HEADER TRANSFERASE 19-JAN-17 5MWT TITLE GALECTIN-1 IN COMPLEX WITH LIGAND JB97 COMPND MOL_ID: 1; COMPND 2 MOLECULE: GALECTIN-1; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: GAL-1,14 KDA LAMININ-BINDING PROTEIN,HLBP14,14 KDA LECTIN, COMPND 5 BETA-GALACTOSIDE-BINDING LECTIN L-14-I,GALAPTIN,HBL,HPL,LACTOSE- COMPND 6 BINDING LECTIN 1,LECTIN GALACTOSIDE-BINDING SOLUBLE 1,PUTATIVE MAPK- COMPND 7 ACTIVATING PROTEIN PM12,S-LAC LECTIN 1; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: LGALS1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS SUCROSE PHOSPHORYLASE, BISP, BIFIDOBACTERIUM, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR C.GRIMM,J.BECHOLD REVDAT 2 16-OCT-19 5MWT 1 REMARK REVDAT 1 14-FEB-18 5MWT 0 JRNL AUTH C.GRIMM,J.BECHOLD JRNL TITL STRUCTURAL INSIGHTS INTO THE REDESIGN OF A SUCROSE JRNL TITL 2 PHOSPHORYLASE BY INDUCED LOOP REPOSITIONING JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.71 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX DEV_2443 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.71 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 51.60 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.4 REMARK 3 NUMBER OF REFLECTIONS : 30671 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.206 REMARK 3 R VALUE (WORKING SET) : 0.205 REMARK 3 FREE R VALUE : 0.232 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.870 REMARK 3 FREE R VALUE TEST SET COUNT : 1493 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 51.6267 - 3.8040 0.97 2785 143 0.1692 0.1933 REMARK 3 2 3.8040 - 3.0195 0.97 2689 128 0.1709 0.2276 REMARK 3 3 3.0195 - 2.6378 0.99 2669 160 0.2026 0.2179 REMARK 3 4 2.6378 - 2.3966 1.00 2693 129 0.2019 0.2088 REMARK 3 5 2.3966 - 2.2249 0.99 2643 119 0.1997 0.2157 REMARK 3 6 2.2249 - 2.0937 0.99 2640 136 0.2089 0.2318 REMARK 3 7 2.0937 - 1.9888 0.99 2645 126 0.2215 0.3091 REMARK 3 8 1.9888 - 1.9022 0.99 2616 133 0.2769 0.2735 REMARK 3 9 1.9022 - 1.8290 0.99 2647 124 0.3182 0.3221 REMARK 3 10 1.8290 - 1.7659 0.98 2591 143 0.3375 0.3122 REMARK 3 11 1.7659 - 1.7107 0.98 2560 152 0.3530 0.3764 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.240 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 24.840 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 34.58 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.006 2340 REMARK 3 ANGLE : 0.739 3184 REMARK 3 CHIRALITY : 0.052 348 REMARK 3 PLANARITY : 0.004 420 REMARK 3 DIHEDRAL : 15.290 1465 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 15 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 2 THROUGH 15 ) REMARK 3 ORIGIN FOR THE GROUP (A): 13.6081 11.4429 17.6515 REMARK 3 T TENSOR REMARK 3 T11: 0.2789 T22: 0.1619 REMARK 3 T33: 0.2494 T12: 0.0426 REMARK 3 T13: 0.0072 T23: -0.0552 REMARK 3 L TENSOR REMARK 3 L11: 7.4126 L22: 5.9979 REMARK 3 L33: 7.0220 L12: 4.9657 REMARK 3 L13: 2.9945 L23: -0.0833 REMARK 3 S TENSOR REMARK 3 S11: 0.2579 S12: -0.1637 S13: -0.2244 REMARK 3 S21: -0.0240 S22: -0.1040 S23: -0.0003 REMARK 3 S31: 0.6636 S32: 0.1814 S33: -0.0850 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 17 THROUGH 29 ) REMARK 3 ORIGIN FOR THE GROUP (A): 5.6745 18.4514 3.5793 REMARK 3 T TENSOR REMARK 3 T11: 0.2588 T22: 0.1918 REMARK 3 T33: 0.2587 T12: -0.0483 REMARK 3 T13: -0.0248 T23: 0.0348 REMARK 3 L TENSOR REMARK 3 L11: 2.1313 L22: 5.8521 REMARK 3 L33: 8.2611 L12: -4.2242 REMARK 3 L13: 6.0327 L23: -1.4911 REMARK 3 S TENSOR REMARK 3 S11: 0.3568 S12: 0.0917 S13: -0.4628 REMARK 3 S21: -0.6478 S22: -0.1892 S23: 0.3957 REMARK 3 S31: 0.1591 S32: -0.0655 S33: -0.1776 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 30 THROUGH 76 ) REMARK 3 ORIGIN FOR THE GROUP (A): 5.6955 26.2362 15.6873 REMARK 3 T TENSOR REMARK 3 T11: 0.2361 T22: 0.1814 REMARK 3 T33: 0.2033 T12: -0.0130 REMARK 3 T13: 0.0455 T23: -0.0053 REMARK 3 L TENSOR REMARK 3 L11: 1.1247 L22: 2.9230 REMARK 3 L33: 5.1054 L12: 0.2052 REMARK 3 L13: 0.2426 L23: -0.8712 REMARK 3 S TENSOR REMARK 3 S11: 0.0042 S12: 0.0166 S13: 0.1340 REMARK 3 S21: 0.0683 S22: 0.0960 S23: 0.1818 REMARK 3 S31: -0.4138 S32: -0.2065 S33: -0.0827 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 77 THROUGH 99 ) REMARK 3 ORIGIN FOR THE GROUP (A): 15.1457 23.0244 9.0252 REMARK 3 T TENSOR REMARK 3 T11: 0.2198 T22: 0.1994 REMARK 3 T33: 0.2102 T12: -0.0656 REMARK 3 T13: 0.0390 T23: 0.0092 REMARK 3 L TENSOR REMARK 3 L11: 5.0802 L22: 4.1777 REMARK 3 L33: 3.5168 L12: -0.3391 REMARK 3 L13: 2.1089 L23: 0.4270 REMARK 3 S TENSOR REMARK 3 S11: 0.1641 S12: -0.0314 S13: -0.0617 REMARK 3 S21: -0.1589 S22: -0.0676 S23: -0.1734 REMARK 3 S31: 0.0624 S32: 0.1778 S33: -0.0628 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 100 THROUGH 109 ) REMARK 3 ORIGIN FOR THE GROUP (A): 16.6524 28.3001 9.1258 REMARK 3 T TENSOR REMARK 3 T11: 0.3516 T22: 0.2799 REMARK 3 T33: 0.2222 T12: -0.0731 REMARK 3 T13: 0.0351 T23: -0.0086 REMARK 3 L TENSOR REMARK 3 L11: 0.2810 L22: 1.0614 REMARK 3 L33: 2.0136 L12: -0.3991 REMARK 3 L13: -1.8653 L23: 4.7951 REMARK 3 S TENSOR REMARK 3 S11: 0.1217 S12: -0.0093 S13: -0.0253 REMARK 3 S21: -0.0844 S22: -0.0226 S23: 0.0141 REMARK 3 S31: -1.0496 S32: 0.0651 S33: -0.1114 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 110 THROUGH 124 ) REMARK 3 ORIGIN FOR THE GROUP (A): 11.9844 17.7529 21.1952 REMARK 3 T TENSOR REMARK 3 T11: 0.2704 T22: 0.2188 REMARK 3 T33: 0.1771 T12: -0.0103 REMARK 3 T13: -0.0092 T23: -0.0128 REMARK 3 L TENSOR REMARK 3 L11: 2.3036 L22: 5.9527 REMARK 3 L33: 1.8958 L12: -1.3150 REMARK 3 L13: -1.4086 L23: -1.2481 REMARK 3 S TENSOR REMARK 3 S11: -0.1951 S12: -0.0890 S13: -0.0959 REMARK 3 S21: 0.6885 S22: 0.2345 S23: -0.3460 REMARK 3 S31: -0.1358 S32: 0.3813 S33: -0.0893 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 125 THROUGH 134 ) REMARK 3 ORIGIN FOR THE GROUP (A): 11.0540 12.0706 6.8397 REMARK 3 T TENSOR REMARK 3 T11: 0.2922 T22: 0.1872 REMARK 3 T33: 0.2984 T12: -0.0307 REMARK 3 T13: -0.0143 T23: -0.0005 REMARK 3 L TENSOR REMARK 3 L11: 2.0388 L22: 9.7100 REMARK 3 L33: 7.3991 L12: -7.1609 REMARK 3 L13: 2.8040 L23: -2.4101 REMARK 3 S TENSOR REMARK 3 S11: -0.0080 S12: 0.4081 S13: -0.0831 REMARK 3 S21: 0.0401 S22: 0.1095 S23: 0.4205 REMARK 3 S31: 0.1391 S32: 0.3220 S33: 0.0605 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 2 THROUGH 15 ) REMARK 3 ORIGIN FOR THE GROUP (A): 4.6081 2.8668 10.8967 REMARK 3 T TENSOR REMARK 3 T11: 0.2295 T22: 0.1344 REMARK 3 T33: 0.2139 T12: -0.0292 REMARK 3 T13: -0.0198 T23: 0.0310 REMARK 3 L TENSOR REMARK 3 L11: 5.6527 L22: 4.4885 REMARK 3 L33: 8.1604 L12: 2.1582 REMARK 3 L13: 2.4841 L23: 4.7537 REMARK 3 S TENSOR REMARK 3 S11: 0.1845 S12: 0.0425 S13: 0.2488 REMARK 3 S21: 0.1965 S22: -0.1097 S23: -0.1095 REMARK 3 S31: -0.0850 S32: -0.0576 S33: -0.0977 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 17 THROUGH 48 ) REMARK 3 ORIGIN FOR THE GROUP (A): 13.1964 -5.5360 14.7666 REMARK 3 T TENSOR REMARK 3 T11: 0.2077 T22: 0.1809 REMARK 3 T33: 0.1650 T12: 0.0047 REMARK 3 T13: -0.0368 T23: -0.0366 REMARK 3 L TENSOR REMARK 3 L11: 4.2254 L22: 3.8543 REMARK 3 L33: 2.4026 L12: 0.5679 REMARK 3 L13: -1.0444 L23: -0.9674 REMARK 3 S TENSOR REMARK 3 S11: -0.0106 S12: -0.2685 S13: 0.0408 REMARK 3 S21: 0.3053 S22: -0.0061 S23: -0.3744 REMARK 3 S31: 0.0156 S32: 0.2179 S33: 0.0043 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 49 THROUGH 56 ) REMARK 3 ORIGIN FOR THE GROUP (A): 21.8313 -16.7536 18.7783 REMARK 3 T TENSOR REMARK 3 T11: 0.3625 T22: 0.3316 REMARK 3 T33: 0.3143 T12: 0.0470 REMARK 3 T13: -0.0827 T23: 0.0315 REMARK 3 L TENSOR REMARK 3 L11: 9.1935 L22: 2.0247 REMARK 3 L33: 8.0178 L12: 1.2359 REMARK 3 L13: -2.5116 L23: 0.9209 REMARK 3 S TENSOR REMARK 3 S11: 0.2337 S12: -0.9867 S13: -0.0629 REMARK 3 S21: 1.1018 S22: 0.0951 S23: -0.7539 REMARK 3 S31: 0.5443 S32: 0.1234 S33: -0.2402 REMARK 3 TLS GROUP : 11 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 57 THROUGH 76 ) REMARK 3 ORIGIN FOR THE GROUP (A): 8.4082 -15.7807 15.8046 REMARK 3 T TENSOR REMARK 3 T11: 0.2757 T22: 0.1968 REMARK 3 T33: 0.1928 T12: 0.0034 REMARK 3 T13: 0.0155 T23: 0.0058 REMARK 3 L TENSOR REMARK 3 L11: 9.6644 L22: 2.1047 REMARK 3 L33: 3.5261 L12: -1.7148 REMARK 3 L13: -5.4162 L23: 0.9916 REMARK 3 S TENSOR REMARK 3 S11: -0.2518 S12: -0.2305 S13: -0.3911 REMARK 3 S21: 0.2599 S22: 0.0266 S23: 0.1231 REMARK 3 S31: 0.3433 S32: 0.1249 S33: 0.2140 REMARK 3 TLS GROUP : 12 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 77 THROUGH 89 ) REMARK 3 ORIGIN FOR THE GROUP (A): 21.3244 -6.6638 7.4622 REMARK 3 T TENSOR REMARK 3 T11: 0.2115 T22: 0.2492 REMARK 3 T33: 0.3850 T12: 0.0388 REMARK 3 T13: -0.0220 T23: -0.0385 REMARK 3 L TENSOR REMARK 3 L11: 4.5932 L22: 4.9936 REMARK 3 L33: 4.1439 L12: 1.7998 REMARK 3 L13: 2.3444 L23: -0.7534 REMARK 3 S TENSOR REMARK 3 S11: -0.4329 S12: 0.1243 S13: 0.7707 REMARK 3 S21: -0.0901 S22: 0.0276 S23: -1.2096 REMARK 3 S31: -0.0521 S32: 0.3400 S33: 0.3769 REMARK 3 TLS GROUP : 13 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 90 THROUGH 99 ) REMARK 3 ORIGIN FOR THE GROUP (A): 4.1237 -9.2442 2.9747 REMARK 3 T TENSOR REMARK 3 T11: 0.2291 T22: 0.1927 REMARK 3 T33: 0.1533 T12: -0.0140 REMARK 3 T13: -0.0043 T23: -0.0032 REMARK 3 L TENSOR REMARK 3 L11: 8.9495 L22: 9.3235 REMARK 3 L33: 5.9637 L12: -0.2394 REMARK 3 L13: 1.8466 L23: 0.3270 REMARK 3 S TENSOR REMARK 3 S11: -0.0703 S12: 0.3943 S13: -0.1142 REMARK 3 S21: -0.5667 S22: 0.0857 S23: 0.2544 REMARK 3 S31: 0.2666 S32: -0.2850 S33: -0.0376 REMARK 3 TLS GROUP : 14 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 100 THROUGH 118 ) REMARK 3 ORIGIN FOR THE GROUP (A): 5.4099 -9.8540 6.7206 REMARK 3 T TENSOR REMARK 3 T11: 0.1747 T22: 0.1496 REMARK 3 T33: 0.1080 T12: -0.0240 REMARK 3 T13: -0.0249 T23: -0.0082 REMARK 3 L TENSOR REMARK 3 L11: 2.8306 L22: 2.5171 REMARK 3 L33: 2.1107 L12: -0.2986 REMARK 3 L13: -1.5690 L23: -0.0147 REMARK 3 S TENSOR REMARK 3 S11: -0.0792 S12: 0.2179 S13: -0.1407 REMARK 3 S21: -0.1163 S22: 0.0418 S23: 0.0885 REMARK 3 S31: 0.1893 S32: -0.1579 S33: 0.0132 REMARK 3 TLS GROUP : 15 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 119 THROUGH 134 ) REMARK 3 ORIGIN FOR THE GROUP (A): 14.3074 1.6922 11.9497 REMARK 3 T TENSOR REMARK 3 T11: 0.2220 T22: 0.1469 REMARK 3 T33: 0.1740 T12: 0.0014 REMARK 3 T13: -0.0129 T23: -0.0752 REMARK 3 L TENSOR REMARK 3 L11: 9.5515 L22: 6.9146 REMARK 3 L33: 3.5207 L12: -0.3793 REMARK 3 L13: 0.4940 L23: -2.8420 REMARK 3 S TENSOR REMARK 3 S11: 0.1416 S12: -0.0961 S13: 0.1216 REMARK 3 S21: 0.1045 S22: 0.0223 S23: -0.2681 REMARK 3 S31: 0.2595 S32: 0.2974 S33: -0.1136 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5MWT COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 19-JAN-17. REMARK 100 THE DEPOSITION ID IS D_1200003141. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 10-NOV-16 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID30B REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9763 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 S 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 30672 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.711 REMARK 200 RESOLUTION RANGE LOW (A) : 60.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.0 REMARK 200 DATA REDUNDANCY : 3.900 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 9.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 48.23 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.38 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1.5 M AMMONIUM SULFATE, PH 7.5,, VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 21.64500 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 55.62000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 29.12500 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 55.62000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 21.64500 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 29.12500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1590 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 12320 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -10.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 HH TYR A 104 O HOH A 305 1.47 REMARK 500 O HOH A 358 O HOH A 376 1.80 REMARK 500 O HOH B 345 O HOH B 359 1.89 REMARK 500 O HOH A 352 O HOH A 389 2.05 REMARK 500 O HOH B 342 O HOH B 380 2.11 REMARK 500 O HOH A 337 O HOH A 379 2.12 REMARK 500 N ASP A 134 O HOH A 301 2.17 REMARK 500 O HOH A 380 O HOH B 360 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 HH12 ARG A 20 OD2 ASP A 26 4555 1.50 REMARK 500 O HOH A 355 O HOH B 304 4455 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 50 80.27 -157.89 REMARK 500 PRO A 78 47.71 -85.34 REMARK 500 ASP A 92 -166.52 -128.19 REMARK 500 SER B 29 147.14 -175.13 REMARK 500 ASN B 50 92.90 -161.34 REMARK 500 PHE B 77 76.25 -151.96 REMARK 500 ASP B 125 51.11 -90.35 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue BME A 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue JB9 A 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 B 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue JB9 B 202 DBREF 5MWT A 2 134 UNP P09382 LEG1_HUMAN 3 135 DBREF 5MWT B 2 134 UNP P09382 LEG1_HUMAN 3 135 SEQRES 1 A 133 CYS GLY LEU VAL ALA SER ASN LEU ASN LEU LYS PRO GLY SEQRES 2 A 133 GLU CME LEU ARG VAL ARG GLY GLU VAL ALA PRO ASP ALA SEQRES 3 A 133 LYS SER PHE VAL LEU ASN LEU GLY LYS ASP SER ASN ASN SEQRES 4 A 133 LEU CYS LEU HIS PHE ASN PRO ARG PHE ASN ALA HIS GLY SEQRES 5 A 133 ASP ALA ASN THR ILE VAL CYS ASN SER LYS ASP GLY GLY SEQRES 6 A 133 ALA TRP GLY THR GLU GLN ARG GLU ALA VAL PHE PRO PHE SEQRES 7 A 133 GLN PRO GLY SER VAL ALA GLU VAL CME ILE THR PHE ASP SEQRES 8 A 133 GLN ALA ASN LEU THR VAL LYS LEU PRO ASP GLY TYR GLU SEQRES 9 A 133 PHE LYS PHE PRO ASN ARG LEU ASN LEU GLU ALA ILE ASN SEQRES 10 A 133 TYR MET ALA ALA ASP GLY ASP PHE LYS ILE LYS CME VAL SEQRES 11 A 133 ALA PHE ASP SEQRES 1 B 133 CYS GLY LEU VAL ALA SER ASN LEU ASN LEU LYS PRO GLY SEQRES 2 B 133 GLU CME LEU ARG VAL ARG GLY GLU VAL ALA PRO ASP ALA SEQRES 3 B 133 LYS SER PHE VAL LEU ASN LEU GLY LYS ASP SER ASN ASN SEQRES 4 B 133 LEU CYS LEU HIS PHE ASN PRO ARG PHE ASN ALA HIS GLY SEQRES 5 B 133 ASP ALA ASN THR ILE VAL CYS ASN SER LYS ASP GLY GLY SEQRES 6 B 133 ALA TRP GLY THR GLU GLN ARG GLU ALA VAL PHE PRO PHE SEQRES 7 B 133 GLN PRO GLY SER VAL ALA GLU VAL CME ILE THR PHE ASP SEQRES 8 B 133 GLN ALA ASN LEU THR VAL LYS LEU PRO ASP GLY TYR GLU SEQRES 9 B 133 PHE LYS PHE PRO ASN ARG LEU ASN LEU GLU ALA ILE ASN SEQRES 10 B 133 TYR MET ALA ALA ASP GLY ASP PHE LYS ILE LYS CME VAL SEQRES 11 B 133 ALA PHE ASP MODRES 5MWT CME A 16 CYS MODIFIED RESIDUE MODRES 5MWT CME A 88 CYS MODIFIED RESIDUE MODRES 5MWT CME A 130 CYS MODIFIED RESIDUE MODRES 5MWT CME B 16 CYS MODIFIED RESIDUE MODRES 5MWT CME B 88 CYS MODIFIED RESIDUE MODRES 5MWT CME B 130 CYS MODIFIED RESIDUE HET CME A 16 19 HET CME A 88 19 HET CME A 130 19 HET CME B 16 19 HET CME B 88 19 HET CME B 130 19 HET BME A 201 8 HET JB9 A 202 49 HET SO4 B 201 5 HET JB9 B 202 49 HETNAM CME S,S-(2-HYDROXYETHYL)THIOCYSTEINE HETNAM BME BETA-MERCAPTOETHANOL HETNAM JB9 ~{N}-[(2~{R},3~{R},4~{R},5~{S},6~{R})-5-[(2~{S},3~{R}, HETNAM 2 JB9 4~{S},5~{S},6~{R})-4-[[1-[[3-[(~{Z})-3-[BIS(AZANYL) HETNAM 3 JB9 METHYLIDENEAMINO]PROP-1-ENYL]PHENYL]METHYL]-1,2,3- HETNAM 4 JB9 TRIAZOL-4-YL]METHOXY]-6-(HYDROXYMETHYL)-3,5- HETNAM 5 JB9 BIS(OXIDANYL)OXAN-2-YL]OXY-6-(HYDROXYMETHYL)-4- HETNAM 6 JB9 OXIDANYL-2-PROP-2-ENOXY-OXAN-3-YL]ETHANAMIDE HETNAM SO4 SULFATE ION HETSYN JB9 JB97 FORMUL 1 CME 6(C5 H11 N O3 S2) FORMUL 3 BME C2 H6 O S FORMUL 4 JB9 2(C31 H45 N7 O11) FORMUL 5 SO4 O4 S 2- FORMUL 7 HOH *184(H2 O) HELIX 1 AA1 PRO B 101 GLY B 103 5 3 SHEET 1 AA112 ALA A 67 TRP A 68 0 SHEET 2 AA112 ASP A 54 ASP A 64 -1 N ASP A 64 O ALA A 67 SHEET 3 AA112 ASN A 40 ALA A 51 -1 N ARG A 48 O THR A 57 SHEET 4 AA112 PHE A 30 ASP A 37 -1 N LEU A 32 O PHE A 45 SHEET 5 AA112 ILE A 117 GLY A 124 -1 O ALA A 121 N ASN A 33 SHEET 6 AA112 VAL A 5 LEU A 11 -1 N ALA A 6 O MET A 120 SHEET 7 AA112 VAL B 5 LEU B 11 -1 O SER B 7 N VAL A 5 SHEET 8 AA112 ILE B 117 GLY B 124 -1 O MET B 120 N ALA B 6 SHEET 9 AA112 PHE B 30 ASP B 37 -1 N ASN B 33 O ALA B 121 SHEET 10 AA112 ASN B 40 ALA B 51 -1 O PHE B 45 N LEU B 32 SHEET 11 AA112 ASP B 54 ASP B 64 -1 O THR B 57 N ARG B 48 SHEET 12 AA112 ALA B 67 TRP B 68 -1 O ALA B 67 N ASP B 64 SHEET 1 AA212 GLN A 72 ARG A 73 0 SHEET 2 AA212 ASP A 54 ASP A 64 -1 N CYS A 60 O GLN A 72 SHEET 3 AA212 ASN A 40 ALA A 51 -1 N ARG A 48 O THR A 57 SHEET 4 AA212 PHE A 30 ASP A 37 -1 N LEU A 32 O PHE A 45 SHEET 5 AA212 ILE A 117 GLY A 124 -1 O ALA A 121 N ASN A 33 SHEET 6 AA212 VAL A 5 LEU A 11 -1 N ALA A 6 O MET A 120 SHEET 7 AA212 VAL B 5 LEU B 11 -1 O SER B 7 N VAL A 5 SHEET 8 AA212 ILE B 117 GLY B 124 -1 O MET B 120 N ALA B 6 SHEET 9 AA212 PHE B 30 ASP B 37 -1 N ASN B 33 O ALA B 121 SHEET 10 AA212 ASN B 40 ALA B 51 -1 O PHE B 45 N LEU B 32 SHEET 11 AA212 ASP B 54 ASP B 64 -1 O THR B 57 N ARG B 48 SHEET 12 AA212 GLN B 72 ARG B 73 -1 O GLN B 72 N CYS B 60 SHEET 1 AA310 GLU A 105 PRO A 109 0 SHEET 2 AA310 ASN A 95 LYS A 99 -1 N VAL A 98 O PHE A 106 SHEET 3 AA310 SER A 83 PHE A 91 -1 N THR A 90 O THR A 97 SHEET 4 AA310 LEU A 17 VAL A 23 -1 N VAL A 23 O SER A 83 SHEET 5 AA310 PHE A 126 PHE A 133 -1 O LYS A 129 N ARG A 20 SHEET 6 AA310 PHE B 126 ASP B 134 -1 O PHE B 133 N LYS A 129 SHEET 7 AA310 CME B 16 VAL B 23 -1 N ARG B 20 O LYS B 129 SHEET 8 AA310 SER B 83 PHE B 91 -1 O SER B 83 N VAL B 23 SHEET 9 AA310 ASN B 95 LYS B 99 -1 O LYS B 99 N CME B 88 SHEET 10 AA310 GLU B 105 PRO B 109 -1 O PHE B 108 N LEU B 96 LINK C GLU A 15 N CME A 16 1555 1555 1.33 LINK C CME A 16 N LEU A 17 1555 1555 1.33 LINK C VAL A 87 N CME A 88 1555 1555 1.33 LINK C CME A 88 N ILE A 89 1555 1555 1.33 LINK C LYS A 129 N CME A 130 1555 1555 1.33 LINK C CME A 130 N AVAL A 131 1555 1555 1.33 LINK C CME A 130 N BVAL A 131 1555 1555 1.33 LINK C GLU B 15 N CME B 16 1555 1555 1.33 LINK C CME B 16 N LEU B 17 1555 1555 1.33 LINK C VAL B 87 N CME B 88 1555 1555 1.33 LINK C CME B 88 N ILE B 89 1555 1555 1.33 LINK C LYS B 129 N CME B 130 1555 1555 1.33 LINK C CME B 130 N AVAL B 131 1555 1555 1.33 LINK C CME B 130 N BVAL B 131 1555 1555 1.33 SITE 1 AC1 8 LYS A 36 ASN A 113 LEU A 114 GLU A 115 SITE 2 AC1 8 ALA A 116 HOH A 318 HOH A 378 LYS B 28 SITE 1 AC2 16 SER A 29 VAL A 31 HIS A 44 ASN A 46 SITE 2 AC2 16 ARG A 48 HIS A 52 ASN A 61 GLU A 71 SITE 3 AC2 16 ARG A 73 ASP A 123 GLY A 124 ASP A 125 SITE 4 AC2 16 HOH A 308 HOH A 321 HOH A 330 THR B 70 SITE 1 AC3 9 PRO A 101 ASP A 102 ASN B 10 LYS B 12 SITE 2 AC3 9 HOH B 313 HOH B 322 HOH B 324 HOH B 333 SITE 3 AC3 9 HOH B 337 SITE 1 AC4 15 GLN A 72 ASN A 113 HIS B 44 ASN B 46 SITE 2 AC4 15 ARG B 48 HIS B 52 ASN B 61 GLU B 71 SITE 3 AC4 15 ARG B 73 ASP B 123 GLY B 124 ASP B 125 SITE 4 AC4 15 HOH B 302 HOH B 303 HOH B 358 CRYST1 43.290 58.250 111.240 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.023100 0.000000 0.000000 0.00000 SCALE2 0.000000 0.017167 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008990 0.00000