HEADER CYTOKINE 22-JAN-17 5MXA TITLE STRUCTURE OF UNBOUND INTERLEUKIN-23 COMPND MOL_ID: 1; COMPND 2 MOLECULE: INTERLEUKIN-23 SUBUNIT ALPHA; COMPND 3 CHAIN: B; COMPND 4 SYNONYM: IL-23-A,INTERLEUKIN-23 SUBUNIT P19,IL-23P19; COMPND 5 ENGINEERED: YES; COMPND 6 OTHER_DETAILS: THE NATIVE SECRETION SIGNAL IS LIKELY CLEAVED OFF COMPND 7 BETWEEN RESIDUES 27 AND 28; COMPND 8 MOL_ID: 2; COMPND 9 MOLECULE: INTERLEUKIN-12 SUBUNIT BETA; COMPND 10 CHAIN: A; COMPND 11 SYNONYM: IL-12B,CYTOTOXIC LYMPHOCYTE MATURATION FACTOR 40 KDA COMPND 12 SUBUNIT,CLMF P40,IL-12 SUBUNIT P40,NK CELL STIMULATORY FACTOR CHAIN COMPND 13 2,NKSF2; COMPND 14 ENGINEERED: YES; COMPND 15 OTHER_DETAILS: THE NATIVE SECRETION SIGNAL IS LIKELY CLEAVED OFF COMPND 16 BETWEEN RESIDUES 22 AND 23 SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: IL23A, SGRF, UNQ2498/PRO5798; SOURCE 6 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 7 EXPRESSION_SYSTEM_COMMON: HUMAN; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 9606; SOURCE 9 EXPRESSION_SYSTEM_CELL_LINE: HEK293S MGAT1-/- TETR; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PCDNA4/TO; SOURCE 11 MOL_ID: 2; SOURCE 12 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 13 ORGANISM_COMMON: HUMAN; SOURCE 14 ORGANISM_TAXID: 9606; SOURCE 15 GENE: IL12B, NKSF2; SOURCE 16 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 17 EXPRESSION_SYSTEM_COMMON: HUMAN; SOURCE 18 EXPRESSION_SYSTEM_TAXID: 9606; SOURCE 19 EXPRESSION_SYSTEM_CELL_LINE: HEK293S MGAT1-/- TETR; SOURCE 20 EXPRESSION_SYSTEM_PLASMID: PCDNA4/TO KEYWDS CYTOKINE, EXTRACELLULAR, INFLAMMATION, FIBRONECTIN TYPE III EXPDTA X-RAY DIFFRACTION AUTHOR Y.BLOCH,S.N.SAVVIDES REVDAT 9 23-OCT-24 5MXA 1 REMARK REVDAT 8 17-JAN-24 5MXA 1 HETSYN LINK REVDAT 7 29-JUL-20 5MXA 1 COMPND REMARK HETNAM LINK REVDAT 7 2 1 SITE ATOM REVDAT 6 14-AUG-19 5MXA 1 REMARK REVDAT 5 07-FEB-18 5MXA 1 COMPND REVDAT 4 31-JAN-18 5MXA 1 JRNL REVDAT 3 10-JAN-18 5MXA 1 JRNL REVDAT 2 03-JAN-18 5MXA 1 JRNL REVDAT 1 20-DEC-17 5MXA 0 JRNL AUTH Y.BLOCH,L.BOUCHAREYCHAS,R.MERCERON,K.SKLADANOWSKA, JRNL AUTH 2 L.VAN DEN BOSSCHE,S.DETRY,S.GOVINDARAJAN,D.ELEWAUT, JRNL AUTH 3 F.HAERYNCK,M.DULLAERS,I.E.ADAMOPOULOS,S.N.SAVVIDES JRNL TITL STRUCTURAL ACTIVATION OF PRO-INFLAMMATORY HUMAN CYTOKINE JRNL TITL 2 IL-23 BY COGNATE IL-23 RECEPTOR ENABLES RECRUITMENT OF THE JRNL TITL 3 SHARED RECEPTOR IL-12R BETA 1. JRNL REF IMMUNITY V. 48 45 2018 JRNL REFN ISSN 1097-4180 JRNL PMID 29287995 JRNL DOI 10.1016/J.IMMUNI.2017.12.008 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH T.SHIROUZONO,M.CHIRIFU,C.NAKAMURA,Y.YAMAGATA,S.IKEMIZU REMARK 1 TITL PREPARATION, CRYSTALLIZATION AND PRELIMINARY X-RAY REMARK 1 TITL 2 DIFFRACTION STUDIES OF THE GLYCOSYLATED FORM OF HUMAN REMARK 1 TITL 3 INTERLEUKIN-23. REMARK 1 REF ACTA CRYSTALLOGR. SECT. F V. 68 432 2012 REMARK 1 REF 2 STRUCT. BIOL. CRYST. COMMUN. REMARK 1 REFN ESSN 1744-3091 REMARK 1 PMID 22505413 REMARK 1 DOI 10.1107/S1744309112005295 REMARK 2 REMARK 2 RESOLUTION. 2.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (DEV_2614: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 64.50 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.380 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 3 NUMBER OF REFLECTIONS : 20823 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.191 REMARK 3 R VALUE (WORKING SET) : 0.188 REMARK 3 FREE R VALUE : 0.229 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 8.240 REMARK 3 FREE R VALUE TEST SET COUNT : 1716 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 64.5161 - 5.7255 1.00 1631 153 0.1894 0.2315 REMARK 3 2 5.7255 - 4.5448 1.00 1602 143 0.1481 0.1770 REMARK 3 3 4.5448 - 3.9704 1.00 1609 149 0.1507 0.1761 REMARK 3 4 3.9704 - 3.6074 1.00 1595 143 0.1759 0.2074 REMARK 3 5 3.6074 - 3.3489 1.00 1584 148 0.1965 0.2576 REMARK 3 6 3.3489 - 3.1515 1.00 1597 141 0.2055 0.2614 REMARK 3 7 3.1515 - 2.9936 1.00 1590 139 0.2306 0.3074 REMARK 3 8 2.9936 - 2.8633 1.00 1602 146 0.2403 0.3023 REMARK 3 9 2.8633 - 2.7531 1.00 1571 139 0.2458 0.2674 REMARK 3 10 2.7531 - 2.6581 1.00 1591 136 0.2465 0.3064 REMARK 3 11 2.6581 - 2.5750 1.00 1592 145 0.2585 0.2909 REMARK 3 12 2.5750 - 2.5014 0.97 1543 134 0.2966 0.3739 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.360 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 25.760 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 69.45 REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.003 3539 REMARK 3 ANGLE : 0.730 4831 REMARK 3 CHIRALITY : 0.044 557 REMARK 3 PLANARITY : 0.004 608 REMARK 3 DIHEDRAL : 13.749 2121 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 10 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 23 THROUGH 94 ) REMARK 3 ORIGIN FOR THE GROUP (A): 34.3248 -63.7351 10.8684 REMARK 3 T TENSOR REMARK 3 T11: 0.6006 T22: 0.5799 REMARK 3 T33: 0.6282 T12: -0.0212 REMARK 3 T13: -0.1034 T23: 0.1567 REMARK 3 L TENSOR REMARK 3 L11: 4.0677 L22: 3.7598 REMARK 3 L33: 5.0192 L12: -1.9289 REMARK 3 L13: 3.7309 L23: 0.3908 REMARK 3 S TENSOR REMARK 3 S11: 0.0453 S12: -0.1727 S13: -1.2120 REMARK 3 S21: 0.0208 S22: 0.3620 S23: 0.6726 REMARK 3 S31: 0.1500 S32: -0.0410 S33: -0.3635 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 95 THROUGH 127 ) REMARK 3 ORIGIN FOR THE GROUP (A): 17.0019 -55.3313 11.2332 REMARK 3 T TENSOR REMARK 3 T11: 0.6207 T22: 0.8189 REMARK 3 T33: 0.7511 T12: -0.1149 REMARK 3 T13: -0.1046 T23: 0.2147 REMARK 3 L TENSOR REMARK 3 L11: 4.3873 L22: 2.6795 REMARK 3 L33: 2.4437 L12: -2.7244 REMARK 3 L13: 0.0864 L23: 0.1952 REMARK 3 S TENSOR REMARK 3 S11: 0.0022 S12: -1.1360 S13: -1.2665 REMARK 3 S21: 0.1969 S22: 0.1882 S23: 0.7606 REMARK 3 S31: 0.1787 S32: -0.5016 S33: -0.2544 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 128 THROUGH 173 ) REMARK 3 ORIGIN FOR THE GROUP (A): 12.6932 -42.3748 1.1578 REMARK 3 T TENSOR REMARK 3 T11: 0.4000 T22: 0.5561 REMARK 3 T33: 0.5729 T12: -0.1089 REMARK 3 T13: -0.0285 T23: 0.0435 REMARK 3 L TENSOR REMARK 3 L11: 4.3443 L22: 3.3113 REMARK 3 L33: 6.2882 L12: -2.3954 REMARK 3 L13: 2.2884 L23: -2.4218 REMARK 3 S TENSOR REMARK 3 S11: -0.0249 S12: -0.0962 S13: -0.0184 REMARK 3 S21: -0.0170 S22: -0.0304 S23: -0.1056 REMARK 3 S31: 0.0013 S32: 0.0998 S33: 0.0725 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 174 THROUGH 328 ) REMARK 3 ORIGIN FOR THE GROUP (A): -1.8214 -31.2870 1.4616 REMARK 3 T TENSOR REMARK 3 T11: 0.4562 T22: 0.5436 REMARK 3 T33: 0.5348 T12: -0.0477 REMARK 3 T13: 0.0467 T23: -0.0888 REMARK 3 L TENSOR REMARK 3 L11: 3.4550 L22: 1.6903 REMARK 3 L33: 1.9238 L12: -0.9451 REMARK 3 L13: 0.9754 L23: -0.2919 REMARK 3 S TENSOR REMARK 3 S11: 0.0223 S12: -0.6084 S13: 0.2024 REMARK 3 S21: 0.2156 S22: -0.1553 S23: 0.1444 REMARK 3 S31: -0.3289 S32: -0.3062 S33: 0.1313 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 27 THROUGH 51 ) REMARK 3 ORIGIN FOR THE GROUP (A): -16.3101 -40.2286 -14.7418 REMARK 3 T TENSOR REMARK 3 T11: 0.5707 T22: 0.7421 REMARK 3 T33: 0.6611 T12: 0.2021 REMARK 3 T13: -0.0153 T23: -0.0316 REMARK 3 L TENSOR REMARK 3 L11: 6.4857 L22: 5.5512 REMARK 3 L33: 4.0522 L12: 3.9938 REMARK 3 L13: -2.6729 L23: 0.1978 REMARK 3 S TENSOR REMARK 3 S11: -0.4017 S12: -0.4693 S13: 0.3825 REMARK 3 S21: 0.4425 S22: 0.1646 S23: 0.1466 REMARK 3 S31: -0.5299 S32: -0.4224 S33: -0.0019 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 64 THROUGH 85 ) REMARK 3 ORIGIN FOR THE GROUP (A): -0.5545 -41.6944 -21.7939 REMARK 3 T TENSOR REMARK 3 T11: 0.6098 T22: 0.7203 REMARK 3 T33: 0.5496 T12: 0.0015 REMARK 3 T13: 0.0426 T23: -0.1120 REMARK 3 L TENSOR REMARK 3 L11: 5.3877 L22: 3.7615 REMARK 3 L33: 2.4069 L12: 1.7435 REMARK 3 L13: 0.3817 L23: -2.5864 REMARK 3 S TENSOR REMARK 3 S11: 0.0596 S12: 0.0883 S13: -0.0913 REMARK 3 S21: -0.2855 S22: -0.0066 S23: -0.4348 REMARK 3 S31: 0.3669 S32: -0.0728 S33: -0.2073 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 86 THROUGH 105 ) REMARK 3 ORIGIN FOR THE GROUP (A): -9.1308 -46.3410 -25.2340 REMARK 3 T TENSOR REMARK 3 T11: 0.4755 T22: 0.6478 REMARK 3 T33: 0.4880 T12: 0.0172 REMARK 3 T13: -0.0439 T23: -0.1276 REMARK 3 L TENSOR REMARK 3 L11: 7.3971 L22: 7.4688 REMARK 3 L33: 2.7279 L12: 3.8539 REMARK 3 L13: 0.0053 L23: -0.3361 REMARK 3 S TENSOR REMARK 3 S11: -0.2771 S12: 1.1158 S13: -0.6470 REMARK 3 S21: -0.5307 S22: 0.3833 S23: -0.1922 REMARK 3 S31: 0.3771 S32: 0.2274 S33: 0.0360 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 106 THROUGH 138 ) REMARK 3 ORIGIN FOR THE GROUP (A): -19.3424 -51.6061 -18.2103 REMARK 3 T TENSOR REMARK 3 T11: 0.6264 T22: 0.7659 REMARK 3 T33: 0.7588 T12: -0.0104 REMARK 3 T13: -0.0172 T23: -0.0681 REMARK 3 L TENSOR REMARK 3 L11: 6.9633 L22: 3.0136 REMARK 3 L33: 5.3324 L12: 0.4613 REMARK 3 L13: 0.7068 L23: -2.7707 REMARK 3 S TENSOR REMARK 3 S11: -0.2876 S12: 0.3425 S13: -1.0156 REMARK 3 S21: -0.2112 S22: 0.5091 S23: 0.5763 REMARK 3 S31: 1.0849 S32: -0.9804 S33: -0.2292 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 150 THROUGH 154 ) REMARK 3 ORIGIN FOR THE GROUP (A): -9.4819 -67.1144 -13.1057 REMARK 3 T TENSOR REMARK 3 T11: 1.6040 T22: 0.8410 REMARK 3 T33: 1.7246 T12: 0.1427 REMARK 3 T13: 0.5756 T23: 0.0353 REMARK 3 L TENSOR REMARK 3 L11: 1.9372 L22: 2.8062 REMARK 3 L33: 2.0000 L12: 2.2727 REMARK 3 L13: -4.4976 L23: -5.2875 REMARK 3 S TENSOR REMARK 3 S11: -0.1246 S12: -0.1215 S13: -0.1400 REMARK 3 S21: -0.0512 S22: 0.0819 S23: 0.1496 REMARK 3 S31: 0.1988 S32: -0.0054 S33: 0.0238 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 155 THROUGH 189 ) REMARK 3 ORIGIN FOR THE GROUP (A): -9.4494 -44.9715 -14.7737 REMARK 3 T TENSOR REMARK 3 T11: 0.4554 T22: 0.6487 REMARK 3 T33: 0.5649 T12: 0.0524 REMARK 3 T13: -0.0261 T23: -0.0246 REMARK 3 L TENSOR REMARK 3 L11: 4.6839 L22: 2.3661 REMARK 3 L33: 4.9987 L12: 2.0606 REMARK 3 L13: -1.5245 L23: -2.2148 REMARK 3 S TENSOR REMARK 3 S11: -0.2762 S12: 0.1268 S13: -0.3522 REMARK 3 S21: -0.3635 S22: 0.1899 S23: -0.2970 REMARK 3 S31: 0.2476 S32: -0.6045 S33: 0.0628 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5MXA COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 23-JAN-17. REMARK 100 THE DEPOSITION ID IS D_1200003168. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 24-OCT-16 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 4.3 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PETRA III, EMBL C/O DESY REMARK 200 BEAMLINE : P14 (MX2) REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.976 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS 20161205 REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 20825 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.500 REMARK 200 RESOLUTION RANGE LOW (A) : 87.690 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 200 DATA REDUNDANCY : 10.27 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 24.5900 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.50 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.65 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.2 REMARK 200 DATA REDUNDANCY IN SHELL : 10.14 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 2.240 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: IL-23 FROM PDB 4OE8 REMARK 200 REMARK 200 REMARK: SINGLE, DIPYRAMIDAL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 60.16 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.09 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 100 MM CITRATE, 100 MM SODIUM REMARK 280 PHOSPHATE, 20.5 % PEG 1000, 200 MM LITHIUM SULPHATE, PH 4.3, REMARK 280 VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 287.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 61 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+5/6 REMARK 290 6555 X-Y,X,Z+1/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 29.24500 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 58.49000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 43.86750 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 73.11250 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 14.62250 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2990 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 23230 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: 1.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, A, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET B 1 REMARK 465 LEU B 2 REMARK 465 GLY B 3 REMARK 465 SER B 4 REMARK 465 ARG B 5 REMARK 465 ALA B 6 REMARK 465 VAL B 7 REMARK 465 MET B 8 REMARK 465 LEU B 9 REMARK 465 LEU B 10 REMARK 465 LEU B 11 REMARK 465 LEU B 12 REMARK 465 LEU B 13 REMARK 465 PRO B 14 REMARK 465 TRP B 15 REMARK 465 THR B 16 REMARK 465 ALA B 17 REMARK 465 GLN B 18 REMARK 465 GLY B 19 REMARK 465 ARG B 20 REMARK 465 ALA B 21 REMARK 465 VAL B 22 REMARK 465 PRO B 23 REMARK 465 GLY B 24 REMARK 465 GLY B 25 REMARK 465 SER B 26 REMARK 465 GLY B 52 REMARK 465 HIS B 53 REMARK 465 MET B 54 REMARK 465 ASP B 55 REMARK 465 LEU B 56 REMARK 465 ARG B 57 REMARK 465 GLU B 58 REMARK 465 GLU B 59 REMARK 465 GLY B 60 REMARK 465 ASP B 61 REMARK 465 GLU B 62 REMARK 465 GLU B 63 REMARK 465 GLY B 139 REMARK 465 HIS B 140 REMARK 465 HIS B 141 REMARK 465 TRP B 142 REMARK 465 GLU B 143 REMARK 465 THR B 144 REMARK 465 GLN B 145 REMARK 465 GLN B 146 REMARK 465 ILE B 147 REMARK 465 PRO B 148 REMARK 465 SER B 149 REMARK 465 GLY B 190 REMARK 465 THR B 191 REMARK 465 LYS B 192 REMARK 465 HIS B 193 REMARK 465 HIS B 194 REMARK 465 HIS B 195 REMARK 465 HIS B 196 REMARK 465 HIS B 197 REMARK 465 HIS B 198 REMARK 465 MET A 1 REMARK 465 CYS A 2 REMARK 465 HIS A 3 REMARK 465 GLN A 4 REMARK 465 GLN A 5 REMARK 465 LEU A 6 REMARK 465 VAL A 7 REMARK 465 ILE A 8 REMARK 465 SER A 9 REMARK 465 TRP A 10 REMARK 465 PHE A 11 REMARK 465 SER A 12 REMARK 465 LEU A 13 REMARK 465 VAL A 14 REMARK 465 PHE A 15 REMARK 465 LEU A 16 REMARK 465 ALA A 17 REMARK 465 SER A 18 REMARK 465 PRO A 19 REMARK 465 LEU A 20 REMARK 465 VAL A 21 REMARK 465 ALA A 22 REMARK 465 ASN A 248 REMARK 465 SER A 281 REMARK 465 LYS A 282 REMARK 465 ARG A 283 REMARK 465 GLU A 284 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLN B 80 CD OE1 NE2 REMARK 470 ARG B 83 NE CZ NH1 NH2 REMARK 470 GLN B 87 CD OE1 NE2 REMARK 470 LYS B 102 CD CE NZ REMARK 470 LEU B 150 CG CD1 CD2 REMARK 470 GLN B 154 CG CD OE1 NE2 REMARK 470 TRP B 156 CG CD1 CD2 NE1 CE2 CE3 CZ2 REMARK 470 TRP B 156 CZ3 CH2 REMARK 470 ASP A 40 CG OD1 OD2 REMARK 470 LYS A 121 CD CE NZ REMARK 470 LYS A 124 CG CD CE NZ REMARK 470 ARG A 130 NE CZ NH1 NH2 REMARK 470 LYS A 157 CE NZ REMARK 470 ASP A 183 CG OD1 OD2 REMARK 470 LYS A 185 CE NZ REMARK 470 LYS A 247 CE NZ REMARK 470 SER A 249 OG REMARK 470 ARG A 250 CG CD NE CZ NH1 NH2 REMARK 470 GLN A 251 CG CD OE1 NE2 REMARK 470 GLU A 253 CG CD OE1 OE2 REMARK 470 LYS A 280 CG CD CE NZ REMARK 470 LYS A 285 CD CE NZ REMARK 470 LYS A 286 CE NZ REMARK 470 LYS A 293 NZ REMARK 470 LYS A 302 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 PRO B 28 CD PRO B 28 N -0.219 REMARK 500 PRO B 69 CD PRO B 69 N 0.196 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA B 29 71.64 72.17 REMARK 500 HIS B 48 76.45 -159.22 REMARK 500 ASN B 85 71.32 -159.69 REMARK 500 SER B 151 67.17 70.28 REMARK 500 LYS A 27 146.19 -176.17 REMARK 500 ASP A 63 -126.99 56.30 REMARK 500 LYS A 92 71.49 -119.37 REMARK 500 LEU A 97 -75.17 -106.55 REMARK 500 ASN A 135 -169.95 -169.63 REMARK 500 LYS A 217 -114.05 53.84 REMARK 500 SER A 317 -162.41 -124.94 REMARK 500 REMARK 500 REMARK: NULL DBREF 5MXA B 1 189 UNP Q9NPF7 IL23A_HUMAN 1 189 DBREF 5MXA A 1 328 UNP P29460 IL12B_HUMAN 1 328 SEQADV 5MXA GLY B 190 UNP Q9NPF7 EXPRESSION TAG SEQADV 5MXA THR B 191 UNP Q9NPF7 EXPRESSION TAG SEQADV 5MXA LYS B 192 UNP Q9NPF7 EXPRESSION TAG SEQADV 5MXA HIS B 193 UNP Q9NPF7 EXPRESSION TAG SEQADV 5MXA HIS B 194 UNP Q9NPF7 EXPRESSION TAG SEQADV 5MXA HIS B 195 UNP Q9NPF7 EXPRESSION TAG SEQADV 5MXA HIS B 196 UNP Q9NPF7 EXPRESSION TAG SEQADV 5MXA HIS B 197 UNP Q9NPF7 EXPRESSION TAG SEQADV 5MXA HIS B 198 UNP Q9NPF7 EXPRESSION TAG SEQRES 1 B 198 MET LEU GLY SER ARG ALA VAL MET LEU LEU LEU LEU LEU SEQRES 2 B 198 PRO TRP THR ALA GLN GLY ARG ALA VAL PRO GLY GLY SER SEQRES 3 B 198 SER PRO ALA TRP THR GLN CYS GLN GLN LEU SER GLN LYS SEQRES 4 B 198 LEU CYS THR LEU ALA TRP SER ALA HIS PRO LEU VAL GLY SEQRES 5 B 198 HIS MET ASP LEU ARG GLU GLU GLY ASP GLU GLU THR THR SEQRES 6 B 198 ASN ASP VAL PRO HIS ILE GLN CYS GLY ASP GLY CYS ASP SEQRES 7 B 198 PRO GLN GLY LEU ARG ASP ASN SER GLN PHE CYS LEU GLN SEQRES 8 B 198 ARG ILE HIS GLN GLY LEU ILE PHE TYR GLU LYS LEU LEU SEQRES 9 B 198 GLY SER ASP ILE PHE THR GLY GLU PRO SER LEU LEU PRO SEQRES 10 B 198 ASP SER PRO VAL GLY GLN LEU HIS ALA SER LEU LEU GLY SEQRES 11 B 198 LEU SER GLN LEU LEU GLN PRO GLU GLY HIS HIS TRP GLU SEQRES 12 B 198 THR GLN GLN ILE PRO SER LEU SER PRO SER GLN PRO TRP SEQRES 13 B 198 GLN ARG LEU LEU LEU ARG PHE LYS ILE LEU ARG SER LEU SEQRES 14 B 198 GLN ALA PHE VAL ALA VAL ALA ALA ARG VAL PHE ALA HIS SEQRES 15 B 198 GLY ALA ALA THR LEU SER PRO GLY THR LYS HIS HIS HIS SEQRES 16 B 198 HIS HIS HIS SEQRES 1 A 328 MET CYS HIS GLN GLN LEU VAL ILE SER TRP PHE SER LEU SEQRES 2 A 328 VAL PHE LEU ALA SER PRO LEU VAL ALA ILE TRP GLU LEU SEQRES 3 A 328 LYS LYS ASP VAL TYR VAL VAL GLU LEU ASP TRP TYR PRO SEQRES 4 A 328 ASP ALA PRO GLY GLU MET VAL VAL LEU THR CYS ASP THR SEQRES 5 A 328 PRO GLU GLU ASP GLY ILE THR TRP THR LEU ASP GLN SER SEQRES 6 A 328 SER GLU VAL LEU GLY SER GLY LYS THR LEU THR ILE GLN SEQRES 7 A 328 VAL LYS GLU PHE GLY ASP ALA GLY GLN TYR THR CYS HIS SEQRES 8 A 328 LYS GLY GLY GLU VAL LEU SER HIS SER LEU LEU LEU LEU SEQRES 9 A 328 HIS LYS LYS GLU ASP GLY ILE TRP SER THR ASP ILE LEU SEQRES 10 A 328 LYS ASP GLN LYS GLU PRO LYS ASN LYS THR PHE LEU ARG SEQRES 11 A 328 CYS GLU ALA LYS ASN TYR SER GLY ARG PHE THR CYS TRP SEQRES 12 A 328 TRP LEU THR THR ILE SER THR ASP LEU THR PHE SER VAL SEQRES 13 A 328 LYS SER SER ARG GLY SER SER ASP PRO GLN GLY VAL THR SEQRES 14 A 328 CYS GLY ALA ALA THR LEU SER ALA GLU ARG VAL ARG GLY SEQRES 15 A 328 ASP ASN LYS GLU TYR GLU TYR SER VAL GLU CYS GLN GLU SEQRES 16 A 328 ASP SER ALA CYS PRO ALA ALA GLU GLU SER LEU PRO ILE SEQRES 17 A 328 GLU VAL MET VAL ASP ALA VAL HIS LYS LEU LYS TYR GLU SEQRES 18 A 328 ASN TYR THR SER SER PHE PHE ILE ARG ASP ILE ILE LYS SEQRES 19 A 328 PRO ASP PRO PRO LYS ASN LEU GLN LEU LYS PRO LEU LYS SEQRES 20 A 328 ASN SER ARG GLN VAL GLU VAL SER TRP GLU TYR PRO ASP SEQRES 21 A 328 THR TRP SER THR PRO HIS SER TYR PHE SER LEU THR PHE SEQRES 22 A 328 CYS VAL GLN VAL GLN GLY LYS SER LYS ARG GLU LYS LYS SEQRES 23 A 328 ASP ARG VAL PHE THR ASP LYS THR SER ALA THR VAL ILE SEQRES 24 A 328 CYS ARG LYS ASN ALA SER ILE SER VAL ARG ALA GLN ASP SEQRES 25 A 328 ARG TYR TYR SER SER SER TRP SER GLU TRP ALA SER VAL SEQRES 26 A 328 PRO CYS SER HET NAG C 1 26 HET NAG C 2 26 HET BMA C 3 20 HET MAN C 4 21 HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETNAM BMA BETA-D-MANNOPYRANOSE HETNAM MAN ALPHA-D-MANNOPYRANOSE HETSYN NAG N-ACETYL-BETA-D-GLUCOSAMINE; 2-ACETAMIDO-2-DEOXY-BETA- HETSYN 2 NAG D-GLUCOSE; 2-ACETAMIDO-2-DEOXY-D-GLUCOSE; 2-ACETAMIDO- HETSYN 3 NAG 2-DEOXY-GLUCOSE; N-ACETYL-D-GLUCOSAMINE HETSYN BMA BETA-D-MANNOSE; D-MANNOSE; MANNOSE HETSYN MAN ALPHA-D-MANNOSE; D-MANNOSE; MANNOSE FORMUL 3 NAG 2(C8 H15 N O6) FORMUL 3 BMA C6 H12 O6 FORMUL 3 MAN C6 H12 O6 FORMUL 4 HOH *36(H2 O) HELIX 1 AA1 ALA B 29 SER B 46 1 18 HELIX 2 AA2 GLN B 72 GLY B 76 5 5 HELIX 3 AA3 ASP B 78 GLY B 105 1 28 HELIX 4 AA4 SER B 106 GLY B 111 1 6 HELIX 5 AA5 PRO B 120 GLN B 136 1 17 HELIX 6 AA6 GLN B 154 LEU B 187 1 34 HELIX 7 AA7 PHE A 228 ILE A 232 5 5 SHEET 1 AA1 6 TRP A 24 LYS A 27 0 SHEET 2 AA1 6 VAL A 30 ASP A 36 -1 O VAL A 30 N LYS A 27 SHEET 3 AA1 6 GLU A 95 GLU A 108 1 O LEU A 101 N TYR A 31 SHEET 4 AA1 6 GLY A 86 LYS A 92 -1 N TYR A 88 O SER A 100 SHEET 5 AA1 6 ILE A 58 LEU A 62 -1 N THR A 59 O HIS A 91 SHEET 6 AA1 6 SER A 65 SER A 71 -1 O LEU A 69 N TRP A 60 SHEET 1 AA2 4 TRP A 24 LYS A 27 0 SHEET 2 AA2 4 VAL A 30 ASP A 36 -1 O VAL A 30 N LYS A 27 SHEET 3 AA2 4 GLU A 95 GLU A 108 1 O LEU A 101 N TYR A 31 SHEET 4 AA2 4 ILE A 111 TRP A 112 -1 O ILE A 111 N GLU A 108 SHEET 1 AA3 2 GLU A 44 THR A 49 0 SHEET 2 AA3 2 THR A 74 VAL A 79 -1 O LEU A 75 N LEU A 48 SHEET 1 AA4 4 ARG A 130 GLU A 132 0 SHEET 2 AA4 4 ARG A 139 THR A 146 -1 O TRP A 143 N ARG A 130 SHEET 3 AA4 4 ASN A 184 GLU A 195 -1 O TYR A 187 N THR A 146 SHEET 4 AA4 4 THR A 174 ARG A 181 -1 N SER A 176 O GLU A 188 SHEET 1 AA5 7 ARG A 130 GLU A 132 0 SHEET 2 AA5 7 ARG A 139 THR A 146 -1 O TRP A 143 N ARG A 130 SHEET 3 AA5 7 ASN A 184 GLU A 195 -1 O TYR A 187 N THR A 146 SHEET 4 AA5 7 GLN A 166 CYS A 170 -1 N THR A 169 O GLN A 194 SHEET 5 AA5 7 LEU A 152 ARG A 160 -1 N ARG A 160 O GLN A 166 SHEET 6 AA5 7 ILE A 208 HIS A 216 -1 O MET A 211 N LYS A 157 SHEET 7 AA5 7 LYS A 219 PHE A 227 -1 O PHE A 227 N ILE A 208 SHEET 1 AA6 3 LYS A 239 LEU A 246 0 SHEET 2 AA6 3 GLN A 251 GLU A 257 -1 O SER A 255 N GLN A 242 SHEET 3 AA6 3 SER A 295 ILE A 299 -1 O ALA A 296 N VAL A 254 SHEET 1 AA7 4 LYS A 286 THR A 291 0 SHEET 2 AA7 4 LEU A 271 GLN A 278 -1 N VAL A 275 O VAL A 289 SHEET 3 AA7 4 SER A 305 ASP A 312 -1 O GLN A 311 N THR A 272 SHEET 4 AA7 4 ALA A 323 PRO A 326 -1 O ALA A 323 N VAL A 308 SSBOND 1 CYS B 73 CYS A 199 1555 1555 2.03 SSBOND 2 CYS B 77 CYS B 89 1555 1555 2.04 SSBOND 3 CYS A 50 CYS A 90 1555 1555 2.04 SSBOND 4 CYS A 131 CYS A 142 1555 1555 2.04 SSBOND 5 CYS A 170 CYS A 193 1555 1555 2.04 SSBOND 6 CYS A 300 CYS A 327 1555 1555 2.03 LINK ND2 ASN A 222 C1 NAG C 1 1555 1555 1.44 LINK O4 NAG C 1 C1 NAG C 2 1555 1555 1.45 LINK O4 NAG C 2 C1 BMA C 3 1555 1555 1.45 LINK O3 BMA C 3 C1 MAN C 4 1555 1555 1.44 CISPEP 1 GLU B 112 PRO B 113 0 0.81 CISPEP 2 GLU A 122 PRO A 123 0 4.22 CISPEP 3 THR A 264 PRO A 265 0 -0.42 CRYST1 109.849 109.849 87.735 90.00 90.00 120.00 P 61 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009103 0.005256 0.000000 0.00000 SCALE2 0.000000 0.010512 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011398 0.00000