HEADER TRANSPORT PROTEIN 25-JAN-17 5MY5 TITLE TUNGSTATE BINDING PROTEIN - TUPA - FROM DESULFOVIBRIO ALASKENSIS G20 COMPND MOL_ID: 1; COMPND 2 MOLECULE: ABC TRANSPORTER PERIPLASMIC SUBSTRATE-BINDING PROTEIN; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: DESULFOVIBRIO ALASKENSIS (STRAIN G20); SOURCE 3 ORGANISM_TAXID: 207559; SOURCE 4 GENE: DDE_0234; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008 KEYWDS SUSBTRATE BINDING PROTEIN, TUPA, TUNGSTATE, DESULFOVIBRIO ALASKENSIS KEYWDS 2 G20, ABC TRANSPORTER, TUNGSTEN DETECTION, SULPHATE REDUCING KEYWDS 3 BACTERIA, TRANSPORT PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR A.R.OTRELO-CARDOSO,M.A.S.C.CORREIA,T.SANTOS-SILVA REVDAT 2 17-JAN-24 5MY5 1 LINK REVDAT 1 02-AUG-17 5MY5 0 JRNL AUTH A.R.OTRELO-CARDOSO,R.R.NAIR,M.A.S.CORREIA,R.S.C.CORDEIRO, JRNL AUTH 2 A.PANJKOVICH,D.I.SVERGUN,T.SANTOS-SILVA,M.G.RIVAS JRNL TITL HIGHLY SELECTIVE TUNGSTATE TRANSPORTER PROTEIN TUPA FROM JRNL TITL 2 DESULFOVIBRIO ALASKENSIS G20. JRNL REF SCI REP V. 7 5798 2017 JRNL REFN ESSN 2045-2322 JRNL PMID 28724964 JRNL DOI 10.1038/S41598-017-06133-Y REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH A.R.OTRELO-CARDOSO,R.R.NAIR,M.A.S.CORREIA,M.G.RIVAS, REMARK 1 AUTH 2 T.SANTOS-SILVA REMARK 1 TITL TUPA: A TUNGSTATE BINDING PROTEIN IN THE PERIPLASM OF REMARK 1 TITL 2 DESULFOVIBRIO ALASKENSIS G20. REMARK 1 REF INT J MOL SCI V. 15 11783 2014 REMARK 1 REFN ESSN 1422-0067 REMARK 1 PMID 24992597 REMARK 1 DOI 10.3390/IJMS150711783 REMARK 2 REMARK 2 RESOLUTION. 1.40 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0158 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.40 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 42.53 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 98.0 REMARK 3 NUMBER OF REFLECTIONS : 44239 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.178 REMARK 3 R VALUE (WORKING SET) : 0.176 REMARK 3 FREE R VALUE : 0.217 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.900 REMARK 3 FREE R VALUE TEST SET COUNT : 2257 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.40 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.44 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3261 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 98.30 REMARK 3 BIN R VALUE (WORKING SET) : 0.2980 REMARK 3 BIN FREE R VALUE SET COUNT : 158 REMARK 3 BIN FREE R VALUE : 0.3470 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1880 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 3 REMARK 3 SOLVENT ATOMS : 332 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 23.67 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 2.50000 REMARK 3 B22 (A**2) : -0.38000 REMARK 3 B33 (A**2) : -1.87000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -1.13000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.063 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.070 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.064 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 1.722 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.975 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.959 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1933 ; 0.023 ; 0.020 REMARK 3 BOND LENGTHS OTHERS (A): 1823 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2626 ; 2.047 ; 1.966 REMARK 3 BOND ANGLES OTHERS (DEGREES): 4250 ; 1.055 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 253 ; 6.284 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 74 ;40.778 ;25.676 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 329 ;12.391 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 5 ;18.314 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 297 ; 0.133 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2157 ; 0.013 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 356 ; 0.002 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1003 ; 2.016 ; 2.101 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1002 ; 2.010 ; 2.098 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1253 ; 2.713 ; 3.145 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 1254 ; 2.717 ; 3.148 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 930 ; 3.036 ; 2.384 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 927 ; 3.006 ; 2.374 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 1370 ; 4.407 ; 3.437 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 2291 ; 5.727 ;27.326 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 2208 ; 5.615 ;26.375 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 5MY5 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 25-JAN-17. REMARK 100 THE DEPOSITION ID IS D_1200002945. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 13-APR-13 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID23-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.954 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M-F REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 46519 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.400 REMARK 200 RESOLUTION RANGE LOW (A) : 42.530 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.5 REMARK 200 DATA REDUNDANCY : 2.900 REMARK 200 R MERGE (I) : 0.03400 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 12.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.40 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.42 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.29700 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.400 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 3LR1, 3MUQ REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 39.77 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.04 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2 M MAGNESIUM CHLORIDE, 0.1 M HEPES REMARK 280 (PH 7.5) AND 30% (W/V) POLYETHYLENE GLYCOL 3350, VAPOR DIFFUSION, REMARK 280 HANGING DROP, TEMPERATURE 293.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 21.26500 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 330 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 11810 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -21.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -22 REMARK 465 ALA A -21 REMARK 465 HIS A -20 REMARK 465 HIS A -19 REMARK 465 HIS A -18 REMARK 465 HIS A -17 REMARK 465 HIS A -16 REMARK 465 HIS A -15 REMARK 465 VAL A -14 REMARK 465 ASP A -13 REMARK 465 ASP A -12 REMARK 465 ASP A -11 REMARK 465 ASP A -10 REMARK 465 LYS A -9 REMARK 465 MET A -8 REMARK 465 LEU A -7 REMARK 465 GLU A -6 REMARK 465 VAL A -5 REMARK 465 LEU A -4 REMARK 465 PHE A -3 REMARK 465 GLN A -2 REMARK 465 GLY A -1 REMARK 465 PRO A 0 REMARK 465 GLU A 1 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 453 O HOH A 688 2.09 REMARK 500 O HOH A 401 O HOH A 416 2.13 REMARK 500 O HOH A 417 O HOH A 688 2.14 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 596 O HOH A 688 2656 1.97 REMARK 500 O HOH A 638 O HOH A 700 2646 2.05 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 118 NE - CZ - NH1 ANGL. DEV. = 3.8 DEGREES REMARK 500 ASP A 170 CB - CG - OD1 ANGL. DEV. = 6.5 DEGREES REMARK 500 ASP A 194 CB - CG - OD2 ANGL. DEV. = -5.5 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 HIS A 59 58.97 -147.16 REMARK 500 ASN A 121 18.51 57.50 REMARK 500 LEU A 245 -41.41 -131.65 REMARK 500 ASN A 249 28.90 -153.07 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 301 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASN A 112 OD1 REMARK 620 2 HOH A 441 O 87.2 REMARK 620 3 HOH A 522 O 88.3 84.3 REMARK 620 4 HOH A 609 O 87.4 171.4 88.8 REMARK 620 5 HOH A 629 O 98.2 101.8 171.2 85.7 REMARK 620 6 HOH A 657 O 172.7 87.8 85.9 96.8 88.0 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NA A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL A 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL A 303 DBREF 5MY5 A 1 251 UNP Q316W1 Q316W1_DESAG 21 271 SEQADV 5MY5 MET A -22 UNP Q316W1 INITIATING METHIONINE SEQADV 5MY5 ALA A -21 UNP Q316W1 EXPRESSION TAG SEQADV 5MY5 HIS A -20 UNP Q316W1 EXPRESSION TAG SEQADV 5MY5 HIS A -19 UNP Q316W1 EXPRESSION TAG SEQADV 5MY5 HIS A -18 UNP Q316W1 EXPRESSION TAG SEQADV 5MY5 HIS A -17 UNP Q316W1 EXPRESSION TAG SEQADV 5MY5 HIS A -16 UNP Q316W1 EXPRESSION TAG SEQADV 5MY5 HIS A -15 UNP Q316W1 EXPRESSION TAG SEQADV 5MY5 VAL A -14 UNP Q316W1 EXPRESSION TAG SEQADV 5MY5 ASP A -13 UNP Q316W1 EXPRESSION TAG SEQADV 5MY5 ASP A -12 UNP Q316W1 EXPRESSION TAG SEQADV 5MY5 ASP A -11 UNP Q316W1 EXPRESSION TAG SEQADV 5MY5 ASP A -10 UNP Q316W1 EXPRESSION TAG SEQADV 5MY5 LYS A -9 UNP Q316W1 EXPRESSION TAG SEQADV 5MY5 MET A -8 UNP Q316W1 EXPRESSION TAG SEQADV 5MY5 LEU A -7 UNP Q316W1 EXPRESSION TAG SEQADV 5MY5 GLU A -6 UNP Q316W1 EXPRESSION TAG SEQADV 5MY5 VAL A -5 UNP Q316W1 EXPRESSION TAG SEQADV 5MY5 LEU A -4 UNP Q316W1 EXPRESSION TAG SEQADV 5MY5 PHE A -3 UNP Q316W1 EXPRESSION TAG SEQADV 5MY5 GLN A -2 UNP Q316W1 EXPRESSION TAG SEQADV 5MY5 GLY A -1 UNP Q316W1 EXPRESSION TAG SEQADV 5MY5 PRO A 0 UNP Q316W1 EXPRESSION TAG SEQADV 5MY5 LYS A 107 UNP Q316W1 ARG 127 ENGINEERED MUTATION SEQADV 5MY5 PRO A 138 UNP Q316W1 SER 158 ENGINEERED MUTATION SEQRES 1 A 274 MET ALA HIS HIS HIS HIS HIS HIS VAL ASP ASP ASP ASP SEQRES 2 A 274 LYS MET LEU GLU VAL LEU PHE GLN GLY PRO GLU ALA PRO SEQRES 3 A 274 VAL LEU MET MET ALA THR THR THR SER THR ASP ASN THR SEQRES 4 A 274 GLY LEU LEU ASP ASP LEU ALA PRO GLN PHE THR LYS ASP SEQRES 5 A 274 THR GLY ILE GLU LEU ARG TRP THR ALA VAL GLY THR GLY SEQRES 6 A 274 LYS ALA LEU LYS MET GLY GLU ASN CYS ASP VAL ASP ILE SEQRES 7 A 274 LEU LEU VAL HIS ALA PRO ALA ALA GLU LYS ALA PHE VAL SEQRES 8 A 274 ASP ALA GLY PHE GLY THR ALA ARG THR GLN LEU MET TYR SEQRES 9 A 274 ASN ASP PHE VAL ILE ILE GLY PRO ALA ALA ASP PRO ALA SEQRES 10 A 274 GLY VAL LYS GLY MET THR VAL ALA ALA ALA LEU GLY LYS SEQRES 11 A 274 ILE ALA ALA ASP ASN ALA VAL PHE VAL SER ARG GLY ASP SEQRES 12 A 274 ASN SER GLY THR HIS LYS MET GLU LYS SER LEU TRP LYS SEQRES 13 A 274 GLN ILE GLU GLY PRO SER PRO GLU LYS GLU ALA TRP TYR SEQRES 14 A 274 VAL GLN THR GLY GLN GLY MET LEU ARG THR ILE ASN VAL SEQRES 15 A 274 ALA ALA GLU LYS GLY GLY TYR THR MET THR ASP ARG GLY SEQRES 16 A 274 THR TYR ILE LYS TYR GLU ALA SER MET ASP GLY ASN PRO SEQRES 17 A 274 PRO LEU LYS ILE LEU VAL GLU GLY ASP LYS ILE LEU PHE SEQRES 18 A 274 ASN GLN TYR SER ALA ILE PRO VAL ASN PRO ALA HIS CYS SEQRES 19 A 274 PRO LYS VAL LYS LYS ASP LEU ALA ASP LYS PHE VAL ASN SEQRES 20 A 274 TRP MET ALA SER PRO ALA THR GLN LYS THR ILE GLY ASP SEQRES 21 A 274 PHE LYS LEU MET GLY LYS ALA LEU PHE THR PRO ASN ALA SEQRES 22 A 274 GLU HET NA A 301 1 HET CL A 302 1 HET CL A 303 1 HETNAM NA SODIUM ION HETNAM CL CHLORIDE ION FORMUL 2 NA NA 1+ FORMUL 3 CL 2(CL 1-) FORMUL 5 HOH *332(H2 O) HELIX 1 AA1 THR A 11 GLY A 17 1 7 HELIX 2 AA2 GLY A 17 GLY A 31 1 15 HELIX 3 AA3 GLY A 40 ASN A 50 1 11 HELIX 4 AA4 ALA A 60 ALA A 70 1 11 HELIX 5 AA5 THR A 100 ASP A 111 1 12 HELIX 6 AA6 SER A 122 LYS A 133 1 12 HELIX 7 AA7 GLY A 152 GLY A 164 1 13 HELIX 8 AA8 ARG A 171 MET A 181 1 11 HELIX 9 AA9 ASP A 194 ILE A 196 5 3 HELIX 10 AB1 LYS A 215 SER A 228 1 14 HELIX 11 AB2 SER A 228 PHE A 238 1 11 SHEET 1 AA1 6 GLU A 33 VAL A 39 0 SHEET 2 AA1 6 VAL A 4 THR A 10 1 N LEU A 5 O GLU A 33 SHEET 3 AA1 6 ILE A 55 VAL A 58 1 O LEU A 57 N ALA A 8 SHEET 4 AA1 6 PHE A 198 PRO A 205 -1 O SER A 202 N VAL A 58 SHEET 5 AA1 6 THR A 77 PRO A 89 -1 N MET A 80 O TYR A 201 SHEET 6 AA1 6 LEU A 187 VAL A 191 -1 O LYS A 188 N GLY A 88 SHEET 1 AA2 5 TYR A 146 GLN A 148 0 SHEET 2 AA2 5 PHE A 115 SER A 117 1 N SER A 117 O VAL A 147 SHEET 3 AA2 5 TYR A 166 ASP A 170 1 O TYR A 166 N VAL A 116 SHEET 4 AA2 5 THR A 77 PRO A 89 -1 N ILE A 87 O THR A 167 SHEET 5 AA2 5 THR A 247 PRO A 248 -1 O THR A 247 N TYR A 81 SHEET 1 AA3 2 LYS A 239 LEU A 240 0 SHEET 2 AA3 2 LYS A 243 ALA A 244 -1 O LYS A 243 N LEU A 240 SSBOND 1 CYS A 51 CYS A 211 1555 1555 2.08 LINK OD1 ASN A 112 NA NA A 301 1555 1555 2.37 LINK NA NA A 301 O HOH A 441 1555 1555 2.11 LINK NA NA A 301 O HOH A 522 1555 1555 2.23 LINK NA NA A 301 O HOH A 609 1555 1555 2.11 LINK NA NA A 301 O HOH A 629 1555 1555 2.00 LINK NA NA A 301 O HOH A 657 1555 1555 2.07 SITE 1 AC1 6 ASN A 112 HOH A 441 HOH A 522 HOH A 609 SITE 2 AC1 6 HOH A 629 HOH A 657 SITE 1 AC2 3 MET A 99 THR A 100 ALA A 103 SITE 1 AC3 3 GLY A 152 MET A 153 HOH A 644 CRYST1 52.323 42.530 54.753 90.00 95.45 90.00 P 1 21 1 2 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.019112 0.000000 0.001824 0.00000 SCALE2 0.000000 0.023513 0.000000 0.00000 SCALE3 0.000000 0.000000 0.018347 0.00000