HEADER IMMUNE SYSTEM 16-JAN-17 5MVG TITLE CRYSTAL STRUCTURE OF NON-AMYLOIDOGENIC LIGHT CHAIN DIMER M7 COMPND MOL_ID: 1; COMPND 2 MOLECULE: LIGHT CHAIN DIMER; COMPND 3 CHAIN: A, B SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606 KEYWDS LIGHT CHAIN DIMER, LIGHT CHAIN AMYLOIDOSIS, IMMUNOGLOBULIN FOLD, KEYWDS 2 PROTEIN AGGREGATION, IMMUNE SYSTEM EXPDTA X-RAY DIFFRACTION AUTHOR L.OBERTI,P.ROGNONI,J.BACARIZO,M.BOLOGNESI,S.RICAGNO REVDAT 2 17-JAN-24 5MVG 1 REMARK REVDAT 1 13-DEC-17 5MVG 0 JRNL AUTH L.OBERTI,P.ROGNONI,A.BARBIROLI,F.LAVATELLI,R.RUSSO, JRNL AUTH 2 M.MARITAN,G.PALLADINI,M.BOLOGNESI,G.MERLINI,S.RICAGNO JRNL TITL CONCURRENT STRUCTURAL AND BIOPHYSICAL TRAITS LINK WITH JRNL TITL 2 IMMUNOGLOBULIN LIGHT CHAINS AMYLOID PROPENSITY. JRNL REF SCI REP V. 7 16809 2017 JRNL REFN ESSN 2045-2322 JRNL PMID 29196671 JRNL DOI 10.1038/S41598-017-16953-7 REMARK 2 REMARK 2 RESOLUTION. 2.20 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : BUSTER 2.10.3 REMARK 3 AUTHORS : BRICOGNE,BLANC,BRANDL,FLENSBURG,KELLER, REMARK 3 : PACIOREK,ROVERSI,SHARFF,SMART,VONRHEIN, REMARK 3 : WOMACK,MATTHEWS,TEN EYCK,TRONRUD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.20 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 25.97 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 26059 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.209 REMARK 3 R VALUE (WORKING SET) : 0.207 REMARK 3 FREE R VALUE : 0.239 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.280 REMARK 3 FREE R VALUE TEST SET COUNT : 1377 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 13 REMARK 3 BIN RESOLUTION RANGE HIGH (ANGSTROMS) : 2.20 REMARK 3 BIN RESOLUTION RANGE LOW (ANGSTROMS) : 2.29 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.93 REMARK 3 REFLECTIONS IN BIN (WORKING + TEST SET) : 2888 REMARK 3 BIN R VALUE (WORKING + TEST SET) : 0.1970 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 2745 REMARK 3 BIN R VALUE (WORKING SET) : 0.1955 REMARK 3 BIN FREE R VALUE : 0.2262 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 4.95 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 143 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2904 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 6 REMARK 3 SOLVENT ATOMS : 258 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 35.60 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 47.72 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -2.07480 REMARK 3 B22 (A**2) : -2.07480 REMARK 3 B33 (A**2) : 4.14970 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.290 REMARK 3 DPI (BLOW EQ-10) BASED ON R VALUE (A) : 0.241 REMARK 3 DPI (BLOW EQ-9) BASED ON FREE R VALUE (A) : 0.189 REMARK 3 DPI (CRUICKSHANK) BASED ON R VALUE (A) : 0.222 REMARK 3 DPI (CRUICKSHANK) BASED ON FREE R VALUE (A) : 0.183 REMARK 3 REMARK 3 REFERENCES: BLOW, D. (2002) ACTA CRYST D58, 792-797 REMARK 3 CRUICKSHANK, D.W.J. (1999) ACTA CRYST D55, 583-601 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.921 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.893 REMARK 3 REMARK 3 NUMBER OF GEOMETRIC FUNCTION TERMS DEFINED : 15 REMARK 3 TERM COUNT WEIGHT FUNCTION. REMARK 3 BOND LENGTHS : 2984 ; 2.000 ; HARMONIC REMARK 3 BOND ANGLES : 4070 ; 2.000 ; HARMONIC REMARK 3 TORSION ANGLES : 972 ; 2.000 ; SINUSOIDAL REMARK 3 TRIGONAL CARBON PLANES : 67 ; 2.000 ; HARMONIC REMARK 3 GENERAL PLANES : 428 ; 5.000 ; HARMONIC REMARK 3 ISOTROPIC THERMAL FACTORS : 2984 ; 20.000 ; HARMONIC REMARK 3 BAD NON-BONDED CONTACTS : NULL ; NULL ; NULL REMARK 3 IMPROPER TORSIONS : NULL ; NULL ; NULL REMARK 3 PSEUDOROTATION ANGLES : NULL ; NULL ; NULL REMARK 3 CHIRAL IMPROPER TORSION : 408 ; 5.000 ; SEMIHARMONIC REMARK 3 SUM OF OCCUPANCIES : NULL ; NULL ; NULL REMARK 3 UTILITY DISTANCES : NULL ; NULL ; NULL REMARK 3 UTILITY ANGLES : NULL ; NULL ; NULL REMARK 3 UTILITY TORSION : NULL ; NULL ; NULL REMARK 3 IDEAL-DIST CONTACT TERM : 3369 ; 4.000 ; SEMIHARMONIC REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.007 REMARK 3 BOND ANGLES (DEGREES) : 1.05 REMARK 3 PEPTIDE OMEGA TORSION ANGLES (DEGREES) : 2.82 REMARK 3 OTHER TORSION ANGLES (DEGREES) : 16.60 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 11 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: { A|10 - A|42 } REMARK 3 ORIGIN FOR THE GROUP (A): 23.9301 -54.5970 -10.6570 REMARK 3 T TENSOR REMARK 3 T11: -0.1526 T22: 0.2535 REMARK 3 T33: -0.0431 T12: 0.1154 REMARK 3 T13: 0.0356 T23: -0.0073 REMARK 3 L TENSOR REMARK 3 L11: -0.3612 L22: 0.7757 REMARK 3 L33: 6.2469 L12: 0.1818 REMARK 3 L13: -1.5737 L23: -5.2841 REMARK 3 S TENSOR REMARK 3 S11: -0.0326 S12: -0.1241 S13: 0.0736 REMARK 3 S21: 0.2359 S22: -0.0242 S23: -0.1856 REMARK 3 S31: -0.0359 S32: 0.0471 S33: 0.0569 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: { A|43 - A|74 } REMARK 3 ORIGIN FOR THE GROUP (A): 26.0866 -64.5260 -10.3860 REMARK 3 T TENSOR REMARK 3 T11: -0.0596 T22: 0.1994 REMARK 3 T33: -0.0251 T12: 0.0497 REMARK 3 T13: 0.0700 T23: 0.0755 REMARK 3 L TENSOR REMARK 3 L11: 0.5967 L22: -0.4068 REMARK 3 L33: 0.0000 L12: -0.3192 REMARK 3 L13: -0.2616 L23: -4.1214 REMARK 3 S TENSOR REMARK 3 S11: -0.0042 S12: -0.0284 S13: -0.0300 REMARK 3 S21: 0.1025 S22: -0.0087 S23: 0.0016 REMARK 3 S31: 0.1736 S32: -0.0301 S33: 0.0129 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: { A|75 - A|102 } REMARK 3 ORIGIN FOR THE GROUP (A): 20.7333 -56.8377 -15.7945 REMARK 3 T TENSOR REMARK 3 T11: 0.0034 T22: 0.0916 REMARK 3 T33: 0.0884 T12: 0.0876 REMARK 3 T13: 0.0935 T23: 0.0746 REMARK 3 L TENSOR REMARK 3 L11: 4.0940 L22: 8.5316 REMARK 3 L33: 1.4800 L12: 4.2135 REMARK 3 L13: -1.7822 L23: -4.6247 REMARK 3 S TENSOR REMARK 3 S11: 0.0912 S12: -0.1878 S13: 0.0634 REMARK 3 S21: -0.0717 S22: -0.0040 S23: 0.1147 REMARK 3 S31: 0.0657 S32: 0.0307 S33: -0.0872 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: { A|103 - A|173 } REMARK 3 ORIGIN FOR THE GROUP (A): 11.6650 -33.7983 -24.2838 REMARK 3 T TENSOR REMARK 3 T11: -0.2017 T22: 0.1410 REMARK 3 T33: -0.1078 T12: 0.0108 REMARK 3 T13: -0.0227 T23: 0.0592 REMARK 3 L TENSOR REMARK 3 L11: 3.7593 L22: 2.2948 REMARK 3 L33: 0.9381 L12: -1.0124 REMARK 3 L13: -1.0760 L23: 0.2053 REMARK 3 S TENSOR REMARK 3 S11: -0.1002 S12: 0.0427 S13: -0.1479 REMARK 3 S21: -0.0805 S22: -0.0044 S23: 0.0263 REMARK 3 S31: 0.0817 S32: -0.1652 S33: 0.1046 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: { A|174 - A|211 } REMARK 3 ORIGIN FOR THE GROUP (A): 11.5994 -25.0716 -21.0366 REMARK 3 T TENSOR REMARK 3 T11: -0.1428 T22: 0.1950 REMARK 3 T33: -0.0079 T12: 0.0035 REMARK 3 T13: -0.0520 T23: 0.0424 REMARK 3 L TENSOR REMARK 3 L11: 2.8504 L22: 1.4856 REMARK 3 L33: 1.9718 L12: 0.6358 REMARK 3 L13: 0.2436 L23: 0.2371 REMARK 3 S TENSOR REMARK 3 S11: -0.0357 S12: -0.2915 S13: 0.3053 REMARK 3 S21: 0.0990 S22: 0.0093 S23: 0.0116 REMARK 3 S31: -0.2012 S32: 0.0658 S33: 0.0264 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: { B|3 - B|74 } REMARK 3 ORIGIN FOR THE GROUP (A): 0.7455 -58.5988 -2.5767 REMARK 3 T TENSOR REMARK 3 T11: -0.1218 T22: 0.0017 REMARK 3 T33: -0.0955 T12: 0.0293 REMARK 3 T13: 0.0186 T23: 0.1009 REMARK 3 L TENSOR REMARK 3 L11: 3.3815 L22: 5.3696 REMARK 3 L33: 8.7059 L12: -0.9934 REMARK 3 L13: 2.1034 L23: -5.0005 REMARK 3 S TENSOR REMARK 3 S11: -0.0164 S12: 0.0891 S13: -0.4690 REMARK 3 S21: -0.1049 S22: 0.5302 S23: 0.2717 REMARK 3 S31: 0.5857 S32: -0.5942 S33: -0.5137 REMARK 3 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: { B|75 - B|90 } REMARK 3 ORIGIN FOR THE GROUP (A): 0.5871 -54.3745 -6.8072 REMARK 3 T TENSOR REMARK 3 T11: -0.1513 T22: 0.0148 REMARK 3 T33: -0.1718 T12: 0.0300 REMARK 3 T13: 0.0215 T23: 0.1243 REMARK 3 L TENSOR REMARK 3 L11: 1.7900 L22: 3.6482 REMARK 3 L33: 3.3393 L12: 0.2277 REMARK 3 L13: 1.0262 L23: -3.3550 REMARK 3 S TENSOR REMARK 3 S11: -0.1053 S12: 0.1699 S13: 0.0081 REMARK 3 S21: 0.0364 S22: 0.2648 S23: 0.1561 REMARK 3 S31: 0.2826 S32: -0.3101 S33: -0.1594 REMARK 3 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: { B|91 - B|103 } REMARK 3 ORIGIN FOR THE GROUP (A): 12.3441 -66.8667 -3.2713 REMARK 3 T TENSOR REMARK 3 T11: 0.3159 T22: 0.0933 REMARK 3 T33: 0.0037 T12: 0.0857 REMARK 3 T13: 0.0665 T23: 0.0304 REMARK 3 L TENSOR REMARK 3 L11: 0.9207 L22: 4.2475 REMARK 3 L33: 0.0000 L12: 1.0347 REMARK 3 L13: 0.2306 L23: 1.8056 REMARK 3 S TENSOR REMARK 3 S11: 0.0336 S12: -0.0758 S13: -0.1580 REMARK 3 S21: -0.0021 S22: 0.0173 S23: -0.0866 REMARK 3 S31: 0.0687 S32: 0.1384 S33: -0.0509 REMARK 3 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: { B|104 - B|139 } REMARK 3 ORIGIN FOR THE GROUP (A): 1.8485 -32.9675 -28.3717 REMARK 3 T TENSOR REMARK 3 T11: -0.2250 T22: 0.1874 REMARK 3 T33: -0.1242 T12: 0.0046 REMARK 3 T13: -0.0011 T23: 0.0564 REMARK 3 L TENSOR REMARK 3 L11: 1.5799 L22: 1.3981 REMARK 3 L33: 2.7266 L12: -0.4266 REMARK 3 L13: 1.1395 L23: -1.3062 REMARK 3 S TENSOR REMARK 3 S11: -0.1131 S12: 0.1232 S13: 0.1875 REMARK 3 S21: -0.0556 S22: 0.2494 S23: 0.2803 REMARK 3 S31: -0.0803 S32: -0.1189 S33: -0.1363 REMARK 3 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: { B|140 - B|183 } REMARK 3 ORIGIN FOR THE GROUP (A): 0.3054 -37.6961 -31.6038 REMARK 3 T TENSOR REMARK 3 T11: -0.2090 T22: 0.1652 REMARK 3 T33: -0.0627 T12: -0.0279 REMARK 3 T13: 0.0022 T23: 0.0701 REMARK 3 L TENSOR REMARK 3 L11: 4.7936 L22: 1.9998 REMARK 3 L33: 3.7706 L12: 0.0872 REMARK 3 L13: 0.0130 L23: -2.1173 REMARK 3 S TENSOR REMARK 3 S11: -0.0378 S12: 0.4061 S13: -0.4856 REMARK 3 S21: -0.1165 S22: 0.2227 S23: 0.0766 REMARK 3 S31: 0.1005 S32: 0.0516 S33: -0.1849 REMARK 3 REMARK 3 TLS GROUP : 11 REMARK 3 SELECTION: { B|184 - B|211 } REMARK 3 ORIGIN FOR THE GROUP (A): -1.4673 -28.7850 -39.5481 REMARK 3 T TENSOR REMARK 3 T11: -0.1995 T22: 0.3723 REMARK 3 T33: -0.0871 T12: -0.0771 REMARK 3 T13: -0.0725 T23: 0.1760 REMARK 3 L TENSOR REMARK 3 L11: 3.2728 L22: 1.9546 REMARK 3 L33: 2.0710 L12: -0.1040 REMARK 3 L13: 0.4407 L23: 0.1793 REMARK 3 S TENSOR REMARK 3 S11: -0.1592 S12: 0.5768 S13: 0.1549 REMARK 3 S21: -0.1445 S22: -0.0494 S23: 0.0143 REMARK 3 S31: -0.2224 S32: 0.3229 S33: 0.2087 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5MVG COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 16-JAN-17. REMARK 100 THE DEPOSITION ID IS D_1200003073. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 05-FEB-16 REMARK 200 TEMPERATURE (KELVIN) : 273 REMARK 200 PH : 4.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID29 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.873 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : IMOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 26134 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.200 REMARK 200 RESOLUTION RANGE LOW (A) : 57.700 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 10.90 REMARK 200 R MERGE (I) : 0.07700 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 26.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.20 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.27 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 11.10 REMARK 200 R MERGE FOR SHELL (I) : 0.53600 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 4.600 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 5M6I REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 54.80 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.72 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M MMT (MALIC ACID, MES AND TRIS REMARK 280 -BASE BUFFER) PH 4.0, 25% W/V PEG 1.5K, VAPOR DIFFUSION, SITTING REMARK 280 DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 31 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+2/3 REMARK 290 6555 -X,-X+Y,-Z+1/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 57.31767 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 114.63533 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 114.63533 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 57.31767 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2900 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 20300 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -20.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A 1 REMARK 465 SER A 2 REMARK 465 GLU A 3 REMARK 465 LEU A 4 REMARK 465 THR A 5 REMARK 465 GLN A 6 REMARK 465 ASP A 7 REMARK 465 PRO A 8 REMARK 465 ALA A 9 REMARK 465 TYR A 31 REMARK 465 ALA A 32 REMARK 465 SER A 33 REMARK 465 VAL A 46 REMARK 465 ILE A 47 REMARK 465 PHE A 61 REMARK 465 SER A 62 REMARK 465 ALA A 63 REMARK 465 SER A 64 REMARK 465 SER A 65 REMARK 465 SER A 66 REMARK 465 GLY A 67 REMARK 465 SER A 68 REMARK 465 THR A 69 REMARK 465 ASN A 88 REMARK 465 SER A 89 REMARK 465 ARG A 90 REMARK 465 ASP A 91 REMARK 465 ASN A 92 REMARK 465 SER A 93 REMARK 465 GLY A 94 REMARK 465 ASP A 95 REMARK 465 HIS A 96 REMARK 465 LEU A 97 REMARK 465 VAL A 98 REMARK 465 GLU A 212 REMARK 465 CYS A 213 REMARK 465 SER A 214 REMARK 465 SER B 1 REMARK 465 SER B 2 REMARK 465 GLU B 212 REMARK 465 CYS B 213 REMARK 465 SER B 214 REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 LEU A 27 CG CD1 CD2 REMARK 480 ARG A 28 CG CD NE CZ REMARK 480 MET A 29 CG SD CE REMARK 480 GLU A 50 CG CD OE1 OE2 REMARK 480 ARG A 53 CG CD NE CZ NH1 NH2 REMARK 480 ASP A 59 CB CG OD1 OD2 REMARK 480 ILE A 74 CG1 CG2 CD1 REMARK 480 GLN A 78 CG CD OE1 NE2 REMARK 480 ASP B 95 CG OD1 OD2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 26 -7.55 77.63 REMARK 500 ALA A 40 19.66 58.75 REMARK 500 GLU A 50 -61.37 63.33 REMARK 500 ASP A 153 -117.34 64.35 REMARK 500 GLU A 200 66.87 31.84 REMARK 500 GLU B 50 -51.20 65.58 REMARK 500 ALA B 83 -176.36 -173.71 REMARK 500 ASN B 92 -133.70 42.00 REMARK 500 ALA B 132 36.35 -143.36 REMARK 500 ASP B 153 -98.90 63.31 REMARK 500 GLU B 200 -120.82 54.99 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 514 DISTANCE = 5.96 ANGSTROMS REMARK 525 HOH A 515 DISTANCE = 6.28 ANGSTROMS REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 301 DBREF 5MVG A 1 214 PDB 5MVG 5MVG 1 214 DBREF 5MVG B 1 214 PDB 5MVG 5MVG 1 214 SEQRES 1 A 214 SER SER GLU LEU THR GLN ASP PRO ALA VAL SER VAL ALA SEQRES 2 A 214 LEU GLY GLN THR VAL LYS ILE THR CYS GLN GLY ASP SER SEQRES 3 A 214 LEU ARG MET TYR TYR ALA SER TRP TYR GLN GLN LYS PRO SEQRES 4 A 214 ALA GLN ALA PRO VAL LEU VAL ILE TYR ALA GLU LYS ASN SEQRES 5 A 214 ARG PRO SER GLY ILE PRO ASP ARG PHE SER ALA SER SER SEQRES 6 A 214 SER GLY SER THR ALA SER LEU THR ILE THR GLY ALA GLN SEQRES 7 A 214 ALA GLU ASP GLU ALA ASP TYR TYR CYS ASN SER ARG ASP SEQRES 8 A 214 ASN SER GLY ASP HIS LEU VAL PHE GLY GLY GLY THR LYS SEQRES 9 A 214 LEU THR VAL LEU GLY GLN PRO LYS ALA ALA PRO SER VAL SEQRES 10 A 214 THR LEU PHE PRO PRO SER SER GLU GLU LEU GLN ALA ASN SEQRES 11 A 214 LYS ALA THR LEU VAL CYS LEU ILE SER ASP PHE TYR PRO SEQRES 12 A 214 GLY ALA VAL THR VAL ALA TRP LYS ALA ASP SER SER PRO SEQRES 13 A 214 VAL LYS ALA GLY VAL GLU THR THR THR PRO SER LYS GLN SEQRES 14 A 214 SER ASN ASN LYS TYR ALA ALA SER SER TYR LEU SER LEU SEQRES 15 A 214 THR PRO GLU GLN TRP LYS SER HIS ARG SER TYR SER CYS SEQRES 16 A 214 GLN VAL THR HIS GLU GLY SER THR VAL GLU LYS THR VAL SEQRES 17 A 214 ALA PRO THR GLU CYS SER SEQRES 1 B 214 SER SER GLU LEU THR GLN ASP PRO ALA VAL SER VAL ALA SEQRES 2 B 214 LEU GLY GLN THR VAL LYS ILE THR CYS GLN GLY ASP SER SEQRES 3 B 214 LEU ARG MET TYR TYR ALA SER TRP TYR GLN GLN LYS PRO SEQRES 4 B 214 ALA GLN ALA PRO VAL LEU VAL ILE TYR ALA GLU LYS ASN SEQRES 5 B 214 ARG PRO SER GLY ILE PRO ASP ARG PHE SER ALA SER SER SEQRES 6 B 214 SER GLY SER THR ALA SER LEU THR ILE THR GLY ALA GLN SEQRES 7 B 214 ALA GLU ASP GLU ALA ASP TYR TYR CYS ASN SER ARG ASP SEQRES 8 B 214 ASN SER GLY ASP HIS LEU VAL PHE GLY GLY GLY THR LYS SEQRES 9 B 214 LEU THR VAL LEU GLY GLN PRO LYS ALA ALA PRO SER VAL SEQRES 10 B 214 THR LEU PHE PRO PRO SER SER GLU GLU LEU GLN ALA ASN SEQRES 11 B 214 LYS ALA THR LEU VAL CYS LEU ILE SER ASP PHE TYR PRO SEQRES 12 B 214 GLY ALA VAL THR VAL ALA TRP LYS ALA ASP SER SER PRO SEQRES 13 B 214 VAL LYS ALA GLY VAL GLU THR THR THR PRO SER LYS GLN SEQRES 14 B 214 SER ASN ASN LYS TYR ALA ALA SER SER TYR LEU SER LEU SEQRES 15 B 214 THR PRO GLU GLN TRP LYS SER HIS ARG SER TYR SER CYS SEQRES 16 B 214 GLN VAL THR HIS GLU GLY SER THR VAL GLU LYS THR VAL SEQRES 17 B 214 ALA PRO THR GLU CYS SER HET GOL A 301 6 HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 3 GOL C3 H8 O3 FORMUL 4 HOH *258(H2 O) HELIX 1 AA1 GLN A 78 GLU A 82 5 5 HELIX 2 AA2 SER A 123 ALA A 129 1 7 HELIX 3 AA3 THR A 183 HIS A 190 1 8 HELIX 4 AA4 ASP B 25 MET B 29 5 5 HELIX 5 AA5 GLN B 78 GLU B 82 5 5 HELIX 6 AA6 SER B 123 ALA B 129 1 7 HELIX 7 AA7 THR B 183 HIS B 190 1 8 SHEET 1 AA1 4 SER A 11 ALA A 13 0 SHEET 2 AA1 4 THR A 103 LEU A 108 1 O LEU A 108 N VAL A 12 SHEET 3 AA1 4 ALA A 83 TYR A 86 -1 N ALA A 83 O LEU A 105 SHEET 4 AA1 4 TYR A 35 GLN A 37 -1 N GLN A 37 O ASP A 84 SHEET 1 AA2 2 VAL A 18 THR A 21 0 SHEET 2 AA2 2 SER A 71 ILE A 74 -1 O LEU A 72 N ILE A 20 SHEET 1 AA3 4 SER A 116 PHE A 120 0 SHEET 2 AA3 4 ALA A 132 PHE A 141 -1 O VAL A 135 N PHE A 120 SHEET 3 AA3 4 TYR A 174 LEU A 182 -1 O SER A 178 N CYS A 136 SHEET 4 AA3 4 VAL A 161 THR A 163 -1 N GLU A 162 O TYR A 179 SHEET 1 AA4 4 SER A 116 PHE A 120 0 SHEET 2 AA4 4 ALA A 132 PHE A 141 -1 O VAL A 135 N PHE A 120 SHEET 3 AA4 4 TYR A 174 LEU A 182 -1 O SER A 178 N CYS A 136 SHEET 4 AA4 4 SER A 167 LYS A 168 -1 N SER A 167 O ALA A 175 SHEET 1 AA5 4 SER A 155 VAL A 157 0 SHEET 2 AA5 4 THR A 147 ALA A 152 -1 N ALA A 152 O SER A 155 SHEET 3 AA5 4 TYR A 193 HIS A 199 -1 O GLN A 196 N ALA A 149 SHEET 4 AA5 4 SER A 202 VAL A 208 -1 O SER A 202 N HIS A 199 SHEET 1 AA6 5 ALA B 9 ALA B 13 0 SHEET 2 AA6 5 THR B 103 LEU B 108 1 O LEU B 108 N VAL B 12 SHEET 3 AA6 5 ASP B 84 ARG B 90 -1 N TYR B 85 O THR B 103 SHEET 4 AA6 5 SER B 33 GLN B 37 -1 N TYR B 35 O TYR B 86 SHEET 5 AA6 5 VAL B 44 ILE B 47 -1 O VAL B 44 N GLN B 36 SHEET 1 AA7 4 ALA B 9 ALA B 13 0 SHEET 2 AA7 4 THR B 103 LEU B 108 1 O LEU B 108 N VAL B 12 SHEET 3 AA7 4 ASP B 84 ARG B 90 -1 N TYR B 85 O THR B 103 SHEET 4 AA7 4 LEU B 97 PHE B 99 -1 O VAL B 98 N SER B 89 SHEET 1 AA8 3 VAL B 18 GLN B 23 0 SHEET 2 AA8 3 THR B 69 ILE B 74 -1 O LEU B 72 N ILE B 20 SHEET 3 AA8 3 PHE B 61 SER B 66 -1 N SER B 62 O THR B 73 SHEET 1 AA9 4 SER B 116 PHE B 120 0 SHEET 2 AA9 4 LEU B 134 PHE B 141 -1 O SER B 139 N SER B 116 SHEET 3 AA9 4 TYR B 174 LEU B 180 -1 O SER B 178 N CYS B 136 SHEET 4 AA9 4 VAL B 161 THR B 163 -1 N GLU B 162 O TYR B 179 SHEET 1 AB1 4 SER B 116 PHE B 120 0 SHEET 2 AB1 4 LEU B 134 PHE B 141 -1 O SER B 139 N SER B 116 SHEET 3 AB1 4 TYR B 174 LEU B 180 -1 O SER B 178 N CYS B 136 SHEET 4 AB1 4 SER B 167 LYS B 168 -1 N SER B 167 O ALA B 175 SHEET 1 AB2 4 SER B 155 VAL B 157 0 SHEET 2 AB2 4 THR B 147 ALA B 152 -1 N TRP B 150 O VAL B 157 SHEET 3 AB2 4 TYR B 193 HIS B 199 -1 O GLN B 196 N ALA B 149 SHEET 4 AB2 4 SER B 202 VAL B 208 -1 O VAL B 204 N VAL B 197 SSBOND 1 CYS A 22 CYS A 87 1555 1555 2.03 SSBOND 2 CYS A 136 CYS A 195 1555 1555 2.01 SSBOND 3 CYS B 22 CYS B 87 1555 1555 2.02 SSBOND 4 CYS B 136 CYS B 195 1555 1555 2.03 CISPEP 1 TYR A 142 PRO A 143 0 -1.23 CISPEP 2 TYR B 142 PRO B 143 0 1.82 SITE 1 AC1 1 ALA A 70 CRYST1 70.721 70.721 171.953 90.00 90.00 120.00 P 31 2 1 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014140 0.008164 0.000000 0.00000 SCALE2 0.000000 0.016328 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005816 0.00000