HEADER TRANSFERASE 20-JAN-17 5MWW TITLE SIGMA1.1 DOMAIN OF SIGMAA FROM BACILLUS SUBTILIS COMPND MOL_ID: 1; COMPND 2 MOLECULE: RNA POLYMERASE SIGMA FACTOR SIGA; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BACILLUS SUBTILIS; SOURCE 3 ORGANISM_TAXID: 1423; SOURCE 4 GENE: SIGA, A9D36_07220, AX282_18545, B4122_2417, B4122_4198, SOURCE 5 B4417_0909, SAMN05878487_2592; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS AUTOINHIBITOR, TRANSFERASE EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR M.ZACHRDLA,P.PADRTA,A.RABATINOVA,H.SANDEROVA,I.BARVIK,L.KRASNY, AUTHOR 2 L.ZIDEK REVDAT 3 14-JUN-23 5MWW 1 REMARK REVDAT 2 26-JUL-17 5MWW 1 REVDAT 1 14-JUN-17 5MWW 0 JRNL AUTH M.ZACHRDLA,P.PADRTA,A.RABATINOVA,H.SANDEROVA,I.BARVIK, JRNL AUTH 2 L.KRASNY,L.ZIDEK JRNL TITL SOLUTION STRUCTURE OF DOMAIN 1.1 OF THE SIGMA (A) FACTOR JRNL TITL 2 FROM BACILLUS SUBTILIS IS PREFORMED FOR BINDING TO THE RNA JRNL TITL 3 POLYMERASE CORE. JRNL REF J. BIOL. CHEM. V. 292 11610 2017 JRNL REFN ESSN 1083-351X JRNL PMID 28539362 JRNL DOI 10.1074/JBC.M117.784074 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS REMARK 3 AUTHORS : BRUNGER A. T. ET.AL. REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5MWW COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 20-JAN-17. REMARK 100 THE DEPOSITION ID IS D_1200003145. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298.2 REMARK 210 PH : 6.6 REMARK 210 IONIC STRENGTH : 10 REMARK 210 PRESSURE : 1 ATM REMARK 210 SAMPLE CONTENTS : 0.6 MM [U-15N] SIGMA1.1, 10 MM REMARK 210 NA- SODIUM CHLORIDE, 20 MM NA- REMARK 210 SODIUM PHOSPHATE, 6 MM NA- REMARK 210 SODIUM AZIDE, 90% H2O/10% D2O; REMARK 210 0.8 MM [U-13C; U-15N] SIGMA1.1, REMARK 210 10 MM NA- SODIUM CHLORIDE, 20 MM REMARK 210 NA- SODIUM PHOSPHATE, 6 MM NA- REMARK 210 SODIUM AZIDE, 90% H2O/10% D2O; REMARK 210 0.8 MM [U-13C; U-15N] SIGMA1.1, REMARK 210 10 MM NA- SODIUM CHLORIDE, 20 MM REMARK 210 NA- SODIUM PHOSPHATE, 6 MM NA- REMARK 210 SODIUM AZIDE, 5 % NA- REMARK 210 POLYACRYLAMIDE GEL, 90% H2O/10% REMARK 210 D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-15N HSQC; 2D 1H-13C HSQC; REMARK 210 3D CBCA(CO)NH; 3D HNCACB; 3D REMARK 210 HN(CO)CA; 3D HNCO; 1D 1H; 3D REMARK 210 HCCH-TOCSY; 3D TOCSY-HSQC; 15N- REMARK 210 NOESY-HSQC; 13CALI-NOESY-HSQC; REMARK 210 13CARO-NOESY-HSQC; 3D H(CC)(CO) REMARK 210 NH; 3D (H)CC(CO)NH; 3D HNHA; 1H, REMARK 210 15N-IPAP; HN[C]-S3E; 13C- REMARK 210 DETECTED (H)CACO-IPAP REMARK 210 SPECTROMETER FIELD STRENGTH : 850 MHZ; 700 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE III REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NULL REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 150 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 0 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 5500 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: 0.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 H1 ALA A 1 OD2 ASP A 13 1.54 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 LYS A 3 151.87 -49.08 REMARK 500 1 SER A 64 -82.32 -74.17 REMARK 500 1 GLU A 65 -31.00 167.81 REMARK 500 1 GLU A 68 123.95 162.95 REMARK 500 1 THR A 69 -11.87 -171.55 REMARK 500 2 GLU A 7 78.96 75.37 REMARK 500 2 GLU A 42 72.60 79.13 REMARK 500 2 SER A 64 -82.01 -79.04 REMARK 500 2 GLU A 65 -35.42 161.97 REMARK 500 2 GLU A 68 138.36 179.92 REMARK 500 2 THR A 69 72.61 -150.56 REMARK 500 2 GLU A 70 -31.08 -138.69 REMARK 500 3 ASP A 2 -52.14 178.71 REMARK 500 3 GLU A 7 -175.14 62.55 REMARK 500 3 SER A 64 -75.23 -79.22 REMARK 500 3 GLU A 65 -19.28 163.17 REMARK 500 3 GLU A 68 -162.10 163.78 REMARK 500 4 ASP A 2 -32.78 -135.96 REMARK 500 4 GLU A 65 -33.70 74.89 REMARK 500 4 GLU A 68 166.25 74.53 REMARK 500 5 ASP A 2 -155.75 -106.81 REMARK 500 5 GLU A 42 78.81 62.29 REMARK 500 5 GLU A 65 -52.40 71.40 REMARK 500 5 GLU A 68 144.98 76.38 REMARK 500 6 SER A 64 -81.17 -74.69 REMARK 500 6 GLU A 65 -39.11 166.88 REMARK 500 6 GLU A 68 -168.28 56.57 REMARK 500 6 THR A 69 29.15 -160.61 REMARK 500 7 ASP A 2 -87.48 -164.20 REMARK 500 7 PHE A 41 -159.06 -100.32 REMARK 500 7 GLU A 65 -47.10 70.60 REMARK 500 7 HIS A 74 -171.84 66.74 REMARK 500 8 ASP A 2 -28.18 70.06 REMARK 500 8 PHE A 41 -162.93 -114.60 REMARK 500 8 SER A 64 -76.40 -78.06 REMARK 500 8 GLU A 65 -13.63 157.24 REMARK 500 8 GLU A 68 142.07 -178.34 REMARK 500 8 LEU A 72 -58.27 -139.51 REMARK 500 8 HIS A 74 106.07 179.72 REMARK 500 9 ASP A 2 -165.73 -109.41 REMARK 500 9 HIS A 6 -55.56 74.25 REMARK 500 9 GLU A 42 68.57 66.48 REMARK 500 9 GLU A 65 -38.90 73.91 REMARK 500 9 ASP A 71 72.39 -100.41 REMARK 500 10 ASP A 2 -88.37 64.89 REMARK 500 10 HIS A 6 -72.36 -155.41 REMARK 500 10 GLU A 7 97.66 -162.26 REMARK 500 10 SER A 64 -81.97 -70.46 REMARK 500 10 GLU A 65 -22.05 156.78 REMARK 500 10 THR A 69 19.22 -149.46 REMARK 500 REMARK 500 THIS ENTRY HAS 104 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 5 ARG A 26 0.11 SIDE CHAIN REMARK 500 6 ARG A 37 0.08 SIDE CHAIN REMARK 500 14 ARG A 26 0.09 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 34089 RELATED DB: BMRB REMARK 900 SIGMA1.1 DOMAIN OF SIGMAA FROM BACILLUS SUBTILIS DBREF1 5MWW A 1 71 UNP A0A063XB56_BACIU DBREF2 5MWW A A0A063XB56 2 72 SEQADV 5MWW LEU A 72 UNP A0A063XB5 EXPRESSION TAG SEQADV 5MWW GLU A 73 UNP A0A063XB5 EXPRESSION TAG SEQADV 5MWW HIS A 74 UNP A0A063XB5 EXPRESSION TAG SEQADV 5MWW HIS A 75 UNP A0A063XB5 EXPRESSION TAG SEQADV 5MWW HIS A 76 UNP A0A063XB5 EXPRESSION TAG SEQRES 1 A 76 ALA ASP LYS GLN THR HIS GLU THR GLU LEU THR PHE ASP SEQRES 2 A 76 GLN VAL LYS GLU GLN LEU THR GLU SER GLY LYS LYS ARG SEQRES 3 A 76 GLY VAL LEU THR TYR GLU GLU ILE ALA GLU ARG MET SER SEQRES 4 A 76 SER PHE GLU ILE GLU SER ASP GLN MET ASP GLU TYR TYR SEQRES 5 A 76 GLU PHE LEU GLY GLU GLN GLY VAL GLU LEU ILE SER GLU SEQRES 6 A 76 ASN GLU GLU THR GLU ASP LEU GLU HIS HIS HIS HELIX 1 AA1 THR A 11 GLY A 27 1 17 HELIX 2 AA2 TYR A 31 MET A 38 1 8 HELIX 3 AA3 SER A 39 PHE A 41 5 3 HELIX 4 AA4 GLU A 44 GLY A 59 1 16 SHEET 1 AA1 2 VAL A 28 THR A 30 0 SHEET 2 AA1 2 GLU A 61 ILE A 63 1 O GLU A 61 N LEU A 29 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1