HEADER HYDROLASE 26-JAN-17 5MYI TITLE CONVERGENT EVOLUTION INVOLVING DIMERIC AND TRIMERIC DUTPASES IN TITLE 2 SIGNALLING. COMPND MOL_ID: 1; COMPND 2 MOLECULE: DUTPASE FROM DI S. AUREUS PHAGE; COMPND 3 CHAIN: D; COMPND 4 EC: 3.6.1.23; COMPND 5 ENGINEERED: YES; COMPND 6 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: STAPHYLOCOCCUS AUREUS; SOURCE 3 ORGANISM_TAXID: 1280; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 6 EXPRESSION_SYSTEM_STRAIN: BL21 KEYWDS STAPHYLOCOCCUS AUREUS, PATHOGENICITY ISLAND, SAPI, DUTPASES, KEYWDS 2 SIGNALLING, GENE TRANSFER, MOBILE GENETIC ELEMENTS, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR J.DONDERIS,J.BOWRING,E.MAIQUES,J.R.CIGES-TOMAS,C.ALITE,I.MEHMEDOV, AUTHOR 2 M.A.TORMO-MAS,J.R.PENADES,A.MARINA REVDAT 2 20-SEP-17 5MYI 1 JRNL REVDAT 1 06-SEP-17 5MYI 0 JRNL AUTH J.DONDERIS,J.BOWRING,E.MAIQUES,J.R.CIGES-TOMAS,C.ALITE, JRNL AUTH 2 I.MEHMEDOV,M.A.TORMO-MAS,J.R.PENADES,A.MARINA JRNL TITL CONVERGENT EVOLUTION INVOLVING DIMERIC AND TRIMERIC DUTPASES JRNL TITL 2 IN PATHOGENICITY ISLAND MOBILIZATION. JRNL REF PLOS PATHOG. V. 13 06581 2017 JRNL REFN ESSN 1553-7374 JRNL PMID 28892519 JRNL DOI 10.1371/JOURNAL.PPAT.1006581 REMARK 2 REMARK 2 RESOLUTION. 1.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.9_1692 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 60.37 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 19129 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.167 REMARK 3 R VALUE (WORKING SET) : 0.165 REMARK 3 FREE R VALUE : 0.209 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.140 REMARK 3 FREE R VALUE TEST SET COUNT : 984 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 60.3979 - 3.6346 1.00 2790 143 0.1527 0.1825 REMARK 3 2 3.6346 - 2.8849 1.00 2650 129 0.1624 0.2249 REMARK 3 3 2.8849 - 2.5202 1.00 2567 139 0.1700 0.1942 REMARK 3 4 2.5202 - 2.2898 1.00 2540 153 0.1637 0.2162 REMARK 3 5 2.2898 - 2.1257 1.00 2546 141 0.1621 0.2284 REMARK 3 6 2.1257 - 2.0003 1.00 2518 147 0.2022 0.2555 REMARK 3 7 2.0003 - 1.9001 1.00 2534 132 0.2252 0.2717 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.190 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 19.660 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.007 1432 REMARK 3 ANGLE : 0.924 1934 REMARK 3 CHIRALITY : 0.038 208 REMARK 3 PLANARITY : 0.005 252 REMARK 3 DIHEDRAL : 13.799 532 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 13 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'D' AND (RESID 1 THROUGH 6 ) REMARK 3 ORIGIN FOR THE GROUP (A): 33.1286 50.2313 2.0215 REMARK 3 T TENSOR REMARK 3 T11: 0.4576 T22: 0.2907 REMARK 3 T33: 0.4771 T12: 0.0256 REMARK 3 T13: -0.1135 T23: -0.0545 REMARK 3 L TENSOR REMARK 3 L11: 0.0159 L22: 0.0194 REMARK 3 L33: 0.0125 L12: -0.0125 REMARK 3 L13: -0.0177 L23: -0.0098 REMARK 3 S TENSOR REMARK 3 S11: 0.4498 S12: 0.1105 S13: 0.3649 REMARK 3 S21: -0.4540 S22: -0.0112 S23: -0.2775 REMARK 3 S31: -0.3914 S32: -0.0515 S33: -0.0021 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'D' AND (RESID 7 THROUGH 23 ) REMARK 3 ORIGIN FOR THE GROUP (A): 41.1679 40.6919 -10.0213 REMARK 3 T TENSOR REMARK 3 T11: 0.3315 T22: 0.3623 REMARK 3 T33: 0.2949 T12: -0.0318 REMARK 3 T13: -0.0484 T23: 0.0718 REMARK 3 L TENSOR REMARK 3 L11: 0.7155 L22: 0.2363 REMARK 3 L33: 0.3712 L12: 0.0733 REMARK 3 L13: 0.0678 L23: -0.0323 REMARK 3 S TENSOR REMARK 3 S11: -0.0339 S12: 0.9372 S13: 0.6082 REMARK 3 S21: -0.0621 S22: -0.2732 S23: -0.1922 REMARK 3 S31: -0.3212 S32: 0.1144 S33: -0.0212 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'D' AND (RESID 24 THROUGH 28 ) REMARK 3 ORIGIN FOR THE GROUP (A): 47.6096 25.9912 -11.3538 REMARK 3 T TENSOR REMARK 3 T11: 0.2819 T22: 0.5767 REMARK 3 T33: 0.2326 T12: 0.1304 REMARK 3 T13: -0.0306 T23: -0.0328 REMARK 3 L TENSOR REMARK 3 L11: 0.3846 L22: 0.0270 REMARK 3 L33: 1.0094 L12: -0.0630 REMARK 3 L13: -0.4233 L23: -0.0516 REMARK 3 S TENSOR REMARK 3 S11: -0.2263 S12: 0.5653 S13: -0.1160 REMARK 3 S21: 0.1935 S22: -0.0922 S23: 0.1335 REMARK 3 S31: 0.9836 S32: 0.0788 S33: -0.0145 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'D' AND (RESID 29 THROUGH 47 ) REMARK 3 ORIGIN FOR THE GROUP (A): 43.2333 29.4605 6.0258 REMARK 3 T TENSOR REMARK 3 T11: 0.1862 T22: 0.2108 REMARK 3 T33: 0.1942 T12: -0.0184 REMARK 3 T13: -0.0366 T23: 0.0089 REMARK 3 L TENSOR REMARK 3 L11: 0.1288 L22: 0.2125 REMARK 3 L33: 0.0832 L12: -0.1822 REMARK 3 L13: 0.0545 L23: -0.0693 REMARK 3 S TENSOR REMARK 3 S11: 0.0277 S12: 0.1674 S13: -0.0443 REMARK 3 S21: 0.0604 S22: -0.1028 S23: -0.1613 REMARK 3 S31: 0.0458 S32: 0.2966 S33: 0.0002 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'D' AND (RESID 48 THROUGH 60 ) REMARK 3 ORIGIN FOR THE GROUP (A): 47.3534 35.6097 22.4726 REMARK 3 T TENSOR REMARK 3 T11: 0.2947 T22: 0.2689 REMARK 3 T33: 0.2724 T12: -0.0390 REMARK 3 T13: -0.0125 T23: -0.0198 REMARK 3 L TENSOR REMARK 3 L11: 0.1223 L22: 0.0581 REMARK 3 L33: -0.0105 L12: 0.0537 REMARK 3 L13: -0.0049 L23: 0.0431 REMARK 3 S TENSOR REMARK 3 S11: 0.0969 S12: -0.0204 S13: -0.2443 REMARK 3 S21: 0.0160 S22: -0.1050 S23: 0.1592 REMARK 3 S31: 0.0975 S32: 0.0912 S33: -0.0002 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'D' AND (RESID 61 THROUGH 82 ) REMARK 3 ORIGIN FOR THE GROUP (A): 42.9530 36.2901 0.9662 REMARK 3 T TENSOR REMARK 3 T11: 0.2462 T22: 0.2304 REMARK 3 T33: 0.2635 T12: 0.0028 REMARK 3 T13: -0.0306 T23: 0.0069 REMARK 3 L TENSOR REMARK 3 L11: 0.3796 L22: -0.0379 REMARK 3 L33: 0.1036 L12: -0.0007 REMARK 3 L13: -0.1919 L23: -0.0290 REMARK 3 S TENSOR REMARK 3 S11: -0.0526 S12: 0.1396 S13: 0.1217 REMARK 3 S21: -0.0928 S22: -0.0339 S23: 0.0770 REMARK 3 S31: -0.2269 S32: 0.1993 S33: -0.0001 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'D' AND (RESID 83 THROUGH 97 ) REMARK 3 ORIGIN FOR THE GROUP (A): 26.5664 38.4069 -5.5711 REMARK 3 T TENSOR REMARK 3 T11: 0.2919 T22: 0.3526 REMARK 3 T33: 0.3442 T12: 0.0653 REMARK 3 T13: -0.0874 T23: -0.0677 REMARK 3 L TENSOR REMARK 3 L11: 0.1236 L22: 0.0802 REMARK 3 L33: 0.0319 L12: -0.0682 REMARK 3 L13: -0.0610 L23: -0.0112 REMARK 3 S TENSOR REMARK 3 S11: -0.0150 S12: 0.1716 S13: -0.0722 REMARK 3 S21: -0.1513 S22: -0.4765 S23: 0.4900 REMARK 3 S31: -0.4309 S32: -0.3393 S33: -0.0056 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'D' AND (RESID 98 THROUGH 103 ) REMARK 3 ORIGIN FOR THE GROUP (A): 24.8859 38.2652 10.6046 REMARK 3 T TENSOR REMARK 3 T11: 0.3625 T22: 0.5861 REMARK 3 T33: 0.3684 T12: 0.1086 REMARK 3 T13: -0.0120 T23: -0.0519 REMARK 3 L TENSOR REMARK 3 L11: 0.0284 L22: 0.0078 REMARK 3 L33: 0.0441 L12: 0.0088 REMARK 3 L13: -0.0377 L23: 0.0044 REMARK 3 S TENSOR REMARK 3 S11: 0.3237 S12: -0.2196 S13: 0.3299 REMARK 3 S21: 0.0089 S22: -0.1821 S23: 0.5229 REMARK 3 S31: -0.2861 S32: -0.6898 S33: -0.0001 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'D' AND (RESID 104 THROUGH 109 ) REMARK 3 ORIGIN FOR THE GROUP (A): 33.4768 37.5896 18.0089 REMARK 3 T TENSOR REMARK 3 T11: 0.3453 T22: 0.3258 REMARK 3 T33: 0.3080 T12: 0.0705 REMARK 3 T13: -0.0729 T23: -0.0583 REMARK 3 L TENSOR REMARK 3 L11: 0.0003 L22: 0.0084 REMARK 3 L33: 0.0262 L12: 0.0094 REMARK 3 L13: -0.0016 L23: 0.0060 REMARK 3 S TENSOR REMARK 3 S11: -0.3087 S12: 0.0019 S13: 0.3163 REMARK 3 S21: 0.2763 S22: 0.1114 S23: -0.2364 REMARK 3 S31: -0.3667 S32: 0.0641 S33: 0.0005 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN 'D' AND (RESID 110 THROUGH 120 ) REMARK 3 ORIGIN FOR THE GROUP (A): 34.5493 27.0503 13.5474 REMARK 3 T TENSOR REMARK 3 T11: 0.2375 T22: 0.3260 REMARK 3 T33: 0.2657 T12: -0.0197 REMARK 3 T13: -0.0040 T23: -0.0099 REMARK 3 L TENSOR REMARK 3 L11: 0.1150 L22: 0.1469 REMARK 3 L33: 0.1145 L12: 0.1287 REMARK 3 L13: -0.0309 L23: -0.0783 REMARK 3 S TENSOR REMARK 3 S11: -0.0851 S12: -0.0755 S13: -0.0995 REMARK 3 S21: -0.0628 S22: 0.0023 S23: 0.0488 REMARK 3 S31: -0.2671 S32: -0.2302 S33: 0.0002 REMARK 3 TLS GROUP : 11 REMARK 3 SELECTION: CHAIN 'D' AND (RESID 121 THROUGH 126 ) REMARK 3 ORIGIN FOR THE GROUP (A): 31.0167 22.2874 2.1602 REMARK 3 T TENSOR REMARK 3 T11: 0.5273 T22: 0.3327 REMARK 3 T33: 0.4204 T12: -0.0117 REMARK 3 T13: 0.0527 T23: 0.0395 REMARK 3 L TENSOR REMARK 3 L11: 0.0256 L22: 0.0116 REMARK 3 L33: -0.0094 L12: -0.0158 REMARK 3 L13: 0.0268 L23: -0.0250 REMARK 3 S TENSOR REMARK 3 S11: 0.0554 S12: -0.2705 S13: -0.6112 REMARK 3 S21: -0.0099 S22: -0.5132 S23: 0.5408 REMARK 3 S31: 1.2510 S32: -0.2536 S33: -0.0006 REMARK 3 TLS GROUP : 12 REMARK 3 SELECTION: CHAIN 'D' AND (RESID 127 THROUGH 143 ) REMARK 3 ORIGIN FOR THE GROUP (A): 34.0856 38.7284 5.4440 REMARK 3 T TENSOR REMARK 3 T11: 0.2294 T22: 0.2714 REMARK 3 T33: 0.2497 T12: 0.0380 REMARK 3 T13: -0.0504 T23: -0.0551 REMARK 3 L TENSOR REMARK 3 L11: 0.0355 L22: 0.0987 REMARK 3 L33: -0.0111 L12: -0.1201 REMARK 3 L13: 0.0092 L23: -0.0407 REMARK 3 S TENSOR REMARK 3 S11: -0.0130 S12: -0.1205 S13: 0.1559 REMARK 3 S21: -0.1530 S22: -0.0514 S23: 0.0388 REMARK 3 S31: -0.1793 S32: -0.1878 S33: -0.0003 REMARK 3 TLS GROUP : 13 REMARK 3 SELECTION: CHAIN 'D' AND (RESID 144 THROUGH 165 ) REMARK 3 ORIGIN FOR THE GROUP (A): 49.1509 43.1490 -3.3297 REMARK 3 T TENSOR REMARK 3 T11: 0.3214 T22: 0.3318 REMARK 3 T33: 0.3766 T12: -0.0408 REMARK 3 T13: -0.0239 T23: 0.0294 REMARK 3 L TENSOR REMARK 3 L11: 0.4007 L22: 0.2441 REMARK 3 L33: 0.4535 L12: 0.1515 REMARK 3 L13: 0.5110 L23: 0.0485 REMARK 3 S TENSOR REMARK 3 S11: 0.0298 S12: 0.4836 S13: 0.2854 REMARK 3 S21: -0.2243 S22: -0.0887 S23: -0.2493 REMARK 3 S31: -0.2589 S32: 0.1476 S33: -0.0001 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5MYI COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 26-JAN-17. REMARK 100 THE DEPOSITION ID IS D_1200003249. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 20-FEB-15 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALBA REMARK 200 BEAMLINE : XALOC REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97948 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 19182 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.900 REMARK 200 RESOLUTION RANGE LOW (A) : 68.810 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 9.300 REMARK 200 R MERGE (I) : 0.04000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 11.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.90 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.00 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 9.40 REMARK 200 R MERGE FOR SHELL (I) : 0.39000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.300 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 48.07 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.37 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 30% PEG400 0.2 M MGCL2, 0.1 M HEPES REMARK 280 7.5, PH 7.5, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 296K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 61 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+5/6 REMARK 290 6555 X-Y,X,Z+1/6 REMARK 290 7555 Y,X,-Z+1/3 REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z+2/3 REMARK 290 10555 -Y,-X,-Z+5/6 REMARK 290 11555 -X+Y,Y,-Z+1/2 REMARK 290 12555 X,X-Y,-Z+1/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 41.93667 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 83.87333 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 62.90500 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 104.84167 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 20.96833 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 41.93667 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 83.87333 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 104.84167 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 62.90500 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 20.96833 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2790 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 17070 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -78.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.500000 -0.866025 0.000000 39.72500 REMARK 350 BIOMT2 2 -0.866025 -0.500000 0.000000 68.80572 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 -20.96833 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET D -33 REMARK 465 GLY D -32 REMARK 465 SER D -31 REMARK 465 SER D -30 REMARK 465 HIS D -29 REMARK 465 HIS D -28 REMARK 465 HIS D -27 REMARK 465 HIS D -26 REMARK 465 HIS D -25 REMARK 465 HIS D -24 REMARK 465 SER D -23 REMARK 465 SER D -22 REMARK 465 GLY D -21 REMARK 465 LEU D -20 REMARK 465 VAL D -19 REMARK 465 PRO D -18 REMARK 465 ARG D -17 REMARK 465 GLY D -16 REMARK 465 SER D -15 REMARK 465 HIS D -14 REMARK 465 MET D -13 REMARK 465 ALA D -12 REMARK 465 SER D -11 REMARK 465 MET D -10 REMARK 465 THR D -9 REMARK 465 GLY D -8 REMARK 465 GLY D -7 REMARK 465 GLN D -6 REMARK 465 GLN D -5 REMARK 465 MET D -4 REMARK 465 GLY D -3 REMARK 465 ARG D -2 REMARK 465 GLY D -1 REMARK 465 SER D 0 REMARK 465 ALA D 166 REMARK 465 ASP D 167 REMARK 465 ALA D 168 REMARK 465 GLY D 169 REMARK 465 LYS D 170 REMARK 465 GLY D 171 REMARK 465 TYR D 172 REMARK 465 VAL D 173 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 MET D 1 CG SD CE REMARK 470 GLN D 15 CD OE1 NE2 REMARK 470 LYS D 18 CD CE NZ REMARK 470 LYS D 55 CD CE NZ REMARK 470 LYS D 56 CD CE NZ REMARK 470 GLU D 86 CD OE1 OE2 REMARK 470 ASP D 124 CG OD1 OD2 REMARK 470 LYS D 153 CD CE NZ REMARK 470 LYS D 156 CD CE NZ REMARK 470 ARG D 157 NE CZ NH1 NH2 REMARK 470 ARG D 161 NE CZ NH1 NH2 REMARK 470 THR D 165 OG1 CG2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH D 383 O HOH D 388 1.94 REMARK 500 O HOH D 383 O HOH D 386 2.07 REMARK 500 O HOH D 386 O HOH D 388 2.07 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LEU D 102 57.86 -107.17 REMARK 500 TYR D 142 -133.07 -129.68 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA D 202 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU D 39 OE1 REMARK 620 2 GLU D 42 OE1 90.4 REMARK 620 3 GLU D 42 OE1 81.8 9.8 REMARK 620 4 GLU D 67 OE1 165.6 89.6 96.7 REMARK 620 5 ASP D 70 OD2 94.1 160.1 164.9 90.8 REMARK 620 6 HOH D 375 O 96.0 78.3 84.0 98.1 81.9 REMARK 620 7 HOH D 322 O 81.6 107.6 101.5 84.7 92.2 173.6 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA D 201 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLN D 82 O REMARK 620 2 GLY D 83 O 82.2 REMARK 620 3 HOH D 344 O 99.5 80.2 REMARK 620 4 HOH D 316 O 165.9 87.8 88.6 REMARK 620 5 HOH D 388 O 82.5 80.4 160.1 86.0 REMARK 620 6 HOH D 383 O 97.4 157.1 77.3 95.7 122.3 REMARK 620 7 HOH D 388 O 96.0 156.5 123.0 89.2 76.1 46.3 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG D 207 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP D 97 OD2 REMARK 620 2 HOH D 330 O 67.2 REMARK 620 3 HOH D 307 O 64.0 96.7 REMARK 620 4 HOH D 346 O 84.7 91.5 140.9 REMARK 620 5 LYS D 56 O 21.1 85.3 70.0 72.7 REMARK 620 6 GLY D 58 O 17.1 82.1 68.2 75.2 4.0 REMARK 620 7 HOH D 333 O 139.4 78.4 143.9 75.2 143.4 143.9 REMARK 620 N 1 2 3 4 5 6 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CA D 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CA D 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PEG D 203 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PEG D 204 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PEG D 205 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG D 207 DBREF 5MYI D -33 173 PDB 5MYI 5MYI -33 173 SEQRES 1 D 207 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 D 207 LEU VAL PRO ARG GLY SER HIS MET ALA SER MET THR GLY SEQRES 3 D 207 GLY GLN GLN MET GLY ARG GLY SER MET THR ASN THR LEU SEQRES 4 D 207 THR THR ASP GLN LEU GLN GLU LEU LEU GLN ILE GLN LYS SEQRES 5 D 207 GLU PHE ASP ASP ARG ILE PRO THR LEU ASN LEU GLY ASP SEQRES 6 D 207 SER LYS ILE ALA TYR VAL VAL GLU PHE PHE GLU TRP PHE SEQRES 7 D 207 ASN THR LEU GLU THR PHE LYS ASN TRP LYS LYS LYS PRO SEQRES 8 D 207 GLY LYS PRO LEU ASP VAL GLN LEU ASP GLU LEU ALA ASP SEQRES 9 D 207 ILE LEU LEU PHE GLY LEU SER ILE ALA ASN GLN GLN GLY SEQRES 10 D 207 PHE GLU GLU TYR ASP ARG ASP LEU PHE PHE GLU SER PHE SEQRES 11 D 207 ASP GLU GLU TYR PHE LEU ASP PHE PRO TYR LEU ARG ASN SEQRES 12 D 207 GLN ASP MET ILE TYR ASP MET MET SER GLU PHE TYR ASP SEQRES 13 D 207 ASP ASP LEU THR SER ILE ARG ARG LEU VAL ILE VAL PHE SEQRES 14 D 207 LYS ILE ALA GLU GLN LEU TYR THR ILE ASP GLN LEU ILE SEQRES 15 D 207 ASP ALA TYR LYS LYS LYS MET LYS ARG ASN HIS GLU ARG SEQRES 16 D 207 GLN ASP GLY THR ALA ASP ALA GLY LYS GLY TYR VAL HET CA D 201 1 HET CA D 202 1 HET PEG D 203 7 HET PEG D 204 7 HET PEG D 205 7 HET CL D 206 1 HET MG D 207 1 HETNAM CA CALCIUM ION HETNAM PEG DI(HYDROXYETHYL)ETHER HETNAM CL CHLORIDE ION HETNAM MG MAGNESIUM ION FORMUL 2 CA 2(CA 2+) FORMUL 4 PEG 3(C4 H10 O3) FORMUL 7 CL CL 1- FORMUL 8 MG MG 2+ FORMUL 9 HOH *103(H2 O) HELIX 1 AA1 THR D 6 ASP D 22 1 17 HELIX 2 AA2 ASN D 28 GLU D 48 1 21 HELIX 3 AA3 PRO D 60 GLY D 83 1 24 HELIX 4 AA4 GLU D 85 GLU D 98 1 14 HELIX 5 AA5 ASP D 103 ARG D 108 1 6 HELIX 6 AA6 ASP D 111 TYR D 121 1 11 HELIX 7 AA7 THR D 126 TYR D 142 1 17 HELIX 8 AA8 THR D 143 GLY D 164 1 22 LINK OE1 GLU D 39 CA CA D 202 1555 1555 2.31 LINK OE1AGLU D 42 CA CA D 202 1555 1555 2.37 LINK OE1BGLU D 42 CA CA D 202 1555 1555 2.28 LINK OE1 GLU D 67 CA CA D 202 1555 1555 2.28 LINK OD2 ASP D 70 CA CA D 202 1555 1555 2.29 LINK O GLN D 82 CA CA D 201 1555 1555 2.37 LINK O GLY D 83 CA CA D 201 1555 1555 2.38 LINK OD2 ASP D 97 MG MG D 207 1555 1555 2.58 LINK CA CA D 201 O HOH D 344 1555 1555 2.44 LINK CA CA D 201 O HOH D 316 1555 1555 2.31 LINK CA CA D 201 O HOH D 388 1555 1555 2.44 LINK CA CA D 202 O HOH D 375 1555 1555 2.35 LINK CA CA D 202 O HOH D 322 1555 1555 2.49 LINK MG MG D 207 O HOH D 330 1555 1555 2.25 LINK MG MG D 207 O HOH D 307 1555 1555 2.13 LINK MG MG D 207 O HOH D 346 1555 1555 2.24 LINK O LYS D 56 MG MG D 207 1555 6655 2.32 LINK O GLY D 58 MG MG D 207 1555 6655 2.42 LINK CA CA D 201 O HOH D 383 1555 10664 2.46 LINK CA CA D 201 O HOH D 388 1555 10664 2.47 LINK MG MG D 207 O HOH D 333 1555 5564 2.38 SITE 1 AC1 6 GLN D 82 GLY D 83 HOH D 316 HOH D 344 SITE 2 AC1 6 HOH D 383 HOH D 388 SITE 1 AC2 6 GLU D 39 GLU D 42 GLU D 67 ASP D 70 SITE 2 AC2 6 HOH D 322 HOH D 375 SITE 1 AC3 2 ASN D 3 GLN D 140 SITE 1 AC4 7 GLU D 99 PHE D 101 GLU D 119 ARG D 129 SITE 2 AC4 7 GLY D 164 THR D 165 PEG D 205 SITE 1 AC5 5 PHE D 101 TYR D 106 ASP D 115 GLY D 164 SITE 2 AC5 5 PEG D 204 SITE 1 AC6 7 LYS D 56 GLY D 58 ASP D 97 HOH D 307 SITE 2 AC6 7 HOH D 330 HOH D 333 HOH D 346 CRYST1 79.450 79.450 125.810 90.00 90.00 120.00 P 61 2 2 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012587 0.007267 0.000000 0.00000 SCALE2 0.000000 0.014534 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007948 0.00000