HEADER SPLICING 25-JAN-17 5MXX TITLE CRYSTAL STRUCTURE OF HUMAN SR PROTEIN KINASE 1 (SRPK1) IN COMPLEX WITH TITLE 2 COMPOUND 1 COMPND MOL_ID: 1; COMPND 2 MOLECULE: SRPK1; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PNIC28-BSA4 KEYWDS SPLICING, PHOSPHORYLATION, STRUCTURAL GENOMICS, STRUCTURAL GENOMICS KEYWDS 2 CONSORTIUM, SGC EXPDTA X-RAY DIFFRACTION AUTHOR C.TALLANT,C.REDONDO,J.BATSON,H.D.TOOP,R.BABAEBI-JADIDIB,P.SAVITSKY, AUTHOR 2 J.M.ELKINS,J.A.NEWMAN,N.BURGESS-BROWN,F.VON DELFT,C.H.ARROWSMITH, AUTHOR 3 A.M.EDWARDS,C.BOUNTRA,D.O.BATES,J.C.MORRIS,S.KNAPP,STRUCTURAL AUTHOR 4 GENOMICS CONSORTIUM (SGC) REVDAT 2 17-JAN-24 5MXX 1 LINK REVDAT 1 24-MAY-17 5MXX 0 JRNL AUTH J.BATSON,H.D.TOOP,C.REDONDO,R.BABAEI-JADIDI,A.CHAIKUAD, JRNL AUTH 2 S.F.WEARMOUTH,B.GIBBONS,C.ALLEN,C.TALLANT,J.ZHANG,C.DU, JRNL AUTH 3 J.C.HANCOX,T.HAWTREY,J.DA ROCHA,R.GRIFFITH,S.KNAPP, JRNL AUTH 4 D.O.BATES,J.C.MORRIS JRNL TITL DEVELOPMENT OF POTENT, SELECTIVE SRPK1 INHIBITORS AS JRNL TITL 2 POTENTIAL TOPICAL THERAPEUTICS FOR NEOVASCULAR EYE DISEASE. JRNL REF ACS CHEM. BIOL. V. 12 825 2017 JRNL REFN ESSN 1554-8937 JRNL PMID 28135068 JRNL DOI 10.1021/ACSCHEMBIO.6B01048 REMARK 2 REMARK 2 RESOLUTION. 1.75 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0107 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.75 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 29.29 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 45207 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.175 REMARK 3 R VALUE (WORKING SET) : 0.173 REMARK 3 FREE R VALUE : 0.205 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.900 REMARK 3 FREE R VALUE TEST SET COUNT : 2354 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.75 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.79 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3182 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 97.20 REMARK 3 BIN R VALUE (WORKING SET) : 0.2430 REMARK 3 BIN FREE R VALUE SET COUNT : 184 REMARK 3 BIN FREE R VALUE : 0.3050 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2932 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 86 REMARK 3 SOLVENT ATOMS : 216 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 21.50 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 29.59 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.18000 REMARK 3 B22 (A**2) : -0.18000 REMARK 3 B33 (A**2) : 0.36000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.098 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.098 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.062 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 1.912 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.964 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.951 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3082 ; 0.012 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 2995 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4153 ; 1.546 ; 1.957 REMARK 3 BOND ANGLES OTHERS (DEGREES): 6897 ; 0.951 ; 2.988 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 361 ; 5.976 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 140 ;31.311 ;24.357 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 542 ;12.691 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 14 ;16.440 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 450 ; 0.099 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3372 ; 0.008 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 697 ; 0.002 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1445 ; 1.913 ; 2.659 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1445 ; 1.909 ; 2.657 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1805 ; 2.784 ; 3.969 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 1803 ; 2.787 ; 3.970 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1635 ; 2.927 ; 3.105 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 1635 ; 2.927 ; 3.105 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 2348 ; 4.665 ; 4.482 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 3665 ; 6.357 ;22.479 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 3584 ; 6.263 ;22.271 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 5MXX COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 25-JAN-17. REMARK 100 THE DEPOSITION ID IS D_1200003198. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 12-APR-14 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I03 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9795 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 47639 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.750 REMARK 200 RESOLUTION RANGE LOW (A) : 29.290 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 14.20 REMARK 200 R MERGE (I) : 0.05900 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 28.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.75 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.78 REMARK 200 COMPLETENESS FOR SHELL (%) : 96.0 REMARK 200 DATA REDUNDANCY IN SHELL : 13.80 REMARK 200 R MERGE FOR SHELL (I) : 0.82600 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.700 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 1WAK, 1WBP REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 51.11 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.51 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M TRIS PH 7.5, 0.1 M CACL2, 20% REMARK 280 PEG6K, 11% ETHYLENE GLYCOL, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 277.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 43 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+3/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+1/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+3/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+1/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 66.91850 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 41.28600 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 41.28600 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 100.37775 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 41.28600 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 41.28600 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 33.45925 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 41.28600 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 41.28600 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 100.37775 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 41.28600 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 41.28600 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 33.45925 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 66.91850 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2730 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 17550 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: 18.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A 40 REMARK 465 MET A 41 REMARK 465 PRO A 42 REMARK 465 GLU A 43 REMARK 465 GLN A 44 REMARK 465 GLU A 45 REMARK 465 GLU A 46 REMARK 465 GLU A 47 REMARK 465 ILE A 48 REMARK 465 LEU A 49 REMARK 465 GLY A 50 REMARK 465 SER A 51 REMARK 465 ASP A 52 REMARK 465 ASP A 53 REMARK 465 ASP A 54 REMARK 465 GLU A 55 REMARK 465 TRP A 455 REMARK 465 GLN A 456 REMARK 465 ARG A 457 REMARK 465 SER A 458 REMARK 465 GLY A 459 REMARK 465 ALA A 460 REMARK 465 PRO A 461 REMARK 465 PRO A 462 REMARK 465 PRO A 463 REMARK 465 SER A 464 REMARK 465 GLY A 465 REMARK 465 SER A 466 REMARK 465 ALA A 467 REMARK 465 VAL A 468 REMARK 465 SER A 469 REMARK 465 THR A 470 REMARK 465 ALA A 471 REMARK 465 PRO A 472 REMARK 465 ALA A 473 REMARK 465 THR A 474 REMARK 465 ALA A 475 REMARK 465 GLY A 476 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O2 TRS A 718 O HOH A 801 2.04 REMARK 500 O VAL A 480 O HOH A 802 2.06 REMARK 500 OE1 GLU A 552 O HOH A 803 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 1003 O HOH A 1003 8555 2.07 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG A 79 -40.30 -147.38 REMARK 500 LEU A 168 -84.40 -107.37 REMARK 500 THR A 212 -5.05 78.08 REMARK 500 ASP A 213 44.03 -146.03 REMARK 500 ASP A 497 72.09 55.98 REMARK 500 GLN A 513 126.73 76.28 REMARK 500 ASN A 529 -155.72 -153.12 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 714 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 610 OE2 REMARK 620 2 GLU A 614 O 91.2 REMARK 620 3 GLU A 614 OE1 82.7 8.6 REMARK 620 4 GLU A 614 OE2 83.5 47.6 46.0 REMARK 620 5 GLU A 617 OE1 97.9 13.7 18.9 37.8 REMARK 620 6 GLU A 617 OE2 100.5 9.3 17.8 48.7 10.9 REMARK 620 7 HOH A 977 O 105.1 24.2 29.5 34.3 10.7 18.9 REMARK 620 8 HOH A 989 O 114.7 25.7 33.5 47.1 16.9 16.9 13.0 REMARK 620 N 1 2 3 4 5 6 7 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 715 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 610 OE1 REMARK 620 2 GLU A 610 OE2 54.9 REMARK 620 3 GLU A 617 OE2 70.2 28.3 REMARK 620 4 HOH A 858 O 72.0 39.8 12.9 REMARK 620 5 HOH A 938 O 81.4 36.9 11.2 15.3 REMARK 620 6 HOH A 980 O 72.1 32.5 4.2 9.1 9.7 REMARK 620 7 HOH A 992 O 78.4 43.6 15.4 6.4 12.7 11.2 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 716 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 610 OE2 REMARK 620 2 GLU A 614 OE1 82.5 REMARK 620 3 GLU A 614 OE2 84.4 55.4 REMARK 620 4 GLU A 614 O 100.1 17.8 55.7 REMARK 620 5 GLU A 617 OE1 108.8 30.2 47.1 15.1 REMARK 620 6 GLU A 617 OE2 110.6 28.3 58.3 10.6 11.5 REMARK 620 7 HOH A 977 O 161.3 102.9 84.1 85.4 73.2 75.2 REMARK 620 8 HOH A 989 O 78.4 133.2 80.3 135.7 123.9 135.3 85.2 REMARK 620 N 1 2 3 4 5 6 7 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 717 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 610 OE1 REMARK 620 2 GLU A 610 OE2 48.9 REMARK 620 3 GLU A 617 OE2 58.5 25.1 REMARK 620 4 HOH A 858 O 90.9 78.5 53.5 REMARK 620 5 HOH A 938 O 74.4 78.1 103.2 156.6 REMARK 620 6 HOH A 980 O 150.7 132.1 138.4 118.4 77.6 REMARK 620 7 HOH A 992 O 84.8 131.8 124.5 91.5 104.9 94.2 REMARK 620 N 1 2 3 4 5 6 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue W4A A 701 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 702 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 703 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 704 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 705 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 706 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 707 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 708 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 709 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 710 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 711 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 712 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 713 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CA A 714 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CA A 715 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CA A 716 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CA A 717 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue TRS A 718 DBREF 5MXX A 40 655 PDB 5MXX 5MXX 40 655 SEQRES 1 A 399 SER MET PRO GLU GLN GLU GLU GLU ILE LEU GLY SER ASP SEQRES 2 A 399 ASP ASP GLU GLN GLU ASP PRO ASN ASP TYR CYS LYS GLY SEQRES 3 A 399 GLY TYR HIS LEU VAL LYS ILE GLY ASP LEU PHE ASN GLY SEQRES 4 A 399 ARG TYR HIS VAL ILE ARG LYS LEU GLY TRP GLY HIS PHE SEQRES 5 A 399 SER THR VAL TRP LEU SER TRP ASP ILE GLN GLY LYS LYS SEQRES 6 A 399 PHE VAL ALA MET LYS VAL VAL LYS SER ALA GLU HIS TYR SEQRES 7 A 399 THR GLU THR ALA LEU ASP GLU ILE ARG LEU LEU LYS SER SEQRES 8 A 399 VAL ARG ASN SER ASP PRO ASN ASP PRO ASN ARG GLU MET SEQRES 9 A 399 VAL VAL GLN LEU LEU ASP ASP PHE LYS ILE SER GLY VAL SEQRES 10 A 399 ASN GLY THR HIS ILE CYS MET VAL PHE GLU VAL LEU GLY SEQRES 11 A 399 HIS HIS LEU LEU LYS TRP ILE ILE LYS SER ASN TYR GLN SEQRES 12 A 399 GLY LEU PRO LEU PRO CYS VAL LYS LYS ILE ILE GLN GLN SEQRES 13 A 399 VAL LEU GLN GLY LEU ASP TYR LEU HIS THR LYS CYS ARG SEQRES 14 A 399 ILE THR HIS THR ASP ILE LYS PRO GLU ASN ILE LEU LEU SEQRES 15 A 399 SER VAL ASN GLU GLN TYR ILE ARG ARG LEU ALA ALA GLU SEQRES 16 A 399 ALA THR GLU TRP GLN ARG SER GLY ALA PRO PRO PRO SER SEQRES 17 A 399 GLY SER ALA VAL SER THR ALA PRO ALA THR ALA GLY ASN SEQRES 18 A 399 PHE LEU VAL ASN PRO LEU GLU PRO LYS ASN ALA GLU LYS SEQRES 19 A 399 LEU LYS VAL LYS ILE ALA ASP LEU GLY ASN ALA CYS TRP SEQRES 20 A 399 VAL HIS LYS HIS PHE THR GLU ASP ILE GLN THR ARG GLN SEQRES 21 A 399 TYR ARG SER LEU GLU VAL LEU ILE GLY SER GLY TYR ASN SEQRES 22 A 399 THR PRO ALA ASP ILE TRP SER THR ALA CYS MET ALA PHE SEQRES 23 A 399 GLU LEU ALA THR GLY ASP TYR LEU PHE GLU PRO HIS SER SEQRES 24 A 399 GLY GLU GLU TYR THR ARG ASP GLU ASP HIS ILE ALA LEU SEQRES 25 A 399 ILE ILE GLU LEU LEU GLY LYS VAL PRO ARG LYS LEU ILE SEQRES 26 A 399 VAL ALA GLY LYS TYR SER LYS GLU PHE PHE THR LYS LYS SEQRES 27 A 399 GLY ASP LEU LYS HIS ILE THR LYS LEU LYS PRO TRP GLY SEQRES 28 A 399 LEU PHE GLU VAL LEU VAL GLU LYS TYR GLU TRP SER GLN SEQRES 29 A 399 GLU GLU ALA ALA GLY PHE THR ASP PHE LEU LEU PRO MET SEQRES 30 A 399 LEU GLU LEU ILE PRO GLU LYS ARG ALA THR ALA ALA GLU SEQRES 31 A 399 CYS LEU ARG HIS PRO TRP LEU ASN SER HET W4A A 701 26 HET EDO A 702 4 HET EDO A 703 4 HET EDO A 704 4 HET EDO A 705 4 HET EDO A 706 4 HET EDO A 707 4 HET EDO A 708 4 HET EDO A 709 4 HET EDO A 710 4 HET EDO A 711 4 HET EDO A 712 4 HET EDO A 713 4 HET CA A 714 1 HET CA A 715 1 HET CA A 716 1 HET CA A 717 1 HET TRS A 718 8 HETNAM W4A 5-METHYL-~{N}-[2-(4-METHYLPIPERAZIN-1-YL)-5- HETNAM 2 W4A (TRIFLUOROMETHYL)PHENYL]FURAN-2-CARBOXAMIDE HETNAM EDO 1,2-ETHANEDIOL HETNAM CA CALCIUM ION HETNAM TRS 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL HETSYN EDO ETHYLENE GLYCOL HETSYN TRS TRIS BUFFER FORMUL 2 W4A C18 H20 F3 N3 O2 FORMUL 3 EDO 12(C2 H6 O2) FORMUL 15 CA 4(CA 2+) FORMUL 19 TRS C4 H12 N O3 1+ FORMUL 20 HOH *216(H2 O) HELIX 1 AA1 ASP A 58 TYR A 62 5 5 HELIX 2 AA2 ALA A 114 SER A 134 1 21 HELIX 3 AA3 ASP A 138 VAL A 144 5 7 HELIX 4 AA4 HIS A 171 SER A 179 1 9 HELIX 5 AA5 PRO A 185 LYS A 206 1 22 HELIX 6 AA6 LYS A 215 GLU A 217 5 3 HELIX 7 AA7 ASN A 224 GLU A 237 1 14 HELIX 8 AA8 GLU A 484 LEU A 491 5 8 HELIX 9 AA9 ASP A 497 ALA A 501 5 5 HELIX 10 AB1 THR A 514 ARG A 518 5 5 HELIX 11 AB2 SER A 519 ILE A 524 1 6 HELIX 12 AB3 THR A 530 GLY A 547 1 18 HELIX 13 AB4 THR A 560 GLY A 574 1 15 HELIX 14 AB5 PRO A 577 GLY A 584 1 8 HELIX 15 AB6 TYR A 586 PHE A 591 1 6 HELIX 16 AB7 GLY A 607 LYS A 615 1 9 HELIX 17 AB8 SER A 619 LEU A 631 1 13 HELIX 18 AB9 PRO A 632 GLU A 635 5 4 HELIX 19 AC1 ILE A 637 ARG A 641 5 5 HELIX 20 AC2 THR A 643 ARG A 649 1 7 HELIX 21 AC3 HIS A 650 SER A 655 5 6 SHEET 1 AA1 6 LEU A 75 PHE A 76 0 SHEET 2 AA1 6 TYR A 80 TRP A 88 -1 O TYR A 80 N PHE A 76 SHEET 3 AA1 6 SER A 92 ASP A 99 -1 O VAL A 94 N LEU A 86 SHEET 4 AA1 6 LYS A 104 VAL A 111 -1 O MET A 108 N TRP A 95 SHEET 5 AA1 6 GLY A 158 GLU A 166 -1 O MET A 163 N LYS A 109 SHEET 6 AA1 6 LEU A 147 GLY A 155 -1 N LEU A 148 O VAL A 164 SHEET 1 AA2 2 ILE A 219 LEU A 221 0 SHEET 2 AA2 2 VAL A 493 ILE A 495 -1 O LYS A 494 N LEU A 220 LINK OE2 GLU A 610 CA CA A 714 1555 8555 2.12 LINK OE1 GLU A 610 CA CA A 715 1555 8555 2.48 LINK OE2 GLU A 610 CA CA A 715 1555 8555 2.25 LINK OE2 GLU A 610 CA CA A 716 1555 1555 2.58 LINK OE1 GLU A 610 CA CA A 717 1555 1555 2.50 LINK OE2 GLU A 610 CA CA A 717 1555 1555 2.75 LINK O GLU A 614 CA CA A 714 1555 1555 2.45 LINK OE1 GLU A 614 CA CA A 714 1555 8555 2.67 LINK OE2 GLU A 614 CA CA A 714 1555 8555 2.77 LINK OE1 GLU A 614 CA CA A 716 1555 1555 2.25 LINK OE2 GLU A 614 CA CA A 716 1555 1555 2.31 LINK O GLU A 614 CA CA A 716 1555 8555 2.40 LINK OE1 GLU A 617 CA CA A 714 1555 1555 2.49 LINK OE2 GLU A 617 CA CA A 714 1555 1555 2.20 LINK OE2 GLU A 617 CA CA A 715 1555 1555 2.13 LINK OE1 GLU A 617 CA CA A 716 1555 8555 2.72 LINK OE2 GLU A 617 CA CA A 716 1555 8555 2.84 LINK OE2 GLU A 617 CA CA A 717 1555 8555 2.63 LINK CA CA A 714 O HOH A 977 1555 8555 2.75 LINK CA CA A 714 O HOH A 989 1555 8555 2.37 LINK CA CA A 715 O HOH A 858 1555 1555 2.32 LINK CA CA A 715 O HOH A 938 1555 3544 2.36 LINK CA CA A 715 O HOH A 980 1555 1555 2.43 LINK CA CA A 715 O HOH A 992 1555 8555 2.79 LINK CA CA A 716 O HOH A 977 1555 1555 2.19 LINK CA CA A 716 O HOH A 989 1555 1555 2.51 LINK CA CA A 717 O HOH A 858 1555 8555 2.41 LINK CA CA A 717 O HOH A 938 1555 5545 2.32 LINK CA CA A 717 O HOH A 980 1555 8555 2.19 LINK CA CA A 717 O HOH A 992 1555 1555 2.20 SITE 1 AC1 12 LEU A 86 PHE A 165 GLU A 166 VAL A 167 SITE 2 AC1 12 LEU A 168 GLY A 169 HIS A 170 LEU A 220 SITE 3 AC1 12 VAL A 223 TYR A 227 LEU A 231 HOH A 883 SITE 1 AC2 5 LYS A 615 HOH A 832 HOH A 836 HOH A 853 SITE 2 AC2 5 HOH A 947 SITE 1 AC3 7 ASP A 138 ASN A 140 ASP A 201 TYR A 202 SITE 2 AC3 7 LYS A 206 HOH A 877 HOH A 955 SITE 1 AC4 3 THR A 205 HOH A 864 HOH A 941 SITE 1 AC5 5 LEU A 122 ASP A 150 PHE A 151 LYS A 152 SITE 2 AC5 5 ILE A 161 SITE 1 AC6 2 ASN A 500 HOH A 838 SITE 1 AC7 6 LEU A 186 TRP A 618 GLU A 622 EDO A 708 SITE 2 AC7 6 HOH A 833 HOH A 944 SITE 1 AC8 2 GLN A 182 EDO A 707 SITE 1 AC9 5 ILE A 176 GLU A 543 GLY A 547 TYR A 549 SITE 2 AC9 5 LYS A 602 SITE 1 AD1 3 GLU A 610 GLU A 614 HOH A 808 SITE 1 AD2 6 GLU A 124 VAL A 145 PHE A 165 ALA A 496 SITE 2 AD2 6 ASP A 497 LEU A 498 SITE 1 AD3 5 SER A 130 SER A 134 ALA A 624 HOH A 815 SITE 2 AD3 5 HOH A 963 SITE 1 AD4 4 TYR A 549 LYS A 615 TYR A 616 HOH A 888 SITE 1 AD5 6 GLU A 610 GLU A 614 GLU A 617 CA A 715 SITE 2 AD5 6 HOH A 977 HOH A 989 SITE 1 AD6 7 GLU A 610 GLU A 617 CA A 714 HOH A 858 SITE 2 AD6 7 HOH A 938 HOH A 980 HOH A 992 SITE 1 AD7 5 GLU A 610 GLU A 614 GLU A 617 HOH A 977 SITE 2 AD7 5 HOH A 989 SITE 1 AD8 6 GLU A 610 GLU A 617 HOH A 858 HOH A 938 SITE 2 AD8 6 HOH A 980 HOH A 992 SITE 1 AD9 8 GLU A 552 HIS A 554 ASP A 564 HOH A 801 SITE 2 AD9 8 HOH A 810 HOH A 839 HOH A 841 HOH A 951 CRYST1 82.572 82.572 133.837 90.00 90.00 90.00 P 43 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012111 0.000000 0.000000 0.00000 SCALE2 0.000000 0.012111 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007472 0.00000