MET ARG ALA PRO LEU ALA THR GLN ARG ALA SEQRES 32 C 416 HIS ILE GLN ASP PHE GLU PHE ILE GLU ALA ILE PRO GLU HET U5P C 501 20 HETNAM U5P URIDINE-5'-MONOPHOSPHATE FORMUL 4 U5P C9 H13 N2 O9 P HELIX 1 AA1 GLY A 22 GLY A 27 1 6 HELIX 2 AA2 LEU A 33 ARG A 38 1 6 HELIX 3 AA3 HIS A 81 CYS A 87 1 7 HELIX 4 AA4 ILE A 91 SER A 97 1 7 HELIX 5 AA5 ALA A 192 VAL A 197 5 6 HELIX 6 AA6 ASP A 212 ILE A 216 5 5 HELIX 7 AA7 ASP A 246 LEU A 248 5 3 HELIX 8 AA8 ILE B 84 ASN B 96 1 13 HELIX 9 AA9 ALA B 99 VAL B 103 5 5 HELIX 10 AB1 THR B 106 VAL B 111 1 6 HELIX 11 AB2 ASP B 143 LEU B 147 5 5 HELIX 12 AB3 ASN B 148 ARG B 153 1 6 HELIX 13 AB4 SER B 154 SER B 159 1 6 HELIX 14 AB5 SER B 241 TYR B 245 5 5 HELIX 15 AB6 THR C 54 ALA C 59 1 6 HELIX 16 AB7 ALA C 105 SER C 112 1 8 HELIX 17 AB8 ALA C 147 LEU C 151 5 5 HELIX 18 AB9 ASP C 154 LYS C 159 1 6 HELIX 19 AC1 LYS C 368 LEU C 372 1 5 HELIX 20 AC2 PRO C 375 GLN C 379 5 5 SHEET 1 AA1 2 GLN A 41 LEU A 47 0 SHEET 2 AA1 2 PRO A 220 TYR A 225 -1 O ILE A 223 N TYR A 43 SHEET 1 AA2 4 PHE A 61 CYS A 65 0 SHEET 2 AA2 4 GLY A 200 PHE A 206 -1 O ILE A 202 N PHE A 63 SHEET 3 AA2 4 ILE A 120 HIS A 124 -1 N TRP A 121 O GLY A 205 SHEET 4 AA2 4 ALA A 156 GLN A 160 -1 O GLN A 160 N ILE A 120 SHEET 1 AA3 2 PHE A 101 TYR A 102 0 SHEET 2 AA3 2 ASN A 181 TYR A 182 -1 O ASN A 181 N TYR A 102 SHEET 1 AA4 2 ILE A 110 VAL A 111 0 SHEET 2 AA4 2 VAL A 167 ILE A 168 -1 O ILE A 168 N ILE A 110 SHEET 1 AA5 2 MET A 243 ILE A 244 0 SHEET 2 AA5 2 LEU C 246 GLY C 247 -1 O GLY C 247 N MET A 243 SHEET 1 AA6 2 GLU B 15 LYS B 18 0 SHEET 2 AA6 2 VAL B 23 THR B 26 -1 O THR B 26 N GLU B 15 SHEET 1 AA7 4 TYR B 63 VAL B 69 0 SHEET 2 AA7 4 ASN B 224 LYS B 230 -1 O VAL B 225 N PHE B 68 SHEET 3 AA7 4 MET B 119 ILE B 125 -1 N GLN B 124 O VAL B 226 SHEET 4 AA7 4 ALA B 174 ILE B 178 -1 O ILE B 178 N MET B 119 SHEET 1 AA8 4 ARG B 82 LEU B 83 0 SHEET 2 AA8 4 GLY B 203 ARG B 214 -1 O LEU B 205 N LEU B 83 SHEET 3 AA8 4 VAL B 132 TYR B 141 -1 N THR B 138 O ASN B 206 SHEET 4 AA8 4 ALA B 164 SER B 167 -1 O ILE B 166 N LEU B 135 SHEET 1 AA9 3 LEU B 187 PRO B 188 0 SHEET 2 AA9 3 HIS B 112 ARG B 116 -1 N TRP B 115 O LEU B 187 SHEET 3 AA9 3 GLU B 235 THR B 239 -1 O THR B 237 N TYR B 114 SHEET 1 AB1 4 GLY C 63 TRP C 70 0 SHEET 2 AB1 4 ILE C 224 GLY C 232 -1 O ILE C 224 N TRP C 70 SHEET 3 AB1 4 LEU C 121 ILE C 127 -1 N GLU C 122 O ARG C 231 SHEET 4 AB1 4 SER C 173 VAL C 178 -1 O VAL C 178 N LEU C 121 SHEET 1 AB2 4 LEU C 79 LEU C 81 0 SHEET 2 AB2 4 SER C 204 ILE C 215 -1 O MET C 208 N LEU C 80 SHEET 3 AB2 4 THR C 134 PRO C 143 -1 N ARG C 136 O VAL C 212 SHEET 4 AB2 4 SER C 162 LEU C 168 -1 O VAL C 164 N VAL C 139 SHEET 1 AB3 2 GLN C 91 ARG C 92 0 SHEET 2 AB3 2 TYR C 102 TRP C 103 -1 O TRP C 103 N GLN C 91 SHEET 1 AB4 2 TRP C 117 ARG C 118 0 SHEET 2 AB4 2 GLU C 237 VAL C 238 -1 O GLU C 237 N ARG C 118 SHEET 1 AB5 2 TYR C 272 GLY C 274 0 SHEET 2 AB5 2 VAL C 286 ARG C 288 -1 O ARG C 288 N TYR C 272 SHEET 1 AB6 3 LEU C 312 ARG C 313 0 SHEET 2 AB6 3 THR C 329 PRO C 334 -1 O MET C 330 N LEU C 312 SHEET 3 AB6 3 ASN C 340 ILE C 343 -1 O ILE C 343 N VAL C 331 CISPEP 1 ALA C 269 PRO C 270 0 -1.02 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000