HEADER PLANT PROTEIN 25-JAN-17 5MXW TITLE CRYSTAL STRUCTURE OF YELLOW LUPIN LLPR-10.2B PROTEIN IN COMPLEX WITH TITLE 2 MELATONIN AND TRANS-ZEATIN. COMPND MOL_ID: 1; COMPND 2 MOLECULE: CLASS 10 PLANT PATHOGENESIS-RELATED PROTEIN; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: PR10.2B; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: LUPINUS LUTEUS; SOURCE 3 ORGANISM_COMMON: EUROPEAN YELLOW LUPINE; SOURCE 4 ORGANISM_TAXID: 3873; SOURCE 5 GENE: PR10.2B, YPR10.2B; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET3A KEYWDS PLANT PROTEIN, PHYTOHORMON BINDING PROTEIN, PR-10 PROTEIN, MELATONIN EXPDTA X-RAY DIFFRACTION AUTHOR J.SLIWIAK,M.SIKORSKI,M.JASKOLSKI REVDAT 5 17-JAN-24 5MXW 1 REMARK REVDAT 4 08-AUG-18 5MXW 1 REMARK REVDAT 3 01-AUG-18 5MXW 1 REMARK CRYST1 REVDAT 2 20-JUN-18 5MXW 1 JRNL REVDAT 1 18-APR-18 5MXW 0 JRNL AUTH J.SLIWIAK,M.SIKORSKI,M.JASKOLSKI JRNL TITL PR-10 PROTEINS AS POTENTIAL MEDIATORS OF MELATONIN-CYTOKININ JRNL TITL 2 CROSS-TALK IN PLANTS: CRYSTALLOGRAPHIC STUDIES OF LLPR-10.2B JRNL TITL 3 ISOFORM FROM YELLOW LUPINE. JRNL REF FEBS J. V. 285 1907 2018 JRNL REFN ISSN 1742-4658 JRNL PMID 29630775 JRNL DOI 10.1111/FEBS.14455 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH J.SLIWIAK,Z.DAUTER,M.JASKOLSKI REMARK 1 TITL CRYSTAL STRUCTURE OF HYP-1, A HYPERICUM PERFORATUM PR-10 REMARK 1 TITL 2 PROTEIN, IN COMPLEX WITH MELATONIN. REMARK 1 REF FRONT PLANT SCI V. 7 668 2016 REMARK 1 REFN ESSN 1664-462X REMARK 1 PMID 27242869 REMARK 1 DOI 10.3389/FPLS.2016.00668 REMARK 1 REFERENCE 2 REMARK 1 AUTH J.SLIWIAK,R.DOLOT,K.MICHALSKA,K.SZPOTKOWSKI,G.BUJACZ, REMARK 1 AUTH 2 M.SIKORSKI,M.JASKOLSKI REMARK 1 TITL CRYSTALLOGRAPHIC AND CD PROBING OF LIGAND-INDUCED REMARK 1 TITL 2 CONFORMATIONAL CHANGES IN A PLANT PR-10 PROTEIN. REMARK 1 REF J. STRUCT. BIOL. V. 193 55 2016 REMARK 1 REFN ESSN 1095-8657 REMARK 1 PMID 26644353 REMARK 1 DOI 10.1016/J.JSB.2015.11.008 REMARK 1 REFERENCE 3 REMARK 1 AUTH M.RUSZKOWSKI,J.SLIWIAK,A.CIESIELSKA,J.BARCISZEWSKI, REMARK 1 AUTH 2 M.SIKORSKI,M.JASKOLSKI REMARK 1 TITL SPECIFIC BINDING OF GIBBERELLIC ACID BY CYTOKININ-SPECIFIC REMARK 1 TITL 2 BINDING PROTEINS: A NEW ASPECT OF PLANT HORMONE-BINDING REMARK 1 TITL 3 PROTEINS WITH THE PR-10 FOLD. REMARK 1 REF ACTA CRYSTALLOGR. D BIOL. V. 70 2032 2014 REMARK 1 REF 2 CRYSTALLOGR. REMARK 1 REFN ESSN 1399-0047 REMARK 1 PMID 25004979 REMARK 1 DOI 10.1107/S1399004714010578 REMARK 1 REFERENCE 4 REMARK 1 AUTH J.SLIWIAK,Z.DAUTER,M.KOWIEL,A.J.MCCOY,R.J.READ,M.JASKOLSKI REMARK 1 TITL ANS COMPLEX OF ST JOHN'S WORT PR-10 PROTEIN WITH 28 COPIES REMARK 1 TITL 2 IN THE ASYMMETRIC UNIT: A FIENDISH COMBINATION OF REMARK 1 TITL 3 PSEUDOSYMMETRY WITH TETARTOHEDRAL TWINNING. REMARK 1 REF ACTA CRYSTALLOGR. D BIOL. V. 71 829 2015 REMARK 1 REF 2 CRYSTALLOGR. REMARK 1 REFN ESSN 1399-0047 REMARK 1 PMID 25849394 REMARK 1 DOI 10.1107/S1399004715001388 REMARK 1 REFERENCE 5 REMARK 1 AUTH H.FERNANDES,A.BUJACZ,G.BUJACZ,F.JELEN,M.JASINSKI, REMARK 1 AUTH 2 P.KACHLICKI,J.OTLEWSKI,M.M.SIKORSKI,M.JASKOLSKI REMARK 1 TITL CYTOKININ-INDUCED STRUCTURAL ADAPTABILITY OF A LUPINUS REMARK 1 TITL 2 LUTEUS PR-10 PROTEIN. REMARK 1 REF FEBS J. V. 276 1596 2009 REMARK 1 REFN ISSN 1742-4658 REMARK 1 PMID 19220853 REMARK 1 DOI 10.1111/J.1742-4658.2009.06892.X REMARK 1 REFERENCE 6 REMARK 1 AUTH H.FERNANDES,O.PASTERNAK,G.BUJACZ,A.BUJACZ,M.M.SIKORSKI, REMARK 1 AUTH 2 M.JASKOLSKI REMARK 1 TITL LUPINUS LUTEUS PATHOGENESIS-RELATED PROTEIN AS A RESERVOIR REMARK 1 TITL 2 FOR CYTOKININ. REMARK 1 REF J. MOL. BIOL. V. 378 1040 2008 REMARK 1 REFN ESSN 1089-8638 REMARK 1 PMID 18406424 REMARK 1 DOI 10.1016/J.JMB.2008.03.027 REMARK 1 REFERENCE 7 REMARK 1 AUTH O.PASTERNAK,J.BIESIADKA,R.DOLOT,L.HANDSCHUH,G.BUJACZ, REMARK 1 AUTH 2 M.M.SIKORSKI,M.JASKOLSKI REMARK 1 TITL STRUCTURE OF A YELLOW LUPIN PATHOGENESIS-RELATED PR-10 REMARK 1 TITL 2 PROTEIN BELONGING TO A NOVEL SUBCLASS. REMARK 1 REF ACTA CRYSTALLOGR. D BIOL. V. 61 99 2005 REMARK 1 REF 2 CRYSTALLOGR. REMARK 1 REFN ISSN 0907-4449 REMARK 1 PMID 15608381 REMARK 1 DOI 10.1107/S0907444904028173 REMARK 1 REFERENCE 8 REMARK 1 AUTH J.BIESIADKA,G.BUJACZ,M.M.SIKORSKI,M.JASKOLSKI REMARK 1 TITL CRYSTAL STRUCTURES OF TWO HOMOLOGOUS PATHOGENESIS-RELATED REMARK 1 TITL 2 PROTEINS FROM YELLOW LUPINE. REMARK 1 REF J. MOL. BIOL. V. 319 1223 2002 REMARK 1 REFN ISSN 0022-2836 REMARK 1 PMID 12079359 REMARK 1 DOI 10.1016/S0022-2836(02)00385-6 REMARK 1 REFERENCE 9 REMARK 1 AUTH O.PASTERNAK,G.D.BUJACZ,Y.FUJIMOTO,Y.HASHIMOTO,F.JELEN, REMARK 1 AUTH 2 J.OTLEWSKI,M.M.SIKORSKI,M.JASKOLSKI REMARK 1 TITL CRYSTAL STRUCTURE OF VIGNA RADIATA CYTOKININ-SPECIFIC REMARK 1 TITL 2 BINDING PROTEIN IN COMPLEX WITH ZEATIN. REMARK 1 REF PLANT CELL V. 18 2622 2006 REMARK 1 REFN ISSN 1040-4651 REMARK 1 PMID 16998071 REMARK 1 DOI 10.1105/TPC.105.037119 REMARK 1 REFERENCE 10 REMARK 1 AUTH M.RUSZKOWSKI,K.SZPOTKOWSKI,M.SIKORSKI,M.JASKOLSKI REMARK 1 TITL THE LANDSCAPE OF CYTOKININ BINDING BY A PLANT NODULIN. REMARK 1 REF ACTA CRYSTALLOGR. D BIOL. V. 69 2365 2013 REMARK 1 REF 2 CRYSTALLOGR. REMARK 1 REFN ESSN 1399-0047 REMARK 1 PMID 24311578 REMARK 1 DOI 10.1107/S0907444913021975 REMARK 2 REMARK 2 RESOLUTION. 1.57 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.57 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 46.59 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 3 NUMBER OF REFLECTIONS : 28468 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.186 REMARK 3 R VALUE (WORKING SET) : 0.185 REMARK 3 FREE R VALUE : 0.206 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 3.600 REMARK 3 FREE R VALUE TEST SET COUNT : 1057 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1162 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 50 REMARK 3 SOLVENT ATOMS : 148 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 31.57 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 32.20 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.91000 REMARK 3 B22 (A**2) : -0.91000 REMARK 3 B33 (A**2) : 2.96000 REMARK 3 B12 (A**2) : -0.91000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.073 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.072 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.057 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 3.191 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 DISTANCE RESTRAINTS. RMS SIGMA REMARK 3 BOND LENGTH (A) : NULL ; NULL REMARK 3 ANGLE DISTANCE (A) : NULL ; NULL REMARK 3 INTRAPLANAR 1-4 DISTANCE (A) : NULL ; NULL REMARK 3 H-BOND OR METAL COORDINATION (A) : NULL ; NULL REMARK 3 REMARK 3 PLANE RESTRAINT (A) : NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINT (A**3) : NULL ; NULL REMARK 3 REMARK 3 NON-BONDED CONTACT RESTRAINTS. REMARK 3 SINGLE TORSION (A) : NULL ; NULL REMARK 3 MULTIPLE TORSION (A) : NULL ; NULL REMARK 3 H-BOND (X...Y) (A) : NULL ; NULL REMARK 3 H-BOND (X-H...Y) (A) : NULL ; NULL REMARK 3 REMARK 3 CONFORMATIONAL TORSION ANGLE RESTRAINTS. REMARK 3 SPECIFIED (DEGREES) : NULL ; NULL REMARK 3 PLANAR (DEGREES) : NULL ; NULL REMARK 3 STAGGERED (DEGREES) : NULL ; NULL REMARK 3 TRANSVERSE (DEGREES) : NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES : WITH TLS ADDED REMARK 4 REMARK 4 5MXW COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 25-JAN-17. REMARK 100 THE DEPOSITION ID IS D_1200003199. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 15-DEC-12 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.3 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : MAX II REMARK 200 BEAMLINE : I911-2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0000000 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 225 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 29524 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.570 REMARK 200 RESOLUTION RANGE LOW (A) : 46.590 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 200 DATA REDUNDANCY : 4.984 REMARK 200 R MERGE (I) : 0.03700 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 22.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.57 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.66 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.4 REMARK 200 DATA REDUNDANCY IN SHELL : 4.89 REMARK 200 R MERGE FOR SHELL (I) : 0.74400 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.010 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 2QIM REMARK 200 REMARK 200 REMARK: PRISM REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 62.05 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.24 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1.4 M SODIUM CITRATE PH 6.3, VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 292K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 65 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+1/6 REMARK 290 6555 X-Y,X,Z+5/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 44.87333 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 22.43667 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 33.65500 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 11.21833 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 56.09167 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3630 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 8110 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -12.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 PRO A 91 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ASP A 92 CG OD1 OD2 REMARK 470 ASP A 155 CG OD1 OD2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O UNL A 212 O UNL A 213 1.93 REMARK 500 O UNL A 207 O UNL A 209 1.94 REMARK 500 O UNL A 209 O UNL A 210 2.04 REMARK 500 O UNL A 213 O UNL A 214 2.04 REMARK 500 O UNL A 201 O UNL A 204 2.06 REMARK 500 O UNL A 202 O UNL A 204 2.08 REMARK 500 O UNL A 210 O UNL A 211 2.08 REMARK 500 O UNL A 214 O UNL A 215 2.10 REMARK 500 O UNL A 205 O UNL A 207 2.11 REMARK 500 O UNL A 208 O UNL A 216 2.14 REMARK 500 O UNL A 203 O UNL A 204 2.15 REMARK 500 OH TYR A 9 O HOH A 301 2.15 REMARK 500 O HOH A 333 O HOH A 358 2.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 VAL A 23 -67.40 -126.61 REMARK 500 HIS A 153 46.97 -152.35 REMARK 500 ASP A 155 52.96 -105.34 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 ALA A 107 ASN A 108 -34.14 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 217 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 PRO A 31 O REMARK 620 2 VAL A 34 O 101.6 REMARK 620 3 ILE A 37 O 101.6 87.0 REMARK 620 4 HOH A 317 O 155.8 102.1 84.3 REMARK 620 5 HOH A 324 O 77.9 85.0 171.7 99.5 REMARK 620 N 1 2 3 4 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NA A 217 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ML1 A 218 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZEA A 219 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5MXB RELATED DB: PDB REMARK 900 RELATED ID: 5C9Y RELATED DB: PDB REMARK 900 RELATED ID: 4RYV RELATED DB: PDB REMARK 900 RELATED ID: 4Y31 RELATED DB: PDB REMARK 900 RELATED ID: 4N3E RELATED DB: PDB REMARK 900 RELATED ID: 4PSB RELATED DB: PDB REMARK 900 RELATED ID: 4Q0K RELATED DB: PDB REMARK 900 RELATED ID: 4JHH RELATED DB: PDB REMARK 900 RELATED ID: 4JHI RELATED DB: PDB REMARK 900 RELATED ID: 4JHG RELATED DB: PDB REMARK 900 RELATED ID: 4GY9 RELATED DB: PDB REMARK 900 RELATED ID: 3IE5 RELATED DB: PDB REMARK 900 RELATED ID: 3E85 RELATED DB: PDB REMARK 900 RELATED ID: 2QIM RELATED DB: PDB REMARK 900 RELATED ID: 2FLH RELATED DB: PDB REMARK 900 RELATED ID: 1XDF RELATED DB: PDB REMARK 900 RELATED ID: 1ICX RELATED DB: PDB REMARK 900 RELATED ID: 1IFV RELATED DB: PDB DBREF 5MXW A 1 156 UNP Q9LLQ2 Q9LLQ2_LUPLU 2 157 SEQRES 1 A 156 GLY VAL PHE THR PHE GLN ASP GLU TYR THR SER THR ILE SEQRES 2 A 156 ALA PRO ALA LYS LEU TYR LYS ALA LEU VAL THR ASP ALA SEQRES 3 A 156 ASP ILE ILE ILE PRO LYS ALA VAL GLU THR ILE GLN SER SEQRES 4 A 156 VAL GLU ILE VAL GLU GLY ASN GLY GLY PRO GLY THR ILE SEQRES 5 A 156 LYS LYS LEU THR PHE ILE GLU GLY GLY GLU SER LYS TYR SEQRES 6 A 156 VAL LEU HIS LYS ILE GLU ALA ILE ASP GLU ALA ASN LEU SEQRES 7 A 156 GLY TYR ASN TYR SER ILE VAL GLY GLY VAL GLY LEU PRO SEQRES 8 A 156 ASP THR ILE GLU LYS ILE SER PHE GLU THR LYS LEU VAL SEQRES 9 A 156 GLU GLY ALA ASN GLY GLY SER ILE GLY LYS VAL THR ILE SEQRES 10 A 156 LYS ILE GLU THR LYS GLY ASP ALA GLN PRO ASN GLU GLU SEQRES 11 A 156 GLU GLY LYS ALA ALA LYS ALA ARG GLY ASP ALA PHE PHE SEQRES 12 A 156 LYS ALA ILE GLU SER TYR LEU SER ALA HIS PRO ASP TYR HET UNL A 201 1 HET UNL A 202 1 HET UNL A 203 1 HET UNL A 204 1 HET UNL A 205 1 HET UNL A 206 1 HET UNL A 207 1 HET UNL A 208 1 HET UNL A 209 1 HET UNL A 210 1 HET UNL A 211 1 HET UNL A 212 1 HET UNL A 213 1 HET UNL A 214 1 HET UNL A 215 1 HET UNL A 216 1 HET NA A 217 1 HET ML1 A 218 17 HET ZEA A 219 16 HETNAM UNL UNKNOWN LIGAND HETNAM NA SODIUM ION HETNAM ML1 N-[2-(5-METHOXY-1H-INDOL-3-YL)ETHYL]ACETAMIDE HETNAM ZEA (2E)-2-METHYL-4-(9H-PURIN-6-YLAMINO)BUT-2-EN-1-OL HETSYN ML1 MELATONIN HETSYN ZEA TRANS-ZEATIN FORMUL 18 NA NA 1+ FORMUL 19 ML1 C13 H16 N2 O2 FORMUL 20 ZEA C10 H13 N5 O FORMUL 21 HOH *148(H2 O) HELIX 1 AA1 ALA A 14 VAL A 23 1 10 HELIX 2 AA2 ASP A 25 VAL A 34 1 10 HELIX 3 AA3 ASN A 128 ALA A 152 1 25 SHEET 1 AA1 7 VAL A 2 SER A 11 0 SHEET 2 AA1 7 SER A 111 THR A 121 -1 O ILE A 117 N PHE A 5 SHEET 3 AA1 7 ILE A 94 GLU A 105 -1 N LYS A 102 O LYS A 114 SHEET 4 AA1 7 GLY A 79 GLY A 87 -1 N TYR A 82 O PHE A 99 SHEET 5 AA1 7 GLU A 62 ASP A 74 -1 N ALA A 72 O ASN A 81 SHEET 6 AA1 7 ILE A 52 GLU A 59 -1 N LYS A 53 O HIS A 68 SHEET 7 AA1 7 ILE A 37 GLU A 44 -1 N VAL A 43 O ILE A 52 LINK O PRO A 31 NA NA A 217 1555 1555 2.24 LINK O VAL A 34 NA NA A 217 1555 1555 2.36 LINK O ILE A 37 NA NA A 217 1555 1555 2.30 LINK NA NA A 217 O HOH A 317 1555 1555 2.91 LINK NA NA A 217 O HOH A 324 1555 1555 2.49 SITE 1 AC1 5 PRO A 31 VAL A 34 ILE A 37 HOH A 317 SITE 2 AC1 5 HOH A 324 SITE 1 AC2 8 TYR A 9 TYR A 82 THR A 101 VAL A 115 SITE 2 AC2 8 GLY A 139 ZEA A 219 HOH A 352 HOH A 389 SITE 1 AC3 9 PHE A 57 GLU A 59 ARG A 138 PHE A 142 SITE 2 AC3 9 ML1 A 218 HOH A 304 HOH A 332 HOH A 338 SITE 3 AC3 9 HOH A 360 CRYST1 74.400 74.400 67.310 90.00 90.00 120.00 P 65 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013442 0.007761 0.000000 0.00000 SCALE2 0.000000 0.015521 0.000000 0.00000 SCALE3 0.000000 0.000000 0.014858 0.00000