HEADER ENDOCYTOSIS 16-JAN-17 5MVF TITLE ACTIVE STRUCTURE OF EHD4 COMPLEXED WITH ADP COMPND MOL_ID: 1; COMPND 2 MOLECULE: EH DOMAIN-CONTAINING PROTEIN 4; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: PAST HOMOLOG 2,MPAST2; COMPND 5 ENGINEERED: YES; COMPND 6 OTHER_DETAILS: THE RESIDUES GGS BELONG TO THE EXPRESSION TAG. THE EHD COMPND 7 SEQUENCE STARTS ON RESIDUE Q22. SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 3 ORGANISM_COMMON: MOUSE; SOURCE 4 ORGANISM_TAXID: 10090; SOURCE 5 GENE: EHD4, PAST2; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS DYNAMIN-LIKE, AUTO-INHIBITION, ACTIVATION, ENDOCYTOSIS EXPDTA X-RAY DIFFRACTION AUTHOR A.A.MELO,O.DAUMKE REVDAT 4 17-JAN-24 5MVF 1 REMARK REVDAT 3 06-SEP-17 5MVF 1 REMARK REVDAT 2 07-JUN-17 5MVF 1 JRNL REVDAT 1 08-MAR-17 5MVF 0 JRNL AUTH A.A.MELO,B.G.HEGDE,C.SHAH,E.LARSSON,J.M.ISAS,S.KUNZ, JRNL AUTH 2 R.LUNDMARK,R.LANGEN,O.DAUMKE JRNL TITL STRUCTURAL INSIGHTS INTO THE ACTIVATION MECHANISM OF JRNL TITL 2 DYNAMIN-LIKE EHD ATPASES. JRNL REF PROC. NATL. ACAD. SCI. V. 114 5629 2017 JRNL REF 2 U.S.A. JRNL REFN ESSN 1091-6490 JRNL PMID 28228524 JRNL DOI 10.1073/PNAS.1614075114 REMARK 2 REMARK 2 RESOLUTION. 3.27 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.11.1_2575) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.27 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 48.38 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.330 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 3 NUMBER OF REFLECTIONS : 13644 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.239 REMARK 3 R VALUE (WORKING SET) : 0.238 REMARK 3 FREE R VALUE : 0.264 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 682 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 48.3836 - 5.5853 1.00 2774 146 0.2335 0.2554 REMARK 3 2 5.5853 - 4.4342 1.00 2608 137 0.2101 0.2326 REMARK 3 3 4.4342 - 3.8739 1.00 2566 135 0.2187 0.2673 REMARK 3 4 3.8739 - 3.5199 1.00 2533 133 0.2702 0.2967 REMARK 3 5 3.5199 - 3.2676 0.98 2481 131 0.3378 0.3515 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.460 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 25.900 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.002 3115 REMARK 3 ANGLE : 0.563 4204 REMARK 3 CHIRALITY : 0.039 459 REMARK 3 PLANARITY : 0.002 539 REMARK 3 DIHEDRAL : 10.888 1894 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 5 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 19 THROUGH 73 ) REMARK 3 ORIGIN FOR THE GROUP (A): 69.6115 383.9582 40.5648 REMARK 3 T TENSOR REMARK 3 T11: 1.1392 T22: 0.7319 REMARK 3 T33: 0.9125 T12: -0.0073 REMARK 3 T13: -0.3184 T23: -0.1784 REMARK 3 L TENSOR REMARK 3 L11: 1.0086 L22: 3.7964 REMARK 3 L33: 4.4721 L12: 0.4374 REMARK 3 L13: -0.7518 L23: -6.0056 REMARK 3 S TENSOR REMARK 3 S11: 0.1063 S12: -0.2682 S13: 0.1147 REMARK 3 S21: 1.6502 S22: -0.4467 S23: -0.9672 REMARK 3 S31: -0.8434 S32: -0.0676 S33: 0.3142 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 74 THROUGH 270 ) REMARK 3 ORIGIN FOR THE GROUP (A): 59.7428 363.7769 53.3265 REMARK 3 T TENSOR REMARK 3 T11: 0.6374 T22: 0.7145 REMARK 3 T33: 0.5615 T12: 0.0595 REMARK 3 T13: -0.0851 T23: -0.1100 REMARK 3 L TENSOR REMARK 3 L11: 4.8632 L22: 8.8140 REMARK 3 L33: 5.0699 L12: 4.3015 REMARK 3 L13: 2.1808 L23: 3.5736 REMARK 3 S TENSOR REMARK 3 S11: 0.1018 S12: -0.7689 S13: 0.5784 REMARK 3 S21: 0.5175 S22: -0.4825 S23: 0.6643 REMARK 3 S31: -0.6947 S32: -0.4498 S33: 0.3909 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 271 THROUGH 349 ) REMARK 3 ORIGIN FOR THE GROUP (A): 62.0721 388.9543 29.0855 REMARK 3 T TENSOR REMARK 3 T11: 0.9724 T22: 0.7468 REMARK 3 T33: 0.7431 T12: 0.0054 REMARK 3 T13: -0.2671 T23: -0.0902 REMARK 3 L TENSOR REMARK 3 L11: 0.5104 L22: 7.4510 REMARK 3 L33: -0.0586 L12: 2.0722 REMARK 3 L13: -0.9139 L23: -0.9583 REMARK 3 S TENSOR REMARK 3 S11: 0.0042 S12: 0.2432 S13: 0.1896 REMARK 3 S21: -0.7891 S22: 0.0750 S23: 1.1635 REMARK 3 S31: 0.1158 S32: -0.3385 S33: -0.0736 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 350 THROUGH 403 ) REMARK 3 ORIGIN FOR THE GROUP (A): 66.2770 393.4665 27.2523 REMARK 3 T TENSOR REMARK 3 T11: 0.7164 T22: 0.6183 REMARK 3 T33: 0.7405 T12: -0.0288 REMARK 3 T13: 0.0711 T23: -0.0051 REMARK 3 L TENSOR REMARK 3 L11: 5.0899 L22: 4.8990 REMARK 3 L33: 2.7945 L12: -2.7009 REMARK 3 L13: 0.6897 L23: 0.3446 REMARK 3 S TENSOR REMARK 3 S11: 0.3285 S12: 0.2630 S13: -0.3396 REMARK 3 S21: -0.6200 S22: -0.5027 S23: 0.5191 REMARK 3 S31: -0.3648 S32: -0.2031 S33: 0.1071 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND RESID ' 600 ' REMARK 3 ORIGIN FOR THE GROUP (A): 62.5221 353.8491 60.0257 REMARK 3 T TENSOR REMARK 3 T11: 1.3306 T22: 2.1750 REMARK 3 T33: 1.1630 T12: -0.3690 REMARK 3 T13: -0.5173 T23: -0.2386 REMARK 3 L TENSOR REMARK 3 L11: 2.0077 L22: 5.9744 REMARK 3 L33: 2.0013 L12: 5.6679 REMARK 3 L13: -5.0218 L23: 2.0163 REMARK 3 S TENSOR REMARK 3 S11: 1.9664 S12: 3.1887 S13: -1.4889 REMARK 3 S21: 0.7612 S22: -0.0159 S23: 0.7855 REMARK 3 S31: 0.3496 S32: 2.8011 S33: -1.4816 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5MVF COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 16-JAN-17. REMARK 100 THE DEPOSITION ID IS D_1200003006. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 10-JUN-15 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : BESSY REMARK 200 BEAMLINE : 14.1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.918409 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL MONOCHROMATOR SI REMARK 200 -111 REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 13647 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.268 REMARK 200 RESOLUTION RANGE LOW (A) : 48.380 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 200 DATA REDUNDANCY : 10.50 REMARK 200 R MERGE (I) : 0.27400 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 9.5300 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.27 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.46 REMARK 200 COMPLETENESS FOR SHELL (%) : 97.0 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.020 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 4CID REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 64.80 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.49 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 900 MM SODIUM MALONATE (PH 7), VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 42 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -Y+1/2,X+1/2,Z+1/2 REMARK 290 4555 Y+1/2,-X+1/2,Z+1/2 REMARK 290 5555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 6555 X+1/2,-Y+1/2,-Z+1/2 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 99.73450 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 99.73450 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 20.89500 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 99.73450 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 99.73450 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 20.89500 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 99.73450 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 99.73450 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 20.89500 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 99.73450 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 99.73450 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 20.89500 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3980 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 36020 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -48.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.000000 -1.000000 0.000000 398.93800 REMARK 350 BIOMT2 2 -1.000000 0.000000 0.000000 398.93800 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 83.58000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 92 REMARK 465 PRO A 93 REMARK 465 GLU A 94 REMARK 465 PRO A 95 REMARK 465 THR A 96 REMARK 465 THR A 97 REMARK 465 GLY A 163 REMARK 465 GLU A 164 REMARK 465 LYS A 165 REMARK 465 GLN A 166 REMARK 465 GLU A 404 REMARK 465 MET A 405 REMARK 465 ASN A 406 REMARK 465 MET A 407 REMARK 465 PRO A 408 REMARK 465 THR A 409 REMARK 465 GLN A 410 REMARK 465 MET A 411 REMARK 465 VAL A 412 REMARK 465 GLN A 413 REMARK 465 GLY A 414 REMARK 465 GLY A 415 REMARK 465 ALA A 416 REMARK 465 PHE A 417 REMARK 465 ASP A 418 REMARK 465 GLY A 419 REMARK 465 THR A 420 REMARK 465 THR A 421 REMARK 465 GLU A 422 REMARK 465 GLY A 423 REMARK 465 PRO A 424 REMARK 465 PHE A 425 REMARK 465 ASN A 426 REMARK 465 GLN A 427 REMARK 465 GLY A 428 REMARK 465 TYR A 429 REMARK 465 GLY A 430 REMARK 465 GLU A 431 REMARK 465 GLY A 432 REMARK 465 ALA A 433 REMARK 465 LYS A 434 REMARK 465 GLU A 435 REMARK 465 GLY A 436 REMARK 465 ALA A 437 REMARK 465 ASP A 438 REMARK 465 GLU A 439 REMARK 465 GLU A 440 REMARK 465 GLU A 441 REMARK 465 TRP A 442 REMARK 465 VAL A 443 REMARK 465 VAL A 444 REMARK 465 ALA A 445 REMARK 465 LYS A 446 REMARK 465 ASP A 447 REMARK 465 LYS A 448 REMARK 465 PRO A 449 REMARK 465 VAL A 450 REMARK 465 TYR A 451 REMARK 465 ASP A 452 REMARK 465 GLU A 453 REMARK 465 LEU A 454 REMARK 465 PHE A 455 REMARK 465 TYR A 456 REMARK 465 THR A 457 REMARK 465 LEU A 458 REMARK 465 SER A 459 REMARK 465 PRO A 460 REMARK 465 ILE A 461 REMARK 465 ASN A 462 REMARK 465 GLY A 463 REMARK 465 LYS A 464 REMARK 465 ILE A 465 REMARK 465 SER A 466 REMARK 465 GLY A 467 REMARK 465 VAL A 468 REMARK 465 ASN A 469 REMARK 465 ALA A 470 REMARK 465 LYS A 471 REMARK 465 LYS A 472 REMARK 465 GLU A 473 REMARK 465 MET A 474 REMARK 465 VAL A 475 REMARK 465 THR A 476 REMARK 465 SER A 477 REMARK 465 LYS A 478 REMARK 465 LEU A 479 REMARK 465 PRO A 480 REMARK 465 ASN A 481 REMARK 465 SER A 482 REMARK 465 VAL A 483 REMARK 465 LEU A 484 REMARK 465 GLY A 485 REMARK 465 LYS A 486 REMARK 465 ILE A 487 REMARK 465 TRP A 488 REMARK 465 LYS A 489 REMARK 465 LEU A 490 REMARK 465 ALA A 491 REMARK 465 ASP A 492 REMARK 465 CYS A 493 REMARK 465 ASP A 494 REMARK 465 CYS A 495 REMARK 465 ASP A 496 REMARK 465 GLY A 497 REMARK 465 MET A 498 REMARK 465 LEU A 499 REMARK 465 ASP A 500 REMARK 465 GLU A 501 REMARK 465 GLU A 502 REMARK 465 GLU A 503 REMARK 465 PHE A 504 REMARK 465 ALA A 505 REMARK 465 LEU A 506 REMARK 465 ALA A 507 REMARK 465 LYS A 508 REMARK 465 HIS A 509 REMARK 465 LEU A 510 REMARK 465 ILE A 511 REMARK 465 LYS A 512 REMARK 465 ILE A 513 REMARK 465 LYS A 514 REMARK 465 LEU A 515 REMARK 465 ASP A 516 REMARK 465 GLY A 517 REMARK 465 TYR A 518 REMARK 465 GLU A 519 REMARK 465 LEU A 520 REMARK 465 PRO A 521 REMARK 465 ASN A 522 REMARK 465 SER A 523 REMARK 465 LEU A 524 REMARK 465 PRO A 525 REMARK 465 PRO A 526 REMARK 465 HIS A 527 REMARK 465 LEU A 528 REMARK 465 VAL A 529 REMARK 465 PRO A 530 REMARK 465 PRO A 531 REMARK 465 SER A 532 REMARK 465 HIS A 533 REMARK 465 ARG A 534 REMARK 465 LYS A 535 REMARK 465 SER A 536 REMARK 465 LEU A 537 REMARK 465 PRO A 538 REMARK 465 LYS A 539 REMARK 465 ALA A 540 REMARK 465 ASP A 541 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG A 167 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 272 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 337 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 373 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 HH21 ARG A 170 OE2 GLU A 202 1.56 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 OD1 ASN A 133 HZ3 LYS A 302 1556 1.58 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 HIS A 49 -82.98 -113.43 REMARK 500 GLU A 59 30.87 -87.44 REMARK 500 ARG A 90 96.24 42.27 REMARK 500 ARG A 138 48.41 -108.04 REMARK 500 LEU A 144 143.66 -171.78 REMARK 500 SER A 169 89.55 174.24 REMARK 500 LYS A 196 74.72 -153.52 REMARK 500 GLN A 213 44.26 -141.32 REMARK 500 MET A 324 -82.61 -144.92 REMARK 500 GLN A 402 72.91 -67.12 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 602 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 THR A 75 OG1 REMARK 620 2 ASP A 156 OD2 99.7 REMARK 620 3 ADP A 601 O2B 69.3 157.9 REMARK 620 N 1 2 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ADP A 601 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG A 602 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5MTV RELATED DB: PDB REMARK 900 5MTV CONTAINS THE SAME PROTEIN COMPLEXED WITH ATPGAMMAS. DBREF 5MVF A 22 541 UNP Q9EQP2 EHD4_MOUSE 22 541 SEQADV 5MVF GLY A 19 UNP Q9EQP2 EXPRESSION TAG SEQADV 5MVF GLY A 20 UNP Q9EQP2 EXPRESSION TAG SEQADV 5MVF SER A 21 UNP Q9EQP2 EXPRESSION TAG SEQRES 1 A 523 GLY GLY SER GLN THR VAL THR GLY GLY LEU ARG SER LEU SEQRES 2 A 523 TYR GLN ARG LYS VAL LEU PRO LEU GLU GLU ALA TYR ARG SEQRES 3 A 523 PHE HIS GLU PHE HIS SER PRO ALA LEU GLU ASP ALA ASP SEQRES 4 A 523 PHE GLU ASN LYS PRO MET ILE LEU LEU VAL GLY GLN TYR SEQRES 5 A 523 SER THR GLY LYS THR THR PHE ILE ARG TYR LEU LEU GLU SEQRES 6 A 523 GLN ASP PHE PRO GLY MET ARG ILE GLY PRO GLU PRO THR SEQRES 7 A 523 THR ASP SER PHE ILE ALA VAL MET TYR GLY GLU THR GLU SEQRES 8 A 523 GLY SER THR PRO GLY ASN ALA LEU VAL VAL ASP PRO LYS SEQRES 9 A 523 LYS PRO PHE ARG LYS LEU SER ARG PHE GLY ASN ALA PHE SEQRES 10 A 523 LEU ASN ARG PHE MET CYS SER GLN LEU PRO ASN GLN VAL SEQRES 11 A 523 LEU LYS SER ILE SER ILE ILE ASP SER PRO GLY ILE LEU SEQRES 12 A 523 SER GLY GLU LYS GLN ARG ILE SER ARG GLY TYR ASP PHE SEQRES 13 A 523 CYS GLN VAL LEU GLN TRP PHE ALA GLU ARG VAL ASP ARG SEQRES 14 A 523 ILE ILE LEU LEU PHE ASP ALA HIS LYS LEU ASP ILE SER SEQRES 15 A 523 ASP GLU PHE SER GLU ALA ILE LYS ALA PHE ARG GLY GLN SEQRES 16 A 523 ASP ASP LYS ILE ARG VAL VAL LEU ASN LYS ALA ASP GLN SEQRES 17 A 523 VAL ASP THR GLN GLN LEU MET ARG VAL TYR GLY ALA LEU SEQRES 18 A 523 MET TRP SER LEU GLY LYS VAL ILE ASN THR PRO GLU VAL SEQRES 19 A 523 LEU ARG VAL TYR ILE GLY SER PHE TRP ALA GLN PRO LEU SEQRES 20 A 523 GLN ASN THR ASP ASN ARG ARG LEU PHE GLU ALA GLU ALA SEQRES 21 A 523 GLN ASP LEU PHE ARG ASP ILE GLN SER LEU PRO GLN LYS SEQRES 22 A 523 ALA ALA VAL ARG LYS LEU ASN ASP LEU ILE LYS ARG ALA SEQRES 23 A 523 ARG LEU ALA LYS VAL HIS ALA TYR ILE ILE SER TYR LEU SEQRES 24 A 523 LYS LYS GLU MET PRO ASN MET PHE GLY LYS GLU ASN LYS SEQRES 25 A 523 LYS ARG GLU LEU ILE TYR ARG LEU PRO GLU ILE TYR VAL SEQRES 26 A 523 GLN LEU GLN ARG GLU TYR GLN ILE SER ALA GLY ASP PHE SEQRES 27 A 523 PRO GLU VAL LYS ALA MET GLN GLU GLN LEU GLU ASN TYR SEQRES 28 A 523 ASP PHE THR LYS PHE HIS SER LEU LYS PRO LYS LEU ILE SEQRES 29 A 523 GLU ALA VAL ASP ASN MET LEU THR ASN LYS ILE SER SER SEQRES 30 A 523 LEU MET GLY LEU ILE SER GLN GLU GLU MET ASN MET PRO SEQRES 31 A 523 THR GLN MET VAL GLN GLY GLY ALA PHE ASP GLY THR THR SEQRES 32 A 523 GLU GLY PRO PHE ASN GLN GLY TYR GLY GLU GLY ALA LYS SEQRES 33 A 523 GLU GLY ALA ASP GLU GLU GLU TRP VAL VAL ALA LYS ASP SEQRES 34 A 523 LYS PRO VAL TYR ASP GLU LEU PHE TYR THR LEU SER PRO SEQRES 35 A 523 ILE ASN GLY LYS ILE SER GLY VAL ASN ALA LYS LYS GLU SEQRES 36 A 523 MET VAL THR SER LYS LEU PRO ASN SER VAL LEU GLY LYS SEQRES 37 A 523 ILE TRP LYS LEU ALA ASP CYS ASP CYS ASP GLY MET LEU SEQRES 38 A 523 ASP GLU GLU GLU PHE ALA LEU ALA LYS HIS LEU ILE LYS SEQRES 39 A 523 ILE LYS LEU ASP GLY TYR GLU LEU PRO ASN SER LEU PRO SEQRES 40 A 523 PRO HIS LEU VAL PRO PRO SER HIS ARG LYS SER LEU PRO SEQRES 41 A 523 LYS ALA ASP HET ADP A 601 27 HET MG A 602 1 HETNAM ADP ADENOSINE-5'-DIPHOSPHATE HETNAM MG MAGNESIUM ION FORMUL 2 ADP C10 H15 N5 O10 P2 FORMUL 3 MG MG 2+ FORMUL 4 HOH *(H2 O) HELIX 1 AA1 GLY A 19 VAL A 36 1 18 HELIX 2 AA2 VAL A 36 TYR A 43 1 8 HELIX 3 AA3 ARG A 44 HIS A 49 1 6 HELIX 4 AA4 GLU A 54 PHE A 58 5 5 HELIX 5 AA5 GLY A 73 GLU A 83 1 11 HELIX 6 AA6 GLY A 114 VAL A 118 1 5 HELIX 7 AA7 LYS A 123 PHE A 131 5 9 HELIX 8 AA8 GLY A 132 ASN A 137 1 6 HELIX 9 AA9 ASN A 146 ILE A 152 1 7 HELIX 10 AB1 ASP A 173 VAL A 185 1 13 HELIX 11 AB2 SER A 200 PHE A 210 1 11 HELIX 12 AB3 GLN A 213 ASP A 215 5 3 HELIX 13 AB4 ASP A 228 ASN A 248 1 21 HELIX 14 AB5 ASN A 267 ASP A 269 5 3 HELIX 15 AB6 ASN A 270 MET A 321 1 52 HELIX 16 AB7 GLY A 326 ARG A 337 1 12 HELIX 17 AB8 ARG A 337 GLN A 350 1 14 HELIX 18 AB9 GLU A 358 GLU A 367 1 10 HELIX 19 AC1 ASN A 368 TYR A 369 5 2 HELIX 20 AC2 ASP A 370 PHE A 374 5 5 HELIX 21 AC3 LYS A 378 ASN A 391 1 14 HELIX 22 AC4 ASN A 391 GLN A 402 1 12 SHEET 1 AA1 8 GLY A 110 PRO A 113 0 SHEET 2 AA1 8 PHE A 139 GLN A 143 -1 O GLN A 143 N GLY A 110 SHEET 3 AA1 8 PHE A 100 MET A 104 1 N ALA A 102 O MET A 140 SHEET 4 AA1 8 SER A 153 ASP A 156 -1 O ILE A 154 N VAL A 103 SHEET 5 AA1 8 MET A 63 GLY A 68 1 N ILE A 64 O ILE A 155 SHEET 6 AA1 8 ARG A 187 ASP A 193 1 O ILE A 189 N LEU A 65 SHEET 7 AA1 8 ILE A 217 ASN A 222 1 O ASN A 222 N PHE A 192 SHEET 8 AA1 8 VAL A 255 ILE A 257 1 O TYR A 256 N VAL A 219 LINK OG1 THR A 75 MG MG A 602 1555 1555 2.31 LINK OD2 ASP A 156 MG MG A 602 1555 1555 2.43 LINK O2B ADP A 601 MG MG A 602 1555 1555 2.66 SITE 1 AC1 14 TYR A 70 SER A 71 THR A 72 GLY A 73 SITE 2 AC1 14 LYS A 74 THR A 75 THR A 76 ILE A 91 SITE 3 AC1 14 ASN A 222 LYS A 223 GLN A 226 SER A 259 SITE 4 AC1 14 TRP A 261 MG A 602 SITE 1 AC2 3 THR A 75 ASP A 156 ADP A 601 CRYST1 199.469 199.469 41.790 90.00 90.00 90.00 P 42 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.005013 0.000000 0.000000 0.00000 SCALE2 0.000000 0.005013 0.000000 0.00000 SCALE3 0.000000 0.000000 0.023929 0.00000