HEADER HYDROLASE 24-JAN-17 5MXR TITLE CRYSTAL STRUCTURE OF THE ACQUIRED VIM-2 METALLO-BETA-LACTAMASE IN TITLE 2 COMPLEX WITH ANT-330 INHIBITOR COMPND MOL_ID: 1; COMPND 2 MOLECULE: BETA-LACTAMASE VIM-2; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: VIM-2 MATURE PROTEIN; COMPND 5 SYNONYM: CLASS B BETA-LACTAMASE,CLASS B CARBAPENEMASE VIM-2,METALLO COMPND 6 BETA LACTAMASE VIM-2,METALLO BETA-LACTAMASE,METALLO-BETA-LACTAMASE, COMPND 7 METALLO-BETA-LACTAMASE VIM-2,METALLO-BETA-LACTAMASE VIM-2,VIM-2 COMPND 8 METALLO-BETA-LACTAMASE,VIM-2 PROTEIN; COMPND 9 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PSEUDOMONAS AERUGINOSA; SOURCE 3 ORGANISM_TAXID: 287; SOURCE 4 GENE: BLAVIM-2, BLA VIM-2, BLA-VIM-2, BLASVIM-2, BLAVIM2, BLM, VIM- SOURCE 5 2, VIM-2, PAERUG_P32_LONDON_17_VIM_2_10_11_06255; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET-9A KEYWDS METALLO-BETA-LACTAMASE FOLD, ZINC-DEPENDENT HYDROLASE, PFAM00753, KEYWDS 2 ALPHA-BETA-BETA-ALPHA SANDWICH, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR J.D.DOCQUIER,F.DE LUCA,M.BENVENUTI,F.DI PISA,C.POZZI,S.MANGANI REVDAT 3 24-APR-19 5MXR 1 JRNL REVDAT 2 05-DEC-18 5MXR 1 JRNL REMARK REVDAT 1 14-MAR-18 5MXR 0 JRNL AUTH S.LEIRIS,A.COELHO,J.CASTANDET,M.BAYET,C.LOZANO,J.BOUGNON, JRNL AUTH 2 J.BOUSQUET,M.EVERETT,M.LEMONNIER,N.SPRYNSKI,M.ZALACAIN, JRNL AUTH 3 T.D.PALLIN,M.C.CRAMP,N.JENNINGS,G.RAPHY,M.W.JONES, JRNL AUTH 4 R.PATTIPATI,B.SHANKAR,R.SIVASUBRAHMANYAM,A.K.SOODHAGANI, JRNL AUTH 5 R.R.JUVENTHALA,N.POTTABATHINI,S.POTHUKANURI,M.BENVENUTI, JRNL AUTH 6 C.POZZI,S.MANGANI,F.DE LUCA,G.CERBONI,J.D.DOCQUIER, JRNL AUTH 7 D.T.DAVIES JRNL TITL SAR STUDIES LEADING TO THE IDENTIFICATION OF A NOVEL SERIES JRNL TITL 2 OF METALLO-BETA-LACTAMASE INHIBITORS FOR THE TREATMENT OF JRNL TITL 3 CARBAPENEM-RESISTANT ENTEROBACTERIACEAE INFECTIONS THAT JRNL TITL 4 DISPLAY EFFICACY IN AN ANIMAL INFECTION MODEL. JRNL REF ACS INFECT DIS. V. 5 131 2019 JRNL REFN ESSN 2373-8227 JRNL PMID 30427656 JRNL DOI 10.1021/ACSINFECDIS.8B00246 REMARK 2 REMARK 2 RESOLUTION. 1.75 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0103 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.75 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 55.58 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 3 NUMBER OF REFLECTIONS : 20274 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.200 REMARK 3 R VALUE (WORKING SET) : 0.198 REMARK 3 FREE R VALUE : 0.242 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1100 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.75 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.80 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1482 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.23 REMARK 3 BIN R VALUE (WORKING SET) : 0.3050 REMARK 3 BIN FREE R VALUE SET COUNT : 70 REMARK 3 BIN FREE R VALUE : 0.3160 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1748 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 34 REMARK 3 SOLVENT ATOMS : 120 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 23.79 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.01000 REMARK 3 B22 (A**2) : 0.00000 REMARK 3 B33 (A**2) : 0.01000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.138 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.133 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.109 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 3.554 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.953 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.936 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1841 ; 0.019 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 1689 ; 0.003 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2523 ; 1.968 ; 1.968 REMARK 3 BOND ANGLES OTHERS (DEGREES): 3876 ; 1.074 ; 3.002 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 235 ; 6.664 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 79 ;37.926 ;23.797 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 261 ;16.091 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 11 ;22.202 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 284 ; 0.119 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2139 ; 0.010 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 418 ; 0.002 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES : REFINED INDIVIDUALLY REMARK 4 REMARK 4 5MXR COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 24-JAN-17. REMARK 100 THE DEPOSITION ID IS D_1200003187. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 03-FEB-14 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I04 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97949 REMARK 200 MONOCHROMATOR : SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : IMOSFLM 7.2.1 REMARK 200 DATA SCALING SOFTWARE : AIMLESS 0.3.11 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 21376 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.750 REMARK 200 RESOLUTION RANGE LOW (A) : 55.580 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 200 DATA REDUNDANCY : 6.600 REMARK 200 R MERGE (I) : 0.14600 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 7.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.75 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.78 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.7 REMARK 200 DATA REDUNDANCY IN SHELL : 6.00 REMARK 200 R MERGE FOR SHELL (I) : 0.72900 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: MOLREP 11.4.3 REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 41.69 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.11 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M CACODYLATE, 0.2 M NA-ACETATE, 5 REMARK 280 MM DTT, 26% PEG8000, PH 6.5, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 2 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X,Y,-Z REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z+1/2 REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 33.82500 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 39.19000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 39.41000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 33.82500 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 39.19000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 39.41000 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 33.82500 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 39.19000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 39.41000 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 33.82500 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 39.19000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 39.41000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 460 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 9690 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -106.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ASP A 78 CG REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 ZN ZN A 303 O ACT A 304 1.68 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O SER A 263 O SER A 263 2555 2.11 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP A 124 CB - CG - OD1 ANGL. DEV. = 6.4 DEGREES REMARK 500 ARG A 166 NE - CZ - NH1 ANGL. DEV. = 6.5 DEGREES REMARK 500 ARG A 166 NE - CZ - NH2 ANGL. DEV. = -5.2 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 84 146.08 70.78 REMARK 500 TRP A 87 66.11 68.64 REMARK 500 ALA A 178 -107.01 -153.67 REMARK 500 REMARK 500 REMARK: NULL REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 JTY A 306 REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 301 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 114 NE2 REMARK 620 2 HIS A 116 ND1 99.8 REMARK 620 3 HIS A 179 NE2 101.7 111.0 REMARK 620 4 HOH A 413 O 108.9 115.4 117.6 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 302 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 118 OD2 REMARK 620 2 CYS A 198 SG 98.4 REMARK 620 3 HIS A 240 NE2 88.3 92.4 REMARK 620 4 JTY A 305 N4 95.6 165.9 89.2 REMARK 620 5 JTY A 305 O7 175.0 86.3 93.1 79.7 REMARK 620 6 HOH A 413 O 81.8 96.1 167.8 84.7 96.2 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 303 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 153 NE2 REMARK 620 2 JTY A 306 O8 93.0 REMARK 620 3 JTY A 306 O7 127.4 54.0 REMARK 620 4 HIS A 251 ND1 43.2 87.3 90.5 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ACT A 304 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue JTY A 305 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue JTY A 306 DBREF 5MXR A 32 263 UNP Q9K2N0 Q9K2N0_PSEAI 32 263 SEQRES 1 A 232 GLU TYR PRO THR VAL SER GLU ILE PRO VAL GLY GLU VAL SEQRES 2 A 232 ARG LEU TYR GLN ILE ALA ASP GLY VAL TRP SER HIS ILE SEQRES 3 A 232 ALA THR GLN SER PHE ASP GLY ALA VAL TYR PRO SER ASN SEQRES 4 A 232 GLY LEU ILE VAL ARG ASP GLY ASP GLU LEU LEU LEU ILE SEQRES 5 A 232 ASP THR ALA TRP GLY ALA LYS ASN THR ALA ALA LEU LEU SEQRES 6 A 232 ALA GLU ILE GLU LYS GLN ILE GLY LEU PRO VAL THR ARG SEQRES 7 A 232 ALA VAL SER THR HIS PHE HIS ASP ASP ARG VAL GLY GLY SEQRES 8 A 232 VAL ASP VAL LEU ARG ALA ALA GLY VAL ALA THR TYR ALA SEQRES 9 A 232 SER PRO SER THR ARG ARG LEU ALA GLU VAL GLU GLY ASN SEQRES 10 A 232 GLU ILE PRO THR HIS SER LEU GLU GLY LEU SER SER SER SEQRES 11 A 232 GLY ASP ALA VAL ARG PHE GLY PRO VAL GLU LEU PHE TYR SEQRES 12 A 232 PRO GLY ALA ALA HIS SER THR ASP ASN LEU VAL VAL TYR SEQRES 13 A 232 VAL PRO SER ALA SER VAL LEU TYR GLY GLY CYS ALA ILE SEQRES 14 A 232 TYR GLU LEU SER ARG THR SER ALA GLY ASN VAL ALA ASP SEQRES 15 A 232 ALA ASP LEU ALA GLU TRP PRO THR SER ILE GLU ARG ILE SEQRES 16 A 232 GLN GLN HIS TYR PRO GLU ALA GLN PHE VAL ILE PRO GLY SEQRES 17 A 232 HIS GLY LEU PRO GLY GLY LEU ASP LEU LEU LYS HIS THR SEQRES 18 A 232 THR ASN VAL VAL LYS ALA HIS THR ASN ARG SER HET ZN A 301 1 HET ZN A 302 1 HET ZN A 303 1 HET ACT A 304 4 HET JTY A 305 18 HET JTY A 306 9 HETNAM ZN ZINC ION HETNAM ACT ACETATE ION HETNAM JTY 5-(PHENYLSULFONYLAMINO)-1,3-THIAZOLE-4-CARBOXYLIC ACID FORMUL 2 ZN 3(ZN 2+) FORMUL 5 ACT C2 H3 O2 1- FORMUL 6 JTY 2(C10 H8 N2 O4 S2) FORMUL 8 HOH *120(H2 O) HELIX 1 AA1 THR A 35 ILE A 39 5 5 HELIX 2 AA2 GLY A 88 ILE A 103 1 16 HELIX 3 AA3 HIS A 116 GLY A 121 1 6 HELIX 4 AA4 GLY A 122 ALA A 129 1 8 HELIX 5 AA5 SER A 136 GLY A 147 1 12 HELIX 6 AA6 CYS A 198 ILE A 200 5 3 HELIX 7 AA7 GLU A 218 TYR A 230 1 13 HELIX 8 AA8 LEU A 246 ASN A 261 1 16 SHEET 1 AA1 7 ARG A 45 ALA A 50 0 SHEET 2 AA1 7 VAL A 53 PHE A 62 -1 O ILE A 57 N ARG A 45 SHEET 3 AA1 7 ALA A 65 ASP A 76 -1 O ILE A 73 N TRP A 54 SHEET 4 AA1 7 GLU A 79 ILE A 83 -1 O ILE A 83 N LEU A 72 SHEET 5 AA1 7 VAL A 107 VAL A 111 1 O ARG A 109 N LEU A 82 SHEET 6 AA1 7 ALA A 132 ALA A 135 1 O ALA A 132 N THR A 108 SHEET 7 AA1 7 HIS A 153 SER A 154 1 O HIS A 153 N THR A 133 SHEET 1 AA2 5 ASP A 163 PHE A 167 0 SHEET 2 AA2 5 VAL A 170 TYR A 174 -1 O VAL A 170 N PHE A 167 SHEET 3 AA2 5 VAL A 185 VAL A 188 -1 O TYR A 187 N GLU A 171 SHEET 4 AA2 5 VAL A 193 GLY A 197 -1 O TYR A 195 N VAL A 186 SHEET 5 AA2 5 PHE A 235 PRO A 238 1 O PHE A 235 N LEU A 194 LINK NE2 HIS A 114 ZN ZN A 301 1555 1555 2.14 LINK ND1 HIS A 116 ZN ZN A 301 1555 1555 1.98 LINK OD2 ASP A 118 ZN ZN A 302 1555 1555 2.22 LINK NE2 HIS A 153 ZN ZN A 303 1555 1555 2.03 LINK NE2 HIS A 179 ZN ZN A 301 1555 1555 2.07 LINK SG CYS A 198 ZN ZN A 302 1555 1555 2.62 LINK NE2 HIS A 240 ZN ZN A 302 1555 1555 2.25 LINK ZN ZN A 301 O HOH A 413 1555 1555 1.93 LINK ZN ZN A 302 N4 JTY A 305 1555 1555 2.17 LINK ZN ZN A 302 O7 JTY A 305 1555 1555 2.07 LINK ZN ZN A 302 O HOH A 413 1555 1555 2.39 LINK ZN ZN A 303 O8 JTY A 306 1555 1555 2.66 LINK ZN ZN A 303 O7 JTY A 306 1555 1555 1.98 LINK ND1 HIS A 251 ZN ZN A 303 1555 6445 2.02 SITE 1 AC1 4 HIS A 114 HIS A 116 HIS A 179 HOH A 413 SITE 1 AC2 5 ASP A 118 CYS A 198 HIS A 240 JTY A 305 SITE 2 AC2 5 HOH A 413 SITE 1 AC3 4 HIS A 153 HIS A 251 ACT A 304 JTY A 306 SITE 1 AC4 9 ALA A 132 THR A 133 THR A 152 HIS A 153 SITE 2 AC4 9 ASP A 247 HIS A 251 ZN A 303 JTY A 306 SITE 3 AC4 9 HOH A 410 SITE 1 AC5 14 PHE A 62 TYR A 67 TRP A 87 ASP A 118 SITE 2 AC5 14 HIS A 179 CYS A 198 ARG A 205 GLY A 209 SITE 3 AC5 14 ASN A 210 HIS A 240 ZN A 302 HOH A 401 SITE 4 AC5 14 HOH A 413 HOH A 480 SITE 1 AC6 10 GLY A 130 ALA A 132 HIS A 153 THR A 206 SITE 2 AC6 10 HIS A 251 ASN A 254 VAL A 255 ZN A 303 SITE 3 AC6 10 ACT A 304 HOH A 412 CRYST1 67.650 78.380 78.820 90.00 90.00 90.00 I 2 2 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014782 0.000000 0.000000 0.00000 SCALE2 0.000000 0.012758 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012687 0.00000