data_5MWI # _entry.id 5MWI # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.383 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 5MWI pdb_00005mwi 10.2210/pdb5mwi/pdb WWPDB D_1200003095 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2017-03-08 2 'Structure model' 1 1 2017-04-05 3 'Structure model' 1 2 2017-06-14 4 'Structure model' 1 3 2024-01-17 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Database references' 2 3 'Structure model' 'Database references' 3 4 'Structure model' 'Data collection' 4 4 'Structure model' 'Database references' 5 4 'Structure model' 'Refinement description' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 3 'Structure model' citation 2 4 'Structure model' chem_comp_atom 3 4 'Structure model' chem_comp_bond 4 4 'Structure model' database_2 5 4 'Structure model' pdbx_initial_refinement_model # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 3 'Structure model' '_citation.country' 2 3 'Structure model' '_citation.journal_id_ASTM' 3 3 'Structure model' '_citation.journal_id_CSD' 4 3 'Structure model' '_citation.journal_volume' 5 3 'Structure model' '_citation.page_first' 6 3 'Structure model' '_citation.page_last' 7 4 'Structure model' '_database_2.pdbx_DOI' 8 4 'Structure model' '_database_2.pdbx_database_accession' # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 5MWI _pdbx_database_status.recvd_initial_deposition_date 2017-01-18 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site PDBE _pdbx_database_status.process_site PDBE _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data ? # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Kiliszek, A.' 1 ? 'Blaszczyk, L.' 2 ? 'Rypniewski, W.' 3 ? # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country UK _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev 'Nucleic Acids Res.' _citation.journal_id_ASTM NARHAD _citation.journal_id_CSD 0389 _citation.journal_id_ISSN 1362-4962 _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume 45 _citation.language ? _citation.page_first e92 _citation.page_last e92 _citation.title 'Stabilization of RNA hairpins using non-nucleotide linkers and circularization.' _citation.year 2017 _citation.database_id_CSD ? _citation.pdbx_database_id_DOI 10.1093/nar/gkx122 _citation.pdbx_database_id_PubMed 28334744 _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Kiliszek, A.' 1 ? primary 'Blaszczyk, L.' 2 ? primary 'Kierzek, R.' 3 ? primary 'Rypniewski, W.' 4 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn 'RNA G(CUG)8C duplex' 8257.858 1 ? ? ? ? 2 non-polymer syn 'SULFATE ION' 96.063 2 ? ? ? ? 3 water nat water 18.015 71 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type polyribonucleotide _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code GCUGCUGCUGCUGCUGCUGCUGCUGC _entity_poly.pdbx_seq_one_letter_code_can GCUGCUGCUGCUGCUGCUGCUGCUGC _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'SULFATE ION' SO4 3 water HOH # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 G n 1 2 C n 1 3 U n 1 4 G n 1 5 C n 1 6 U n 1 7 G n 1 8 C n 1 9 U n 1 10 G n 1 11 C n 1 12 U n 1 13 G n 1 14 C n 1 15 U n 1 16 G n 1 17 C n 1 18 U n 1 19 G n 1 20 C n 1 21 U n 1 22 G n 1 23 C n 1 24 U n 1 25 G n 1 26 C n # _pdbx_entity_src_syn.entity_id 1 _pdbx_entity_src_syn.pdbx_src_id 1 _pdbx_entity_src_syn.pdbx_alt_source_flag sample _pdbx_entity_src_syn.pdbx_beg_seq_num 1 _pdbx_entity_src_syn.pdbx_end_seq_num 26 _pdbx_entity_src_syn.organism_scientific 'Homo sapiens' _pdbx_entity_src_syn.organism_common_name human _pdbx_entity_src_syn.ncbi_taxonomy_id 9606 _pdbx_entity_src_syn.details ? # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight C 'RNA linking' y "CYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O8 P' 323.197 G 'RNA linking' y "GUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O8 P' 363.221 HOH non-polymer . WATER ? 'H2 O' 18.015 SO4 non-polymer . 'SULFATE ION' ? 'O4 S -2' 96.063 U 'RNA linking' y "URIDINE-5'-MONOPHOSPHATE" ? 'C9 H13 N2 O9 P' 324.181 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 G 1 1 1 G G A . n A 1 2 C 2 2 2 C C A . n A 1 3 U 3 3 3 U U A . n A 1 4 G 4 4 4 G G A . n A 1 5 C 5 5 5 C C A . n A 1 6 U 6 6 6 U U A . n A 1 7 G 7 7 7 G G A . n A 1 8 C 8 8 8 C C A . n A 1 9 U 9 9 9 U U A . n A 1 10 G 10 10 10 G G A . n A 1 11 C 11 11 11 C C A . n A 1 12 U 12 12 12 U U A . n A 1 13 G 13 13 13 G G A . n A 1 14 C 14 14 14 C C A . n A 1 15 U 15 15 15 U U A . n A 1 16 G 16 16 16 G G A . n A 1 17 C 17 17 17 C C A . n A 1 18 U 18 18 18 U U A . n A 1 19 G 19 19 19 G G A . n A 1 20 C 20 20 20 C C A . n A 1 21 U 21 21 21 U U A . n A 1 22 G 22 22 22 G G A . n A 1 23 C 23 23 23 C C A . n A 1 24 U 24 24 24 U U A . n A 1 25 G 25 25 25 G G A . n A 1 26 C 26 26 26 C C A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 SO4 1 101 1 SO4 SO4 A . C 2 SO4 1 102 2 SO4 SO4 A . D 3 HOH 1 201 70 HOH HOH A . D 3 HOH 2 202 50 HOH HOH A . D 3 HOH 3 203 30 HOH HOH A . D 3 HOH 4 204 49 HOH HOH A . D 3 HOH 5 205 35 HOH HOH A . D 3 HOH 6 206 65 HOH HOH A . D 3 HOH 7 207 15 HOH HOH A . D 3 HOH 8 208 4 HOH HOH A . D 3 HOH 9 209 51 HOH HOH A . D 3 HOH 10 210 8 HOH HOH A . D 3 HOH 11 211 45 HOH HOH A . D 3 HOH 12 212 1 HOH HOH A . D 3 HOH 13 213 62 HOH HOH A . D 3 HOH 14 214 40 HOH HOH A . D 3 HOH 15 215 24 HOH HOH A . D 3 HOH 16 216 29 HOH HOH A . D 3 HOH 17 217 38 HOH HOH A . D 3 HOH 18 218 11 HOH HOH A . D 3 HOH 19 219 37 HOH HOH A . D 3 HOH 20 220 5 HOH HOH A . D 3 HOH 21 221 33 HOH HOH A . D 3 HOH 22 222 32 HOH HOH A . D 3 HOH 23 223 3 HOH HOH A . D 3 HOH 24 224 66 HOH HOH A . D 3 HOH 25 225 52 HOH HOH A . D 3 HOH 26 226 20 HOH HOH A . D 3 HOH 27 227 43 HOH HOH A . D 3 HOH 28 228 44 HOH HOH A . D 3 HOH 29 229 41 HOH HOH A . D 3 HOH 30 230 2 HOH HOH A . D 3 HOH 31 231 31 HOH HOH A . D 3 HOH 32 232 63 HOH HOH A . D 3 HOH 33 233 27 HOH HOH A . D 3 HOH 34 234 7 HOH HOH A . D 3 HOH 35 235 21 HOH HOH A . D 3 HOH 36 236 9 HOH HOH A . D 3 HOH 37 237 53 HOH HOH A . D 3 HOH 38 238 28 HOH HOH A . D 3 HOH 39 239 34 HOH HOH A . D 3 HOH 40 240 25 HOH HOH A . D 3 HOH 41 241 36 HOH HOH A . D 3 HOH 42 242 13 HOH HOH A . D 3 HOH 43 243 12 HOH HOH A . D 3 HOH 44 244 6 HOH HOH A . D 3 HOH 45 245 54 HOH HOH A . D 3 HOH 46 246 16 HOH HOH A . D 3 HOH 47 247 18 HOH HOH A . D 3 HOH 48 248 23 HOH HOH A . D 3 HOH 49 249 10 HOH HOH A . D 3 HOH 50 250 14 HOH HOH A . D 3 HOH 51 251 55 HOH HOH A . D 3 HOH 52 252 17 HOH HOH A . D 3 HOH 53 253 26 HOH HOH A . D 3 HOH 54 254 67 HOH HOH A . D 3 HOH 55 255 19 HOH HOH A . D 3 HOH 56 256 22 HOH HOH A . D 3 HOH 57 257 59 HOH HOH A . D 3 HOH 58 258 46 HOH HOH A . D 3 HOH 59 259 56 HOH HOH A . D 3 HOH 60 260 39 HOH HOH A . D 3 HOH 61 261 71 HOH HOH A . D 3 HOH 62 262 42 HOH HOH A . D 3 HOH 63 263 48 HOH HOH A . D 3 HOH 64 264 57 HOH HOH A . D 3 HOH 65 265 58 HOH HOH A . D 3 HOH 66 266 69 HOH HOH A . D 3 HOH 67 267 47 HOH HOH A . D 3 HOH 68 268 61 HOH HOH A . D 3 HOH 69 269 60 HOH HOH A . D 3 HOH 70 270 68 HOH HOH A . D 3 HOH 71 271 64 HOH HOH A . # loop_ _software.citation_id _software.classification _software.compiler_name _software.compiler_version _software.contact_author _software.contact_author_email _software.date _software.description _software.dependencies _software.hardware _software.language _software.location _software.mods _software.name _software.os _software.os_version _software.type _software.version _software.pdbx_ordinal ? refinement ? ? ? ? ? ? ? ? ? ? ? REFMAC ? ? ? 5.8.0135 1 ? 'data reduction' ? ? ? ? ? ? ? ? ? ? ? XDS ? ? ? . 2 ? 'data scaling' ? ? ? ? ? ? ? ? ? ? ? XDS ? ? ? . 3 ? phasing ? ? ? ? ? ? ? ? ? ? ? PHASER ? ? ? . 4 # _cell.angle_alpha 90.00 _cell.angle_alpha_esd ? _cell.angle_beta 90.00 _cell.angle_beta_esd ? _cell.angle_gamma 120.00 _cell.angle_gamma_esd ? _cell.entry_id 5MWI _cell.details ? _cell.formula_units_Z ? _cell.length_a 43.514 _cell.length_a_esd ? _cell.length_b 43.514 _cell.length_b_esd ? _cell.length_c 198.101 _cell.length_c_esd ? _cell.volume ? _cell.volume_esd ? _cell.Z_PDB 18 _cell.reciprocal_angle_alpha ? _cell.reciprocal_angle_beta ? _cell.reciprocal_angle_gamma ? _cell.reciprocal_angle_alpha_esd ? _cell.reciprocal_angle_beta_esd ? _cell.reciprocal_angle_gamma_esd ? _cell.reciprocal_length_a ? _cell.reciprocal_length_b ? _cell.reciprocal_length_c ? _cell.reciprocal_length_a_esd ? _cell.reciprocal_length_b_esd ? _cell.reciprocal_length_c_esd ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 5MWI _symmetry.cell_setting ? _symmetry.Int_Tables_number 155 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'H 3 2' _symmetry.pdbx_full_space_group_name_H-M ? # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 5MWI _exptl.crystals_number 1 _exptl.details ? _exptl.method 'X-RAY DIFFRACTION' _exptl.method_details ? # _exptl_crystal.colour ? _exptl_crystal.density_diffrn ? _exptl_crystal.density_Matthews 2.19 _exptl_crystal.density_method ? _exptl_crystal.density_percent_sol 43.72 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.id 1 _exptl_crystal.preparation ? _exptl_crystal.size_max ? _exptl_crystal.size_mid ? _exptl_crystal.size_min ? _exptl_crystal.size_rad ? _exptl_crystal.colour_lustre ? _exptl_crystal.colour_modifier ? _exptl_crystal.colour_primary ? _exptl_crystal.density_meas ? _exptl_crystal.density_meas_esd ? _exptl_crystal.density_meas_gt ? _exptl_crystal.density_meas_lt ? _exptl_crystal.density_meas_temp ? _exptl_crystal.density_meas_temp_esd ? _exptl_crystal.density_meas_temp_gt ? _exptl_crystal.density_meas_temp_lt ? _exptl_crystal.pdbx_crystal_image_url ? _exptl_crystal.pdbx_crystal_image_format ? _exptl_crystal.pdbx_mosaicity ? _exptl_crystal.pdbx_mosaicity_esd ? # _exptl_crystal_grow.apparatus ? _exptl_crystal_grow.atmosphere ? _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.details ? _exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.method_ref ? _exptl_crystal_grow.pH 6.5 _exptl_crystal_grow.pressure ? _exptl_crystal_grow.pressure_esd ? _exptl_crystal_grow.seeding ? _exptl_crystal_grow.seeding_ref ? _exptl_crystal_grow.temp 292 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.temp_esd ? _exptl_crystal_grow.time ? _exptl_crystal_grow.pdbx_details 'magnesium acetate, cacodylate and lithium sulfate' _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.ambient_environment ? _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.ambient_temp_esd ? _diffrn.crystal_id 1 _diffrn.crystal_support ? _diffrn.crystal_treatment ? _diffrn.details ? _diffrn.id 1 _diffrn.ambient_pressure ? _diffrn.ambient_pressure_esd ? _diffrn.ambient_pressure_gt ? _diffrn.ambient_pressure_lt ? _diffrn.ambient_temp_gt ? _diffrn.ambient_temp_lt ? # _diffrn_detector.details ? _diffrn_detector.detector CCD _diffrn_detector.diffrn_id 1 _diffrn_detector.type 'RAYONIX MX-225' _diffrn_detector.area_resol_mean ? _diffrn_detector.dtime ? _diffrn_detector.pdbx_frames_total ? _diffrn_detector.pdbx_collection_time_total ? _diffrn_detector.pdbx_collection_date 2014-02-18 # _diffrn_radiation.collimation ? _diffrn_radiation.diffrn_id 1 _diffrn_radiation.filter_edge ? _diffrn_radiation.inhomogeneity ? _diffrn_radiation.monochromator ? _diffrn_radiation.polarisn_norm ? _diffrn_radiation.polarisn_ratio ? _diffrn_radiation.probe ? _diffrn_radiation.type ? _diffrn_radiation.xray_symbol ? _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_wavelength_list ? _diffrn_radiation.pdbx_wavelength ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_analyzer ? _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.91841 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.current ? _diffrn_source.details ? _diffrn_source.diffrn_id 1 _diffrn_source.power ? _diffrn_source.size ? _diffrn_source.source SYNCHROTRON _diffrn_source.target ? _diffrn_source.type 'BESSY BEAMLINE 14.2' _diffrn_source.voltage ? _diffrn_source.take-off_angle ? _diffrn_source.pdbx_wavelength_list 0.91841 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_beamline 14.2 _diffrn_source.pdbx_synchrotron_site BESSY # _reflns.B_iso_Wilson_estimate 25 _reflns.entry_id 5MWI _reflns.data_reduction_details ? _reflns.data_reduction_method ? _reflns.d_resolution_high 1.51 _reflns.d_resolution_low 50 _reflns.details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.number_all ? _reflns.number_obs 11846 _reflns.observed_criterion ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.observed_criterion_I_max ? _reflns.observed_criterion_I_min ? _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I ? _reflns.percent_possible_obs 99.9 _reflns.R_free_details ? _reflns.Rmerge_F_all ? _reflns.Rmerge_F_obs ? _reflns.Friedel_coverage ? _reflns.number_gt ? _reflns.threshold_expression ? _reflns.pdbx_redundancy 7.4 _reflns.pdbx_Rmerge_I_obs 0.045 _reflns.pdbx_Rmerge_I_all ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_av_sigmaI ? _reflns.pdbx_netI_over_sigmaI 21.8 _reflns.pdbx_res_netI_over_av_sigmaI_2 ? _reflns.pdbx_res_netI_over_sigmaI_2 ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_d_res_high_opt ? _reflns.pdbx_d_res_low_opt ? _reflns.pdbx_d_res_opt_method ? _reflns.phase_calculation_details ? _reflns.pdbx_Rrim_I_all ? _reflns.pdbx_Rpim_I_all ? _reflns.pdbx_d_opt ? _reflns.pdbx_number_measured_all ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.pdbx_CC_half 0.99 _reflns.pdbx_R_split ? # _reflns_shell.d_res_high 1.51 _reflns_shell.d_res_low 1.60 _reflns_shell.meanI_over_sigI_all ? _reflns_shell.meanI_over_sigI_obs 2.1 _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_possible ? _reflns_shell.number_unique_all ? _reflns_shell.number_unique_obs 1865 _reflns_shell.percent_possible_all 99.8 _reflns_shell.percent_possible_obs ? _reflns_shell.Rmerge_F_all ? _reflns_shell.Rmerge_F_obs ? _reflns_shell.Rmerge_I_all ? _reflns_shell.Rmerge_I_obs ? _reflns_shell.meanI_over_sigI_gt ? _reflns_shell.meanI_over_uI_all ? _reflns_shell.meanI_over_uI_gt ? _reflns_shell.number_measured_gt ? _reflns_shell.number_unique_gt ? _reflns_shell.percent_possible_gt ? _reflns_shell.Rmerge_F_gt ? _reflns_shell.Rmerge_I_gt ? _reflns_shell.pdbx_redundancy 7.2 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_netI_over_sigmaI_all ? _reflns_shell.pdbx_netI_over_sigmaI_obs ? _reflns_shell.pdbx_Rrim_I_all ? _reflns_shell.pdbx_Rpim_I_all ? _reflns_shell.pdbx_rejects ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 _reflns_shell.pdbx_CC_half 0.8 _reflns_shell.pdbx_R_split ? # _refine.aniso_B[1][1] -1.30 _refine.aniso_B[1][2] -0.65 _refine.aniso_B[1][3] -0.00 _refine.aniso_B[2][2] -1.30 _refine.aniso_B[2][3] -0.00 _refine.aniso_B[3][3] 4.20 _refine.B_iso_max ? _refine.B_iso_mean 28.937 _refine.B_iso_min ? _refine.correlation_coeff_Fo_to_Fc 0.973 _refine.correlation_coeff_Fo_to_Fc_free 0.956 _refine.details 'HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS' _refine.diff_density_max ? _refine.diff_density_max_esd ? _refine.diff_density_min ? _refine.diff_density_min_esd ? _refine.diff_density_rms ? _refine.diff_density_rms_esd ? _refine.entry_id 5MWI _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.ls_abs_structure_details ? _refine.ls_abs_structure_Flack ? _refine.ls_abs_structure_Flack_esd ? _refine.ls_abs_structure_Rogers ? _refine.ls_abs_structure_Rogers_esd ? _refine.ls_d_res_high 1.51 _refine.ls_d_res_low 37.02 _refine.ls_extinction_coef ? _refine.ls_extinction_coef_esd ? _refine.ls_extinction_expression ? _refine.ls_extinction_method ? _refine.ls_goodness_of_fit_all ? _refine.ls_goodness_of_fit_all_esd ? _refine.ls_goodness_of_fit_obs ? _refine.ls_goodness_of_fit_obs_esd ? _refine.ls_hydrogen_treatment ? _refine.ls_matrix_type ? _refine.ls_number_constraints ? _refine.ls_number_parameters ? _refine.ls_number_reflns_all ? _refine.ls_number_reflns_obs 11249 _refine.ls_number_reflns_R_free 593 _refine.ls_number_reflns_R_work ? _refine.ls_number_restraints ? _refine.ls_percent_reflns_obs 99.89 _refine.ls_percent_reflns_R_free 5.0 _refine.ls_R_factor_all ? _refine.ls_R_factor_obs 0.19488 _refine.ls_R_factor_R_free 0.25621 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_R_factor_R_work 0.19171 _refine.ls_R_Fsqd_factor_obs ? _refine.ls_R_I_factor_obs ? _refine.ls_redundancy_reflns_all ? _refine.ls_redundancy_reflns_obs ? _refine.ls_restrained_S_all ? _refine.ls_restrained_S_obs ? _refine.ls_shift_over_esd_max ? _refine.ls_shift_over_esd_mean ? _refine.ls_structure_factor_coef ? _refine.ls_weighting_details ? _refine.ls_weighting_scheme ? _refine.ls_wR_factor_all ? _refine.ls_wR_factor_obs ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.occupancy_max ? _refine.occupancy_min ? _refine.solvent_model_details ? _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.ls_R_factor_gt ? _refine.ls_goodness_of_fit_gt ? _refine.ls_goodness_of_fit_ref ? _refine.ls_shift_over_su_max ? _refine.ls_shift_over_su_max_lt ? _refine.ls_shift_over_su_mean ? _refine.ls_shift_over_su_mean_lt ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F ? _refine.pdbx_ls_sigma_Fsqd ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_starting_model 4E48 _refine.pdbx_stereochemistry_target_values ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_overall_ESU_R 0.105 _refine.pdbx_overall_ESU_R_Free 0.096 _refine.pdbx_solvent_vdw_probe_radii 1.20 _refine.pdbx_solvent_ion_probe_radii 0.80 _refine.pdbx_solvent_shrinkage_radii 0.80 _refine.pdbx_real_space_R ? _refine.pdbx_density_correlation ? _refine.pdbx_pd_number_of_powder_patterns ? _refine.pdbx_pd_number_of_points ? _refine.pdbx_pd_meas_number_of_points ? _refine.pdbx_pd_proc_ls_prof_R_factor ? _refine.pdbx_pd_proc_ls_prof_wR_factor ? _refine.pdbx_pd_Marquardt_correlation_coeff ? _refine.pdbx_pd_Fsqrd_R_factor ? _refine.pdbx_pd_ls_matrix_band_width ? _refine.pdbx_overall_phase_error ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_diffrn_id 1 _refine.overall_SU_B 6.573 _refine.overall_SU_ML 0.099 _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_average_fsc_overall ? _refine.pdbx_average_fsc_work ? _refine.pdbx_average_fsc_free ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id 1 _refine_hist.pdbx_number_atoms_protein 0 _refine_hist.pdbx_number_atoms_nucleic_acid 544 _refine_hist.pdbx_number_atoms_ligand 10 _refine_hist.number_atoms_solvent 71 _refine_hist.number_atoms_total 625 _refine_hist.d_res_high 1.51 _refine_hist.d_res_low 37.02 # loop_ _refine_ls_restr.pdbx_refine_id _refine_ls_restr.criterion _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.number _refine_ls_restr.rejects _refine_ls_restr.type _refine_ls_restr.weight _refine_ls_restr.pdbx_restraint_function 'X-RAY DIFFRACTION' ? 0.017 0.011 658 ? r_bond_refined_d ? ? 'X-RAY DIFFRACTION' ? 0.003 0.020 271 ? r_bond_other_d ? ? 'X-RAY DIFFRACTION' ? 2.128 1.310 1027 ? r_angle_refined_deg ? ? 'X-RAY DIFFRACTION' ? 1.903 3.000 663 ? r_angle_other_deg ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_dihedral_angle_1_deg ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_dihedral_angle_2_deg ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_dihedral_angle_3_deg ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_dihedral_angle_4_deg ? ? 'X-RAY DIFFRACTION' ? 0.099 0.200 114 ? r_chiral_restr ? ? 'X-RAY DIFFRACTION' ? 0.025 0.020 313 ? r_gen_planes_refined ? ? 'X-RAY DIFFRACTION' ? 0.016 0.020 136 ? r_gen_planes_other ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_nbd_refined ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_nbd_other ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_nbtor_refined ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_nbtor_other ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_xyhbond_nbd_refined ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_xyhbond_nbd_other ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_metal_ion_refined ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_metal_ion_other ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_symmetry_vdw_refined ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_symmetry_vdw_other ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_symmetry_hbond_refined ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_symmetry_hbond_other ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_symmetry_metal_ion_refined ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_symmetry_metal_ion_other ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_mcbond_it ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_mcbond_other ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_mcangle_it ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_mcangle_other ? ? 'X-RAY DIFFRACTION' ? 5.078 2.947 657 ? r_scbond_it ? ? 'X-RAY DIFFRACTION' ? 5.067 2.940 648 ? r_scbond_other ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_scangle_it ? ? 'X-RAY DIFFRACTION' ? 5.951 4.446 1015 ? r_scangle_other ? ? 'X-RAY DIFFRACTION' ? 5.982 29.906 847 ? r_long_range_B_refined ? ? 'X-RAY DIFFRACTION' ? 6.016 29.688 820 ? r_long_range_B_other ? ? 'X-RAY DIFFRACTION' ? 5.539 3.000 928 ? r_rigid_bond_restr ? ? 'X-RAY DIFFRACTION' ? 34.954 5.000 22 ? r_sphericity_free ? ? 'X-RAY DIFFRACTION' ? 21.028 5.000 914 ? r_sphericity_bonded ? ? # _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_ls_shell.d_res_high 1.510 _refine_ls_shell.d_res_low 1.549 _refine_ls_shell.number_reflns_all ? _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.number_reflns_R_free 42 _refine_ls_shell.number_reflns_R_work 791 _refine_ls_shell.percent_reflns_obs 99.64 _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.R_factor_all ? _refine_ls_shell.R_factor_obs ? _refine_ls_shell.R_factor_R_free 0.546 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.R_factor_R_work 0.382 _refine_ls_shell.redundancy_reflns_all ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.wR_factor_all ? _refine_ls_shell.wR_factor_obs ? _refine_ls_shell.wR_factor_R_free ? _refine_ls_shell.wR_factor_R_work ? _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.pdbx_phase_error ? _refine_ls_shell.pdbx_fsc_work ? _refine_ls_shell.pdbx_fsc_free ? # _struct.entry_id 5MWI _struct.title 'Crystal structure of G(CUG)8G duplex' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 5MWI _struct_keywords.text 'CUG repeats, RNA, duplex' _struct_keywords.pdbx_keywords RNA # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 2 ? D N N 3 ? # _struct_ref.id 1 _struct_ref.db_name PDB _struct_ref.db_code 5MWI _struct_ref.pdbx_db_accession 5MWI _struct_ref.pdbx_db_isoform ? _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_align_begin 1 # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 5MWI _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 26 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession 5MWI _struct_ref_seq.db_align_beg 1 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 26 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 26 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 3470 ? 1 MORE -89 ? 1 'SSA (A^2)' 9220 ? # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 2 'crystal symmetry operation' 4_555 y,x,-z -0.5000000000 0.8660254038 0.0000000000 0.0000000000 0.8660254038 0.5000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 0.0000000000 # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role hydrog1 hydrog ? ? A G 1 N1 ? ? ? 1_555 A C 26 N3 ? ? A G 1 A C 26 4_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? A G 1 N2 ? ? ? 1_555 A C 26 O2 ? ? A G 1 A C 26 4_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? A G 1 O6 ? ? ? 1_555 A C 26 N4 ? ? A G 1 A C 26 4_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? A C 2 N3 ? ? ? 1_555 A G 25 N1 ? ? A C 2 A G 25 4_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? A C 2 N4 ? ? ? 1_555 A G 25 O6 ? ? A C 2 A G 25 4_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? A C 2 O2 ? ? ? 1_555 A G 25 N2 ? ? A C 2 A G 25 4_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? A U 3 N3 ? ? ? 1_555 A U 24 O2 ? ? A U 3 A U 24 4_555 ? ? ? ? ? ? TYPE_16_PAIR ? ? ? hydrog8 hydrog ? ? A U 3 O4 ? ? ? 1_555 A U 24 N3 ? ? A U 3 A U 24 4_555 ? ? ? ? ? ? TYPE_16_PAIR ? ? ? hydrog9 hydrog ? ? A G 4 N1 ? ? ? 1_555 A C 23 N3 ? ? A G 4 A C 23 4_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? A G 4 N2 ? ? ? 1_555 A C 23 O2 ? ? A G 4 A C 23 4_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? A G 4 O6 ? ? ? 1_555 A C 23 N4 ? ? A G 4 A C 23 4_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? A C 5 N3 ? ? ? 1_555 A G 22 N1 ? ? A C 5 A G 22 4_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? A C 5 N4 ? ? ? 1_555 A G 22 O6 ? ? A C 5 A G 22 4_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? A C 5 O2 ? ? ? 1_555 A G 22 N2 ? ? A C 5 A G 22 4_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? A U 6 O4 ? ? ? 1_555 A U 21 N3 ? ? A U 6 A U 21 4_555 ? ? ? ? ? ? 'U-U MISPAIR' ? ? ? hydrog16 hydrog ? ? A G 7 N1 ? ? ? 1_555 A C 20 N3 ? ? A G 7 A C 20 4_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog17 hydrog ? ? A G 7 N2 ? ? ? 1_555 A C 20 O2 ? ? A G 7 A C 20 4_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog18 hydrog ? ? A G 7 O6 ? ? ? 1_555 A C 20 N4 ? ? A G 7 A C 20 4_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog19 hydrog ? ? A C 8 N3 ? ? ? 1_555 A G 19 N1 ? ? A C 8 A G 19 4_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog20 hydrog ? ? A C 8 N4 ? ? ? 1_555 A G 19 O6 ? ? A C 8 A G 19 4_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog21 hydrog ? ? A C 8 O2 ? ? ? 1_555 A G 19 N2 ? ? A C 8 A G 19 4_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog22 hydrog ? ? A U 9 O4 ? ? ? 1_555 A U 18 N3 ? ? A U 9 A U 18 4_555 ? ? ? ? ? ? 'U-U MISPAIR' ? ? ? hydrog23 hydrog ? ? A G 10 N1 ? ? ? 1_555 A C 17 N3 ? ? A G 10 A C 17 4_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog24 hydrog ? ? A G 10 N2 ? ? ? 1_555 A C 17 O2 ? ? A G 10 A C 17 4_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog25 hydrog ? ? A G 10 O6 ? ? ? 1_555 A C 17 N4 ? ? A G 10 A C 17 4_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog26 hydrog ? ? A C 11 N3 ? ? ? 1_555 A G 16 N1 ? ? A C 11 A G 16 4_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog27 hydrog ? ? A C 11 N4 ? ? ? 1_555 A G 16 O6 ? ? A C 11 A G 16 4_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog28 hydrog ? ? A C 11 O2 ? ? ? 1_555 A G 16 N2 ? ? A C 11 A G 16 4_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog29 hydrog ? ? A U 12 N3 B ? ? 1_555 A U 15 O4 B ? A U 12 A U 15 4_555 ? ? ? ? ? ? TYPE_12_PAIR ? ? ? hydrog30 hydrog ? ? A U 12 O4 A ? ? 1_555 A U 15 N3 A ? A U 12 A U 15 4_555 ? ? ? ? ? ? TYPE_12_PAIR ? ? ? hydrog31 hydrog ? ? A G 13 N1 ? ? ? 1_555 A C 14 N3 ? ? A G 13 A C 14 4_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog32 hydrog ? ? A G 13 N2 ? ? ? 1_555 A C 14 O2 ? ? A G 13 A C 14 4_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog33 hydrog ? ? A G 13 O6 ? ? ? 1_555 A C 14 N4 ? ? A G 13 A C 14 4_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog34 hydrog ? ? A C 14 N3 ? ? ? 1_555 A G 13 N1 ? ? A C 14 A G 13 4_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog35 hydrog ? ? A C 14 N4 ? ? ? 1_555 A G 13 O6 ? ? A C 14 A G 13 4_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog36 hydrog ? ? A C 14 O2 ? ? ? 1_555 A G 13 N2 ? ? A C 14 A G 13 4_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog37 hydrog ? ? A U 15 N3 A ? ? 1_555 A U 12 O4 A ? A U 15 A U 12 4_555 ? ? ? ? ? ? TYPE_12_PAIR ? ? ? hydrog38 hydrog ? ? A U 15 O4 B ? ? 1_555 A U 12 N3 B ? A U 15 A U 12 4_555 ? ? ? ? ? ? TYPE_12_PAIR ? ? ? hydrog39 hydrog ? ? A G 16 N1 ? ? ? 1_555 A C 11 N3 ? ? A G 16 A C 11 4_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog40 hydrog ? ? A G 16 N2 ? ? ? 1_555 A C 11 O2 ? ? A G 16 A C 11 4_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog41 hydrog ? ? A G 16 O6 ? ? ? 1_555 A C 11 N4 ? ? A G 16 A C 11 4_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog42 hydrog ? ? A C 17 N3 ? ? ? 1_555 A G 10 N1 ? ? A C 17 A G 10 4_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog43 hydrog ? ? A C 17 N4 ? ? ? 1_555 A G 10 O6 ? ? A C 17 A G 10 4_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog44 hydrog ? ? A C 17 O2 ? ? ? 1_555 A G 10 N2 ? ? A C 17 A G 10 4_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog45 hydrog ? ? A U 18 N3 ? ? ? 1_555 A U 9 O4 ? ? A U 18 A U 9 4_555 ? ? ? ? ? ? 'U-U MISPAIR' ? ? ? hydrog46 hydrog ? ? A G 19 N1 ? ? ? 1_555 A C 8 N3 ? ? A G 19 A C 8 4_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog47 hydrog ? ? A G 19 N2 ? ? ? 1_555 A C 8 O2 ? ? A G 19 A C 8 4_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog48 hydrog ? ? A G 19 O6 ? ? ? 1_555 A C 8 N4 ? ? A G 19 A C 8 4_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog49 hydrog ? ? A C 20 N3 ? ? ? 1_555 A G 7 N1 ? ? A C 20 A G 7 4_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog50 hydrog ? ? A C 20 N4 ? ? ? 1_555 A G 7 O6 ? ? A C 20 A G 7 4_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog51 hydrog ? ? A C 20 O2 ? ? ? 1_555 A G 7 N2 ? ? A C 20 A G 7 4_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog52 hydrog ? ? A U 21 N3 ? ? ? 1_555 A U 6 O4 ? ? A U 21 A U 6 4_555 ? ? ? ? ? ? 'U-U MISPAIR' ? ? ? hydrog53 hydrog ? ? A G 22 N1 ? ? ? 1_555 A C 5 N3 ? ? A G 22 A C 5 4_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog54 hydrog ? ? A G 22 N2 ? ? ? 1_555 A C 5 O2 ? ? A G 22 A C 5 4_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog55 hydrog ? ? A G 22 O6 ? ? ? 1_555 A C 5 N4 ? ? A G 22 A C 5 4_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog56 hydrog ? ? A C 23 N3 ? ? ? 1_555 A G 4 N1 ? ? A C 23 A G 4 4_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog57 hydrog ? ? A C 23 N4 ? ? ? 1_555 A G 4 O6 ? ? A C 23 A G 4 4_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog58 hydrog ? ? A C 23 O2 ? ? ? 1_555 A G 4 N2 ? ? A C 23 A G 4 4_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog59 hydrog ? ? A U 24 N3 ? ? ? 1_555 A U 3 O4 ? ? A U 24 A U 3 4_555 ? ? ? ? ? ? TYPE_16_PAIR ? ? ? hydrog60 hydrog ? ? A U 24 O2 ? ? ? 1_555 A U 3 N3 ? ? A U 24 A U 3 4_555 ? ? ? ? ? ? TYPE_16_PAIR ? ? ? hydrog61 hydrog ? ? A G 25 N1 ? ? ? 1_555 A C 2 N3 ? ? A G 25 A C 2 4_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog62 hydrog ? ? A G 25 N2 ? ? ? 1_555 A C 2 O2 ? ? A G 25 A C 2 4_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog63 hydrog ? ? A G 25 O6 ? ? ? 1_555 A C 2 N4 ? ? A G 25 A C 2 4_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog64 hydrog ? ? A C 26 N3 ? ? ? 1_555 A G 1 N1 ? ? A C 26 A G 1 4_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog65 hydrog ? ? A C 26 N4 ? ? ? 1_555 A G 1 O6 ? ? A C 26 A G 1 4_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog66 hydrog ? ? A C 26 O2 ? ? ? 1_555 A G 1 N2 ? ? A C 26 A G 1 4_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? # _struct_conn_type.id hydrog _struct_conn_type.criteria ? _struct_conn_type.reference ? # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software A SO4 101 ? 7 'binding site for residue SO4 A 101' AC2 Software A SO4 102 ? 5 'binding site for residue SO4 A 102' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 7 G A 4 ? G A 4 . ? 1_555 ? 2 AC1 7 C A 5 ? C A 5 . ? 1_555 ? 3 AC1 7 U A 21 ? U A 21 . ? 4_555 ? 4 AC1 7 G A 22 ? G A 22 . ? 4_555 ? 5 AC1 7 C A 23 ? C A 23 . ? 4_555 ? 6 AC1 7 HOH D . ? HOH A 202 . ? 1_555 ? 7 AC1 7 HOH D . ? HOH A 228 . ? 4_555 ? 8 AC2 5 G A 1 ? G A 1 . ? 1_555 ? 9 AC2 5 U A 24 ? U A 24 . ? 4_555 ? 10 AC2 5 HOH D . ? HOH A 201 . ? 1_555 ? 11 AC2 5 HOH D . ? HOH A 216 . ? 12_555 ? 12 AC2 5 HOH D . ? HOH A 217 . ? 4_555 ? # _pdbx_validate_close_contact.id 1 _pdbx_validate_close_contact.PDB_model_num 1 _pdbx_validate_close_contact.auth_atom_id_1 O _pdbx_validate_close_contact.auth_asym_id_1 A _pdbx_validate_close_contact.auth_comp_id_1 HOH _pdbx_validate_close_contact.auth_seq_id_1 212 _pdbx_validate_close_contact.PDB_ins_code_1 ? _pdbx_validate_close_contact.label_alt_id_1 ? _pdbx_validate_close_contact.auth_atom_id_2 O _pdbx_validate_close_contact.auth_asym_id_2 A _pdbx_validate_close_contact.auth_comp_id_2 HOH _pdbx_validate_close_contact.auth_seq_id_2 265 _pdbx_validate_close_contact.PDB_ins_code_2 ? _pdbx_validate_close_contact.label_alt_id_2 ? _pdbx_validate_close_contact.dist 1.95 # loop_ _pdbx_validate_rmsd_bond.id _pdbx_validate_rmsd_bond.PDB_model_num _pdbx_validate_rmsd_bond.auth_atom_id_1 _pdbx_validate_rmsd_bond.auth_asym_id_1 _pdbx_validate_rmsd_bond.auth_comp_id_1 _pdbx_validate_rmsd_bond.auth_seq_id_1 _pdbx_validate_rmsd_bond.PDB_ins_code_1 _pdbx_validate_rmsd_bond.label_alt_id_1 _pdbx_validate_rmsd_bond.auth_atom_id_2 _pdbx_validate_rmsd_bond.auth_asym_id_2 _pdbx_validate_rmsd_bond.auth_comp_id_2 _pdbx_validate_rmsd_bond.auth_seq_id_2 _pdbx_validate_rmsd_bond.PDB_ins_code_2 _pdbx_validate_rmsd_bond.label_alt_id_2 _pdbx_validate_rmsd_bond.bond_value _pdbx_validate_rmsd_bond.bond_target_value _pdbx_validate_rmsd_bond.bond_deviation _pdbx_validate_rmsd_bond.bond_standard_deviation _pdbx_validate_rmsd_bond.linker_flag 1 1 "O5'" A U 12 ? A "C5'" A U 12 ? A 1.359 1.420 -0.061 0.009 N 2 1 "O3'" A C 17 ? ? P A U 18 ? ? 1.682 1.607 0.075 0.012 Y 3 1 "O3'" A U 24 ? ? P A G 25 ? ? 1.685 1.607 0.078 0.012 Y # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 "O5'" A C 17 ? ? P A C 17 ? ? OP2 A C 17 ? ? 99.25 105.70 -6.45 0.90 N 2 1 "O5'" A U 18 ? ? P A U 18 ? ? OP2 A U 18 ? ? 98.58 105.70 -7.12 0.90 N # loop_ _pdbx_struct_special_symmetry.id _pdbx_struct_special_symmetry.PDB_model_num _pdbx_struct_special_symmetry.auth_asym_id _pdbx_struct_special_symmetry.auth_comp_id _pdbx_struct_special_symmetry.auth_seq_id _pdbx_struct_special_symmetry.PDB_ins_code _pdbx_struct_special_symmetry.label_asym_id _pdbx_struct_special_symmetry.label_comp_id _pdbx_struct_special_symmetry.label_seq_id 1 1 A HOH 229 ? D HOH . 2 1 A HOH 233 ? D HOH . 3 1 A HOH 239 ? D HOH . 4 1 A HOH 270 ? D HOH . 5 1 A HOH 271 ? D HOH . # _pdbx_distant_solvent_atoms.id 1 _pdbx_distant_solvent_atoms.PDB_model_num 1 _pdbx_distant_solvent_atoms.auth_atom_id O _pdbx_distant_solvent_atoms.label_alt_id ? _pdbx_distant_solvent_atoms.auth_asym_id A _pdbx_distant_solvent_atoms.auth_comp_id HOH _pdbx_distant_solvent_atoms.auth_seq_id 271 _pdbx_distant_solvent_atoms.PDB_ins_code ? _pdbx_distant_solvent_atoms.neighbor_macromolecule_distance 6.61 _pdbx_distant_solvent_atoms.neighbor_ligand_distance . # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal C OP3 O N N 1 C P P N N 2 C OP1 O N N 3 C OP2 O N N 4 C "O5'" O N N 5 C "C5'" C N N 6 C "C4'" C N R 7 C "O4'" O N N 8 C "C3'" C N S 9 C "O3'" O N N 10 C "C2'" C N R 11 C "O2'" O N N 12 C "C1'" C N R 13 C N1 N N N 14 C C2 C N N 15 C O2 O N N 16 C N3 N N N 17 C C4 C N N 18 C N4 N N N 19 C C5 C N N 20 C C6 C N N 21 C HOP3 H N N 22 C HOP2 H N N 23 C "H5'" H N N 24 C "H5''" H N N 25 C "H4'" H N N 26 C "H3'" H N N 27 C "HO3'" H N N 28 C "H2'" H N N 29 C "HO2'" H N N 30 C "H1'" H N N 31 C H41 H N N 32 C H42 H N N 33 C H5 H N N 34 C H6 H N N 35 G OP3 O N N 36 G P P N N 37 G OP1 O N N 38 G OP2 O N N 39 G "O5'" O N N 40 G "C5'" C N N 41 G "C4'" C N R 42 G "O4'" O N N 43 G "C3'" C N S 44 G "O3'" O N N 45 G "C2'" C N R 46 G "O2'" O N N 47 G "C1'" C N R 48 G N9 N Y N 49 G C8 C Y N 50 G N7 N Y N 51 G C5 C Y N 52 G C6 C N N 53 G O6 O N N 54 G N1 N N N 55 G C2 C N N 56 G N2 N N N 57 G N3 N N N 58 G C4 C Y N 59 G HOP3 H N N 60 G HOP2 H N N 61 G "H5'" H N N 62 G "H5''" H N N 63 G "H4'" H N N 64 G "H3'" H N N 65 G "HO3'" H N N 66 G "H2'" H N N 67 G "HO2'" H N N 68 G "H1'" H N N 69 G H8 H N N 70 G H1 H N N 71 G H21 H N N 72 G H22 H N N 73 HOH O O N N 74 HOH H1 H N N 75 HOH H2 H N N 76 SO4 S S N N 77 SO4 O1 O N N 78 SO4 O2 O N N 79 SO4 O3 O N N 80 SO4 O4 O N N 81 U OP3 O N N 82 U P P N N 83 U OP1 O N N 84 U OP2 O N N 85 U "O5'" O N N 86 U "C5'" C N N 87 U "C4'" C N R 88 U "O4'" O N N 89 U "C3'" C N S 90 U "O3'" O N N 91 U "C2'" C N R 92 U "O2'" O N N 93 U "C1'" C N R 94 U N1 N N N 95 U C2 C N N 96 U O2 O N N 97 U N3 N N N 98 U C4 C N N 99 U O4 O N N 100 U C5 C N N 101 U C6 C N N 102 U HOP3 H N N 103 U HOP2 H N N 104 U "H5'" H N N 105 U "H5''" H N N 106 U "H4'" H N N 107 U "H3'" H N N 108 U "HO3'" H N N 109 U "H2'" H N N 110 U "HO2'" H N N 111 U "H1'" H N N 112 U H3 H N N 113 U H5 H N N 114 U H6 H N N 115 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal C OP3 P sing N N 1 C OP3 HOP3 sing N N 2 C P OP1 doub N N 3 C P OP2 sing N N 4 C P "O5'" sing N N 5 C OP2 HOP2 sing N N 6 C "O5'" "C5'" sing N N 7 C "C5'" "C4'" sing N N 8 C "C5'" "H5'" sing N N 9 C "C5'" "H5''" sing N N 10 C "C4'" "O4'" sing N N 11 C "C4'" "C3'" sing N N 12 C "C4'" "H4'" sing N N 13 C "O4'" "C1'" sing N N 14 C "C3'" "O3'" sing N N 15 C "C3'" "C2'" sing N N 16 C "C3'" "H3'" sing N N 17 C "O3'" "HO3'" sing N N 18 C "C2'" "O2'" sing N N 19 C "C2'" "C1'" sing N N 20 C "C2'" "H2'" sing N N 21 C "O2'" "HO2'" sing N N 22 C "C1'" N1 sing N N 23 C "C1'" "H1'" sing N N 24 C N1 C2 sing N N 25 C N1 C6 sing N N 26 C C2 O2 doub N N 27 C C2 N3 sing N N 28 C N3 C4 doub N N 29 C C4 N4 sing N N 30 C C4 C5 sing N N 31 C N4 H41 sing N N 32 C N4 H42 sing N N 33 C C5 C6 doub N N 34 C C5 H5 sing N N 35 C C6 H6 sing N N 36 G OP3 P sing N N 37 G OP3 HOP3 sing N N 38 G P OP1 doub N N 39 G P OP2 sing N N 40 G P "O5'" sing N N 41 G OP2 HOP2 sing N N 42 G "O5'" "C5'" sing N N 43 G "C5'" "C4'" sing N N 44 G "C5'" "H5'" sing N N 45 G "C5'" "H5''" sing N N 46 G "C4'" "O4'" sing N N 47 G "C4'" "C3'" sing N N 48 G "C4'" "H4'" sing N N 49 G "O4'" "C1'" sing N N 50 G "C3'" "O3'" sing N N 51 G "C3'" "C2'" sing N N 52 G "C3'" "H3'" sing N N 53 G "O3'" "HO3'" sing N N 54 G "C2'" "O2'" sing N N 55 G "C2'" "C1'" sing N N 56 G "C2'" "H2'" sing N N 57 G "O2'" "HO2'" sing N N 58 G "C1'" N9 sing N N 59 G "C1'" "H1'" sing N N 60 G N9 C8 sing Y N 61 G N9 C4 sing Y N 62 G C8 N7 doub Y N 63 G C8 H8 sing N N 64 G N7 C5 sing Y N 65 G C5 C6 sing N N 66 G C5 C4 doub Y N 67 G C6 O6 doub N N 68 G C6 N1 sing N N 69 G N1 C2 sing N N 70 G N1 H1 sing N N 71 G C2 N2 sing N N 72 G C2 N3 doub N N 73 G N2 H21 sing N N 74 G N2 H22 sing N N 75 G N3 C4 sing N N 76 HOH O H1 sing N N 77 HOH O H2 sing N N 78 SO4 S O1 doub N N 79 SO4 S O2 doub N N 80 SO4 S O3 sing N N 81 SO4 S O4 sing N N 82 U OP3 P sing N N 83 U OP3 HOP3 sing N N 84 U P OP1 doub N N 85 U P OP2 sing N N 86 U P "O5'" sing N N 87 U OP2 HOP2 sing N N 88 U "O5'" "C5'" sing N N 89 U "C5'" "C4'" sing N N 90 U "C5'" "H5'" sing N N 91 U "C5'" "H5''" sing N N 92 U "C4'" "O4'" sing N N 93 U "C4'" "C3'" sing N N 94 U "C4'" "H4'" sing N N 95 U "O4'" "C1'" sing N N 96 U "C3'" "O3'" sing N N 97 U "C3'" "C2'" sing N N 98 U "C3'" "H3'" sing N N 99 U "O3'" "HO3'" sing N N 100 U "C2'" "O2'" sing N N 101 U "C2'" "C1'" sing N N 102 U "C2'" "H2'" sing N N 103 U "O2'" "HO2'" sing N N 104 U "C1'" N1 sing N N 105 U "C1'" "H1'" sing N N 106 U N1 C2 sing N N 107 U N1 C6 sing N N 108 U C2 O2 doub N N 109 U C2 N3 sing N N 110 U N3 C4 sing N N 111 U N3 H3 sing N N 112 U C4 O4 doub N N 113 U C4 C5 sing N N 114 U C5 C6 doub N N 115 U C5 H5 sing N N 116 U C6 H6 sing N N 117 # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 5MWI 'a-form double helix' 5MWI 'mismatched base pair' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A G 1 1_555 A C 26 4_555 -0.228 -0.089 0.222 0.410 -7.425 1.764 1 A_G1:C26_A A 1 ? A 26 ? 19 1 1 A C 2 1_555 A G 25 4_555 0.304 -0.368 -0.038 6.751 -17.178 -0.895 2 A_C2:G25_A A 2 ? A 25 ? 19 1 1 A U 3 1_555 A U 24 4_555 -1.867 -1.752 0.142 3.400 -14.277 6.023 3 A_U3:U24_A A 3 ? A 24 ? 16 1 1 A G 4 1_555 A C 23 4_555 -0.341 -0.202 -0.061 -4.837 -11.492 -0.920 4 A_G4:C23_A A 4 ? A 23 ? 19 1 1 A C 5 1_555 A G 22 4_555 0.287 -0.136 -0.030 -3.960 -10.321 1.412 5 A_C5:G22_A A 5 ? A 22 ? 19 1 1 A U 6 1_555 A U 21 4_555 -2.698 -1.215 -0.141 -2.266 -9.700 -29.310 6 A_U6:U21_A A 6 ? A 21 ? ? ? 1 A G 7 1_555 A C 20 4_555 -0.110 -0.135 0.019 -4.479 -8.565 -2.082 7 A_G7:C20_A A 7 ? A 20 ? 19 1 1 A C 8 1_555 A G 19 4_555 0.197 -0.131 0.030 0.427 -10.288 1.352 8 A_C8:G19_A A 8 ? A 19 ? 19 1 1 A U 9 1_555 A U 18 4_555 -2.866 -1.324 -0.269 0.957 -12.070 -26.262 9 A_U9:U18_A A 9 ? A 18 ? ? ? 1 A G 10 1_555 A C 17 4_555 -0.309 -0.112 0.008 -2.032 -9.570 -2.309 10 A_G10:C17_A A 10 ? A 17 ? 19 1 1 A C 11 1_555 A G 16 4_555 0.151 -0.142 0.136 -2.707 -8.033 0.215 11 A_C11:G16_A A 11 ? A 16 ? 19 1 1 A U 12 1_555 A U 15 4_555 -3.104 -1.371 -0.345 -5.248 -10.630 -30.021 12 A_U12:U15_A A 12 ? A 15 ? 12 1 1 A G 13 1_555 A C 14 4_555 -0.128 -0.119 0.073 -0.611 -4.134 -0.465 13 A_G13:C14_A A 13 ? A 14 ? 19 1 1 A C 14 1_555 A G 13 4_555 0.128 -0.119 0.073 0.611 -4.134 -0.465 14 A_C14:G13_A A 14 ? A 13 ? 19 1 1 A U 15 1_555 A U 12 4_555 3.104 -1.371 -0.345 5.248 -10.630 -30.021 15 A_U15:U12_A A 15 ? A 12 ? 12 1 1 A G 16 1_555 A C 11 4_555 -0.151 -0.142 0.136 2.707 -8.033 0.215 16 A_G16:C11_A A 16 ? A 11 ? 19 1 1 A C 17 1_555 A G 10 4_555 0.309 -0.112 0.008 2.032 -9.570 -2.309 17 A_C17:G10_A A 17 ? A 10 ? 19 1 1 A U 18 1_555 A U 9 4_555 2.866 -1.324 -0.269 -0.957 -12.070 -26.262 18 A_U18:U9_A A 18 ? A 9 ? ? ? 1 A G 19 1_555 A C 8 4_555 -0.197 -0.131 0.030 -0.427 -10.288 1.352 19 A_G19:C8_A A 19 ? A 8 ? 19 1 1 A C 20 1_555 A G 7 4_555 0.110 -0.135 0.019 4.479 -8.565 -2.082 20 A_C20:G7_A A 20 ? A 7 ? 19 1 1 A U 21 1_555 A U 6 4_555 2.698 -1.215 -0.141 2.266 -9.700 -29.310 21 A_U21:U6_A A 21 ? A 6 ? ? ? 1 A G 22 1_555 A C 5 4_555 -0.287 -0.136 -0.030 3.960 -10.321 1.412 22 A_G22:C5_A A 22 ? A 5 ? 19 1 1 A C 23 1_555 A G 4 4_555 0.341 -0.202 -0.061 4.837 -11.492 -0.920 23 A_C23:G4_A A 23 ? A 4 ? 19 1 1 A U 24 1_555 A U 3 4_555 1.867 -1.752 0.142 -3.400 -14.277 6.023 24 A_U24:U3_A A 24 ? A 3 ? 16 1 1 A G 25 1_555 A C 2 4_555 -0.304 -0.368 -0.038 -6.751 -17.178 -0.895 25 A_G25:C2_A A 25 ? A 2 ? 19 1 1 A C 26 1_555 A G 1 4_555 0.228 -0.089 0.222 -0.410 -7.425 1.764 26 A_C26:G1_A A 26 ? A 1 ? 19 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A G 1 1_555 A C 26 4_555 A C 2 1_555 A G 25 4_555 -0.774 -1.670 3.038 -0.588 3.497 35.296 -3.206 1.193 2.877 5.750 0.968 35.468 1 AA_G1C2:G25C26_AA A 1 ? A 26 ? A 2 ? A 25 ? 1 A C 2 1_555 A G 25 4_555 A U 3 1_555 A U 24 4_555 0.214 -1.307 3.112 -6.659 17.139 26.058 -5.002 -1.407 1.825 33.253 12.921 31.800 2 AA_C2U3:U24G25_AA A 2 ? A 25 ? A 3 ? A 24 ? 1 A U 3 1_555 A U 24 4_555 A G 4 1_555 A C 23 4_555 -0.841 -0.935 3.535 -3.504 10.306 42.105 -2.324 0.777 3.285 14.064 4.782 43.427 3 AA_U3G4:C23U24_AA A 3 ? A 24 ? A 4 ? A 23 ? 1 A G 4 1_555 A C 23 4_555 A C 5 1_555 A G 22 4_555 0.062 -1.353 3.337 1.671 9.210 33.240 -3.663 0.146 2.871 15.716 -2.851 34.497 4 AA_G4C5:G22C23_AA A 4 ? A 23 ? A 5 ? A 22 ? 1 A C 5 1_555 A G 22 4_555 A U 6 1_555 A U 21 4_555 -1.008 -2.093 3.177 -1.258 14.344 19.705 -8.456 2.082 1.408 36.297 3.183 24.364 5 AA_C5U6:U21G22_AA A 5 ? A 22 ? A 6 ? A 21 ? 1 A U 6 1_555 A U 21 4_555 A G 7 1_555 A C 20 4_555 1.805 -1.800 3.348 0.206 8.028 45.009 -3.005 -2.307 3.009 10.389 -0.267 45.683 6 AA_U6G7:C20U21_AA A 6 ? A 21 ? A 7 ? A 20 ? 1 A G 7 1_555 A C 20 4_555 A C 8 1_555 A G 19 4_555 0.398 -1.645 3.221 1.458 3.237 32.112 -3.509 -0.467 3.059 5.829 -2.625 32.302 7 AA_G7C8:G19C20_AA A 7 ? A 20 ? A 8 ? A 19 ? 1 A C 8 1_555 A G 19 4_555 A U 9 1_555 A U 18 4_555 -1.019 -2.556 3.086 -1.421 10.448 18.020 -10.411 2.359 1.469 30.229 4.113 20.857 8 AA_C8U9:U18G19_AA A 8 ? A 19 ? A 9 ? A 18 ? 1 A U 9 1_555 A U 18 4_555 A G 10 1_555 A C 17 4_555 0.832 -1.739 3.386 -4.724 7.876 46.070 -2.822 -1.428 2.972 9.948 5.966 46.928 9 AA_U9G10:C17U18_AA A 9 ? A 18 ? A 10 ? A 17 ? 1 A G 10 1_555 A C 17 4_555 A C 11 1_555 A G 16 4_555 0.220 -1.769 3.322 -0.781 6.617 33.185 -4.069 -0.499 2.919 11.442 1.351 33.829 10 AA_G10C11:G16C17_AA A 10 ? A 17 ? A 11 ? A 16 ? 1 A C 11 1_555 A G 16 4_555 A U 12 1_555 A U 15 4_555 -1.133 -2.368 3.260 0.762 14.199 17.035 -10.115 3.159 0.968 40.045 -2.149 22.156 11 AA_C11U12:U15G16_AA A 11 ? A 16 ? A 12 ? A 15 ? 1 A U 12 1_555 A U 15 4_555 A G 13 1_555 A C 14 4_555 2.052 -1.934 3.159 -1.794 5.307 45.135 -2.934 -2.801 2.847 6.883 2.327 45.463 12 AA_U12G13:C14U15_AA A 12 ? A 15 ? A 13 ? A 14 ? 1 A G 13 1_555 A C 14 4_555 A C 14 1_555 A G 13 4_555 0.000 -2.128 3.319 0.000 1.058 31.756 -4.081 0.000 3.248 1.932 0.000 31.773 13 AA_G13C14:G13C14_AA A 13 ? A 14 ? A 14 ? A 13 ? 1 A C 14 1_555 A G 13 4_555 A U 15 1_555 A U 12 4_555 -2.052 -1.934 3.159 1.794 5.307 45.135 -2.934 2.801 2.847 6.883 -2.327 45.463 14 AA_C14U15:U12G13_AA A 14 ? A 13 ? A 15 ? A 12 ? 1 A U 15 1_555 A U 12 4_555 A G 16 1_555 A C 11 4_555 1.133 -2.368 3.260 -0.762 14.199 17.035 -10.115 -3.159 0.968 40.045 2.149 22.156 15 AA_U15G16:C11U12_AA A 15 ? A 12 ? A 16 ? A 11 ? 1 A G 16 1_555 A C 11 4_555 A C 17 1_555 A G 10 4_555 -0.220 -1.769 3.322 0.781 6.617 33.185 -4.069 0.499 2.919 11.442 -1.351 33.829 16 AA_G16C17:G10C11_AA A 16 ? A 11 ? A 17 ? A 10 ? 1 A C 17 1_555 A G 10 4_555 A U 18 1_555 A U 9 4_555 -0.832 -1.739 3.386 4.724 7.876 46.070 -2.822 1.428 2.972 9.948 -5.966 46.928 17 AA_C17U18:U9G10_AA A 17 ? A 10 ? A 18 ? A 9 ? 1 A U 18 1_555 A U 9 4_555 A G 19 1_555 A C 8 4_555 1.019 -2.556 3.086 1.421 10.448 18.020 -10.411 -2.359 1.469 30.229 -4.113 20.857 18 AA_U18G19:C8U9_AA A 18 ? A 9 ? A 19 ? A 8 ? 1 A G 19 1_555 A C 8 4_555 A C 20 1_555 A G 7 4_555 -0.398 -1.645 3.221 -1.458 3.237 32.112 -3.509 0.467 3.059 5.829 2.625 32.302 19 AA_G19C20:G7C8_AA A 19 ? A 8 ? A 20 ? A 7 ? 1 A C 20 1_555 A G 7 4_555 A U 21 1_555 A U 6 4_555 -1.805 -1.800 3.348 -0.206 8.028 45.009 -3.005 2.307 3.009 10.389 0.267 45.683 20 AA_C20U21:U6G7_AA A 20 ? A 7 ? A 21 ? A 6 ? 1 A U 21 1_555 A U 6 4_555 A G 22 1_555 A C 5 4_555 1.008 -2.093 3.177 1.258 14.344 19.705 -8.456 -2.082 1.408 36.297 -3.183 24.364 21 AA_U21G22:C5U6_AA A 21 ? A 6 ? A 22 ? A 5 ? 1 A G 22 1_555 A C 5 4_555 A C 23 1_555 A G 4 4_555 -0.062 -1.353 3.337 -1.671 9.210 33.240 -3.663 -0.146 2.871 15.716 2.851 34.497 22 AA_G22C23:G4C5_AA A 22 ? A 5 ? A 23 ? A 4 ? 1 A C 23 1_555 A G 4 4_555 A U 24 1_555 A U 3 4_555 0.841 -0.935 3.535 3.504 10.306 42.105 -2.324 -0.777 3.285 14.064 -4.782 43.427 23 AA_C23U24:U3G4_AA A 23 ? A 4 ? A 24 ? A 3 ? 1 A U 24 1_555 A U 3 4_555 A G 25 1_555 A C 2 4_555 -0.214 -1.307 3.112 6.659 17.139 26.058 -5.002 1.407 1.825 33.253 -12.921 31.800 24 AA_U24G25:C2U3_AA A 24 ? A 3 ? A 25 ? A 2 ? 1 A G 25 1_555 A C 2 4_555 A C 26 1_555 A G 1 4_555 0.774 -1.670 3.038 0.588 3.497 35.296 -3.206 -1.193 2.877 5.750 -0.968 35.468 25 AA_G25C26:G1C2_AA A 25 ? A 2 ? A 26 ? A 1 ? # loop_ _pdbx_audit_support.funding_organization _pdbx_audit_support.country _pdbx_audit_support.grant_number _pdbx_audit_support.ordinal 'National Science Centre' Poland UMO-2011/01/B/NZ1/04429 1 'Ministry of Science and Higher Education' Poland 0450/IP1/2013/72 2 # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 4E48 _pdbx_initial_refinement_model.details ? # _atom_sites.entry_id 5MWI _atom_sites.fract_transf_matrix[1][1] 0.022981 _atom_sites.fract_transf_matrix[1][2] 0.013268 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] -0.000000 _atom_sites.fract_transf_matrix[2][2] 0.026536 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] -0.000000 _atom_sites.fract_transf_matrix[3][3] 0.005048 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O P S # loop_