HEADER TRANSFERASE 26-JAN-17 5MYC TITLE CRYSTAL STRUCTURE OF HUMAN 14-3-3 SIGMA IN COMPLEX WITH LRRK2 PEPTIDE TITLE 2 PS910 COMPND MOL_ID: 1; COMPND 2 MOLECULE: 14-3-3 PROTEIN SIGMA; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: EPITHELIAL CELL MARKER PROTEIN 1,STRATIFIN; COMPND 5 ENGINEERED: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: LEUCINE-RICH REPEAT SERINE/THREONINE-PROTEIN KINASE 2; COMPND 8 CHAIN: P; COMPND 9 SYNONYM: DARDARIN; COMPND 10 EC: 2.7.11.1; COMPND 11 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: SFN, HME1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 MOL_ID: 2; SOURCE 9 SYNTHETIC: YES; SOURCE 10 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 11 ORGANISM_COMMON: HUMAN; SOURCE 12 ORGANISM_TAXID: 9606 KEYWDS 14-3-3 LRRK2 PHOSPHORYLATION PPI, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR L.M.STEVERS,R.M.J.M.DE VRIES,C.OTTMANN REVDAT 3 17-JAN-24 5MYC 1 LINK ATOM REVDAT 2 05-APR-17 5MYC 1 JRNL REVDAT 1 01-MAR-17 5MYC 0 JRNL AUTH L.M.STEVERS,R.M.DE VRIES,R.G.DOVESTON,L.G.MILROY, JRNL AUTH 2 L.BRUNSVELD,C.OTTMANN JRNL TITL STRUCTURAL INTERFACE BETWEEN LRRK2 AND 14-3-3 PROTEIN. JRNL REF BIOCHEM. J. V. 474 1273 2017 JRNL REFN ESSN 1470-8728 JRNL PMID 28202711 JRNL DOI 10.1042/BCJ20161078 REMARK 2 REMARK 2 RESOLUTION. 1.46 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.11_2567: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.46 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 41.85 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 3 NUMBER OF REFLECTIONS : 97760 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.167 REMARK 3 R VALUE (WORKING SET) : 0.166 REMARK 3 FREE R VALUE : 0.189 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.010 REMARK 3 FREE R VALUE TEST SET COUNT : 4897 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 41.8656 - 4.5325 1.00 3113 163 0.1682 0.1793 REMARK 3 2 4.5325 - 3.5982 1.00 3105 161 0.1324 0.1631 REMARK 3 3 3.5982 - 3.1436 1.00 3097 164 0.1377 0.1539 REMARK 3 4 3.1436 - 2.8562 1.00 3101 163 0.1498 0.1889 REMARK 3 5 2.8562 - 2.6515 1.00 3116 164 0.1599 0.1565 REMARK 3 6 2.6515 - 2.4952 1.00 3074 166 0.1460 0.1659 REMARK 3 7 2.4952 - 2.3703 1.00 3147 164 0.1501 0.1714 REMARK 3 8 2.3703 - 2.2671 1.00 3092 166 0.1488 0.1801 REMARK 3 9 2.2671 - 2.1798 1.00 3043 163 0.1443 0.1720 REMARK 3 10 2.1798 - 2.1046 1.00 3148 165 0.1501 0.1975 REMARK 3 11 2.1046 - 2.0388 1.00 3104 166 0.1536 0.1854 REMARK 3 12 2.0388 - 1.9805 1.00 3095 162 0.1648 0.1933 REMARK 3 13 1.9805 - 1.9284 1.00 3127 167 0.1719 0.2192 REMARK 3 14 1.9284 - 1.8813 1.00 3073 159 0.1703 0.1748 REMARK 3 15 1.8813 - 1.8386 1.00 3086 158 0.1738 0.1721 REMARK 3 16 1.8386 - 1.7994 1.00 3116 167 0.1753 0.2013 REMARK 3 17 1.7994 - 1.7635 1.00 3127 165 0.1850 0.2056 REMARK 3 18 1.7635 - 1.7302 1.00 3081 163 0.1900 0.1697 REMARK 3 19 1.7302 - 1.6993 1.00 3054 161 0.1930 0.1989 REMARK 3 20 1.6993 - 1.6705 1.00 3131 164 0.1872 0.2181 REMARK 3 21 1.6705 - 1.6435 1.00 3137 163 0.2041 0.2045 REMARK 3 22 1.6435 - 1.6182 1.00 3051 163 0.2179 0.2696 REMARK 3 23 1.6182 - 1.5944 1.00 3149 166 0.2330 0.2529 REMARK 3 24 1.5944 - 1.5720 1.00 3133 163 0.2449 0.2557 REMARK 3 25 1.5720 - 1.5507 1.00 3074 161 0.2411 0.2772 REMARK 3 26 1.5507 - 1.5306 1.00 3095 167 0.2482 0.2478 REMARK 3 27 1.5306 - 1.5115 1.00 3083 161 0.2529 0.2877 REMARK 3 28 1.5115 - 1.4932 1.00 3122 167 0.2615 0.2754 REMARK 3 29 1.4932 - 1.4759 1.00 3100 165 0.2682 0.3382 REMARK 3 30 1.4759 - 1.4593 0.93 2889 150 0.3014 0.3383 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.170 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 18.550 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.006 2120 REMARK 3 ANGLE : 0.750 2882 REMARK 3 CHIRALITY : 0.060 314 REMARK 3 PLANARITY : 0.004 377 REMARK 3 DIHEDRAL : 19.178 853 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5MYC COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 26-JAN-17. REMARK 100 THE DEPOSITION ID IS D_1200003241. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 26-FEB-16 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.3 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SLS REMARK 200 BEAMLINE : X06SA REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.978620 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : PSI PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 116840 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.088 REMARK 200 RESOLUTION RANGE LOW (A) : 45.618 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 200 DATA REDUNDANCY : 4.600 REMARK 200 R MERGE (I) : 0.12400 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 14.9900 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.46 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.54 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.7 REMARK 200 DATA REDUNDANCY IN SHELL : 11.80 REMARK 200 R MERGE FOR SHELL (I) : 1.08600 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.200 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: 5BTV REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 47.54 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.34 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: HEPES, NACL2, PEG400, GLYCEROL, PH REMARK 280 7.3, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 31.34450 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 31.34450 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 41.25850 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 56.20550 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 41.25850 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 56.20550 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 31.34450 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 41.25850 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 56.20550 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 31.34450 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 41.25850 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 56.20550 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 6510 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 23450 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -86.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, P REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 224.82200 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 125.37800 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 CA CA A 301 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 VAL P 367 REMARK 465 LYS P 368 REMARK 465 LYS P 369 REMARK 465 ASP P 382 REMARK 465 ALA P 383 REMARK 465 VAL P 384 REMARK 465 LEU P 385 REMARK 465 GLN P 386 REMARK 465 ARG P 387 REMARK 465 CYS P 388 REMARK 465 SER P 389 REMARK 465 PRO P 390 REMARK 465 ASN P 391 REMARK 465 LEU P 392 REMARK 465 GLN P 393 REMARK 465 ARG P 394 REMARK 465 HIS P 395 REMARK 465 SER P 396 REMARK 465 ASN P 397 REMARK 465 SEP P 398 REMARK 465 LEU P 399 REMARK 465 GLY P 400 REMARK 465 PRO P 401 REMARK 465 ILE P 402 REMARK 465 PHE P 403 REMARK 465 ASP P 404 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 72 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 490 O HOH A 749 1.67 REMARK 500 O HOH A 495 O HOH A 583 1.81 REMARK 500 O HOH A 676 O HOH A 750 1.84 REMARK 500 O HOH A 620 O HOH A 685 1.95 REMARK 500 O HOH A 414 O HOH A 672 1.96 REMARK 500 O HOH A 607 O HOH A 655 1.98 REMARK 500 O HOH A 490 O HOH A 656 1.99 REMARK 500 O HOH A 651 O HOH A 692 2.01 REMARK 500 O HOH A 664 O HOH A 673 2.07 REMARK 500 O HOH A 526 O HOH A 736 2.07 REMARK 500 O HOH A 413 O HOH A 443 2.14 REMARK 500 O HOH A 656 O HOH A 749 2.14 REMARK 500 O HOH A 565 O HOH A 616 2.17 REMARK 500 O HOH A 646 O HOH A 662 2.17 REMARK 500 O HOH A 425 O HOH A 454 2.18 REMARK 500 O HOH A 591 O HOH A 689 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 451 O HOH A 694 4577 1.75 REMARK 500 O HOH A 683 O HOH A 751 8577 2.11 REMARK 500 O HOH A 747 O HOH A 761 2874 2.15 REMARK 500 O HOH A 698 O HOH A 727 6775 2.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG A 18 77.50 -104.45 REMARK 500 HIS A 106 40.11 -144.34 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 795 DISTANCE = 6.07 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 301 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 2 OE2 REMARK 620 2 GLU A 2 OE2 0.0 REMARK 620 3 HOH A 491 O 76.1 76.1 REMARK 620 4 HOH A 491 O 82.1 82.1 150.8 REMARK 620 5 HOH A 651 O 82.4 82.4 131.8 62.4 REMARK 620 6 HOH A 651 O 137.5 137.5 62.4 131.9 132.4 REMARK 620 7 HOH A 692 O 87.6 87.6 88.6 109.9 47.5 99.7 REMARK 620 8 HOH A 692 O 168.3 168.3 109.9 88.6 99.7 47.5 102.4 REMARK 620 N 1 2 3 4 5 6 7 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 302 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 35 OE1 REMARK 620 2 GLU A 35 OE2 50.4 REMARK 620 3 GLU A 110 O 86.5 87.8 REMARK 620 4 GLU A 188 OE2 88.5 121.7 44.7 REMARK 620 5 HOH A 436 O 85.9 122.1 48.6 4.8 REMARK 620 6 HOH A 570 O 85.7 119.5 44.6 2.9 3.9 REMARK 620 7 HOH A 665 O 84.4 120.4 47.7 5.2 1.7 3.3 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 304 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A 416 O REMARK 620 2 HOH A 453 O 116.9 REMARK 620 3 HOH A 677 O 158.8 70.5 REMARK 620 N 1 2 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CA A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CA A 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL A 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NA A 304 DBREF 5MYC A 1 231 UNP P31947 1433S_HUMAN 1 231 DBREF 5MYC P 367 404 UNP Q5S007 LRRK2_HUMAN 904 941 SEQADV 5MYC GLY A -4 UNP P31947 EXPRESSION TAG SEQADV 5MYC ALA A -3 UNP P31947 EXPRESSION TAG SEQADV 5MYC MET A -2 UNP P31947 EXPRESSION TAG SEQADV 5MYC GLY A -1 UNP P31947 EXPRESSION TAG SEQADV 5MYC SER A 0 UNP P31947 EXPRESSION TAG SEQRES 1 A 236 GLY ALA MET GLY SER MET GLU ARG ALA SER LEU ILE GLN SEQRES 2 A 236 LYS ALA LYS LEU ALA GLU GLN ALA GLU ARG TYR GLU ASP SEQRES 3 A 236 MET ALA ALA PHE MET LYS GLY ALA VAL GLU LYS GLY GLU SEQRES 4 A 236 GLU LEU SER CYS GLU GLU ARG ASN LEU LEU SER VAL ALA SEQRES 5 A 236 TYR LYS ASN VAL VAL GLY GLY GLN ARG ALA ALA TRP ARG SEQRES 6 A 236 VAL LEU SER SER ILE GLU GLN LYS SER ASN GLU GLU GLY SEQRES 7 A 236 SER GLU GLU LYS GLY PRO GLU VAL ARG GLU TYR ARG GLU SEQRES 8 A 236 LYS VAL GLU THR GLU LEU GLN GLY VAL CYS ASP THR VAL SEQRES 9 A 236 LEU GLY LEU LEU ASP SER HIS LEU ILE LYS GLU ALA GLY SEQRES 10 A 236 ASP ALA GLU SER ARG VAL PHE TYR LEU LYS MET LYS GLY SEQRES 11 A 236 ASP TYR TYR ARG TYR LEU ALA GLU VAL ALA THR GLY ASP SEQRES 12 A 236 ASP LYS LYS ARG ILE ILE ASP SER ALA ARG SER ALA TYR SEQRES 13 A 236 GLN GLU ALA MET ASP ILE SER LYS LYS GLU MET PRO PRO SEQRES 14 A 236 THR ASN PRO ILE ARG LEU GLY LEU ALA LEU ASN PHE SER SEQRES 15 A 236 VAL PHE HIS TYR GLU ILE ALA ASN SER PRO GLU GLU ALA SEQRES 16 A 236 ILE SER LEU ALA LYS THR THR PHE ASP GLU ALA MET ALA SEQRES 17 A 236 ASP LEU HIS THR LEU SER GLU ASP SER TYR LYS ASP SER SEQRES 18 A 236 THR LEU ILE MET GLN LEU LEU ARG ASP ASN LEU THR LEU SEQRES 19 A 236 TRP THR SEQRES 1 P 38 VAL LYS LYS LYS SER ASN SEP ILE SER VAL GLY GLU PHE SEQRES 2 P 38 TYR ARG ASP ALA VAL LEU GLN ARG CYS SER PRO ASN LEU SEQRES 3 P 38 GLN ARG HIS SER ASN SEP LEU GLY PRO ILE PHE ASP MODRES 5MYC SEP P 373 SER MODIFIED RESIDUE HET SEP P 373 10 HET CA A 301 1 HET CA A 302 1 HET CL A 303 1 HET NA A 304 1 HETNAM SEP PHOSPHOSERINE HETNAM CA CALCIUM ION HETNAM CL CHLORIDE ION HETNAM NA SODIUM ION HETSYN SEP PHOSPHONOSERINE FORMUL 2 SEP C3 H8 N O6 P FORMUL 3 CA 2(CA 2+) FORMUL 5 CL CL 1- FORMUL 6 NA NA 1+ FORMUL 7 HOH *413(H2 O) HELIX 1 AA1 GLU A 2 ALA A 16 1 15 HELIX 2 AA2 ARG A 18 LYS A 32 1 15 HELIX 3 AA3 SER A 37 ASN A 70 1 34 HELIX 4 AA4 PRO A 79 SER A 105 1 27 HELIX 5 AA5 HIS A 106 ALA A 111 1 6 HELIX 6 AA6 ASP A 113 ALA A 135 1 23 HELIX 7 AA7 ASP A 139 MET A 162 1 24 HELIX 8 AA8 ASN A 166 ILE A 183 1 18 HELIX 9 AA9 SER A 186 ALA A 203 1 18 HELIX 10 AB1 ASP A 204 LEU A 208 5 5 HELIX 11 AB2 SER A 209 THR A 231 1 23 HELIX 12 AB3 SER P 375 ARG P 381 1 7 LINK C ASN P 372 N SEP P 373 1555 1555 1.33 LINK C SEP P 373 N ILE P 374 1555 1555 1.33 LINK OE2 GLU A 2 CA CA A 301 1555 1555 2.42 LINK OE2 GLU A 2 CA CA A 301 1555 3856 2.42 LINK OE1 GLU A 35 CA CA A 302 1555 6774 2.69 LINK OE2 GLU A 35 CA CA A 302 1555 6774 2.43 LINK O GLU A 110 CA CA A 302 1555 6774 2.31 LINK OE2 GLU A 188 CA CA A 302 1555 1555 2.42 LINK CA CA A 301 O HOH A 491 1555 1555 2.43 LINK CA CA A 301 O HOH A 491 1555 3856 2.43 LINK CA CA A 301 O HOH A 651 1555 1555 2.32 LINK CA CA A 301 O HOH A 651 1555 3856 2.32 LINK CA CA A 301 O HOH A 692 1555 1555 2.63 LINK CA CA A 301 O HOH A 692 1555 3856 2.63 LINK CA CA A 302 O HOH A 436 1555 6775 2.42 LINK CA CA A 302 O HOH A 570 1555 1555 2.35 LINK CA CA A 302 O HOH A 665 1555 6775 2.39 LINK NA NA A 304 O HOH A 416 1555 1555 2.35 LINK NA NA A 304 O HOH A 453 1555 1555 2.90 LINK NA NA A 304 O HOH A 677 1555 1555 2.21 CISPEP 1 SER A 105 HIS A 106 0 6.09 SITE 1 AC1 4 GLU A 2 HOH A 491 HOH A 651 HOH A 692 SITE 1 AC2 6 GLU A 35 GLU A 110 GLU A 188 HOH A 436 SITE 2 AC2 6 HOH A 570 HOH A 665 SITE 1 AC3 4 LYS A 9 LYS A 87 HOH A 652 HOH A 735 SITE 1 AC4 6 LEU A 121 LYS A 124 GLU A 153 HOH A 416 SITE 2 AC4 6 HOH A 453 HOH A 677 CRYST1 82.517 112.411 62.689 90.00 90.00 90.00 C 2 2 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012119 0.000000 0.000000 0.00000 SCALE2 0.000000 0.008896 0.000000 0.00000 SCALE3 0.000000 0.000000 0.015952 0.00000