HEADER IMMUNE SYSTEM 26-JAN-17 5MYK TITLE STRUCTURE OF PYROGLUTAMATE-ABETA-SPECIFIC FAB C#17 IN COMPLEX WITH TITLE 2 MURINE ABETA-PE3-18PEGB COMPND MOL_ID: 1; COMPND 2 MOLECULE: FAB C#17 LIGHT CHAIN; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: FAB C#17 HEAVY CHAIN; COMPND 7 CHAIN: B; COMPND 8 ENGINEERED: YES; COMPND 9 MOL_ID: 3; COMPND 10 MOLECULE: AMYLOID BETA A4 PROTEIN; COMPND 11 CHAIN: C; COMPND 12 SYNONYM: ABPP,APP,ALZHEIMER DISEASE AMYLOID A4 PROTEIN HOMOLOG, COMPND 13 AMYLOID PRECURSOR PROTEIN,AMYLOIDOGENIC GLYCOPROTEIN,AG,BETA-AMYLOID COMPND 14 PRECURSOR PROTEIN; COMPND 15 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 3 ORGANISM_COMMON: HOUSE MOUSE; SOURCE 4 ORGANISM_TAXID: 10090; SOURCE 5 EXPRESSION_SYSTEM: MUS MUSCULUS; SOURCE 6 EXPRESSION_SYSTEM_COMMON: HOUSE MOUSE; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 10090; SOURCE 8 MOL_ID: 2; SOURCE 9 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 10 ORGANISM_COMMON: HOUSE MOUSE; SOURCE 11 ORGANISM_TAXID: 10090; SOURCE 12 EXPRESSION_SYSTEM: MUS MUSCULUS; SOURCE 13 EXPRESSION_SYSTEM_COMMON: HOUSE MOUSE; SOURCE 14 EXPRESSION_SYSTEM_TAXID: 10090; SOURCE 15 MOL_ID: 3; SOURCE 16 SYNTHETIC: YES; SOURCE 17 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 18 ORGANISM_COMMON: HOUSE MOUSE; SOURCE 19 ORGANISM_TAXID: 10090 KEYWDS ALZHEIMER'S DISEASE, PYROGLUTAMATE ABETA, MONOCLONAL ANTIBODY, KEYWDS 2 FIBRILLATION, IMMUNE SYSTEM EXPDTA X-RAY DIFFRACTION AUTHOR C.PARTHIER,A.PIECHOTTA,M.T.STUBBS REVDAT 4 17-JAN-24 5MYK 1 REMARK REVDAT 3 11-MAR-20 5MYK 1 SEQRES ATOM REVDAT 2 09-AUG-17 5MYK 1 JRNL REVDAT 1 28-JUN-17 5MYK 0 JRNL AUTH A.PIECHOTTA,C.PARTHIER,M.KLEINSCHMIDT,K.GNOTH,T.PILLOT, JRNL AUTH 2 I.LUES,H.U.DEMUTH,S.SCHILLING,J.U.RAHFELD,M.T.STUBBS JRNL TITL STRUCTURAL AND FUNCTIONAL ANALYSES OF JRNL TITL 2 PYROGLUTAMATE-AMYLOID-BETA-SPECIFIC ANTIBODIES AS A BASIS JRNL TITL 3 FOR ALZHEIMER IMMUNOTHERAPY. JRNL REF J. BIOL. CHEM. V. 292 12713 2017 JRNL REFN ESSN 1083-351X JRNL PMID 28623233 JRNL DOI 10.1074/JBC.M117.777839 REMARK 2 REMARK 2 RESOLUTION. 1.60 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.60 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 19.33 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.980 REMARK 3 COMPLETENESS FOR RANGE (%) : 94.6 REMARK 3 NUMBER OF REFLECTIONS : 48636 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.175 REMARK 3 R VALUE (WORKING SET) : 0.173 REMARK 3 FREE R VALUE : 0.210 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 2433 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 19.3270 - 4.1017 0.93 2680 142 0.1359 0.1463 REMARK 3 2 4.1017 - 3.2607 0.93 2682 141 0.1399 0.1743 REMARK 3 3 3.2607 - 2.8500 0.94 2717 143 0.1692 0.2010 REMARK 3 4 2.8500 - 2.5901 0.96 2733 144 0.1718 0.2060 REMARK 3 5 2.5901 - 2.4048 0.96 2747 144 0.1848 0.2316 REMARK 3 6 2.4048 - 2.2633 0.95 2739 144 0.1815 0.2335 REMARK 3 7 2.2633 - 2.1501 0.95 2722 143 0.1788 0.2385 REMARK 3 8 2.1501 - 2.0566 0.95 2747 145 0.1795 0.2360 REMARK 3 9 2.0566 - 1.9775 0.95 2734 144 0.1861 0.2585 REMARK 3 10 1.9775 - 1.9093 0.95 2753 145 0.1870 0.2289 REMARK 3 11 1.9093 - 1.8497 0.95 2697 142 0.1995 0.2683 REMARK 3 12 1.8497 - 1.7968 0.95 2746 144 0.2121 0.2356 REMARK 3 13 1.7968 - 1.7496 0.95 2726 144 0.2251 0.2737 REMARK 3 14 1.7496 - 1.7069 0.94 2690 141 0.2335 0.2664 REMARK 3 15 1.7069 - 1.6681 0.94 2739 145 0.2503 0.3339 REMARK 3 16 1.6681 - 1.6326 0.95 2711 142 0.2711 0.2822 REMARK 3 17 1.6326 - 1.6000 0.92 2640 140 0.2842 0.3260 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.190 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 23.950 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 19.76 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 25.63 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.006 3484 REMARK 3 ANGLE : 0.857 4749 REMARK 3 CHIRALITY : 0.054 530 REMARK 3 PLANARITY : 0.005 606 REMARK 3 DIHEDRAL : 6.001 2454 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 9 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 1 THROUGH 18 ) REMARK 3 ORIGIN FOR THE GROUP (A): 2.0469 -11.6256 -1.3157 REMARK 3 T TENSOR REMARK 3 T11: 0.3871 T22: 0.1806 REMARK 3 T33: 0.2072 T12: 0.0561 REMARK 3 T13: -0.0359 T23: 0.0096 REMARK 3 L TENSOR REMARK 3 L11: 4.8256 L22: 1.3481 REMARK 3 L33: 1.6990 L12: -0.2172 REMARK 3 L13: -0.3076 L23: -0.4770 REMARK 3 S TENSOR REMARK 3 S11: 0.0751 S12: 0.1174 S13: -0.2134 REMARK 3 S21: -0.1269 S22: -0.0193 S23: -0.0809 REMARK 3 S31: 0.7494 S32: 0.1037 S33: 0.0195 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 19 THROUGH 53 ) REMARK 3 ORIGIN FOR THE GROUP (A): -5.5172 -2.4553 -3.9197 REMARK 3 T TENSOR REMARK 3 T11: 0.1928 T22: 0.1424 REMARK 3 T33: 0.1433 T12: -0.0236 REMARK 3 T13: -0.0364 T23: -0.0105 REMARK 3 L TENSOR REMARK 3 L11: 1.5104 L22: 1.4622 REMARK 3 L33: 2.2169 L12: -0.4616 REMARK 3 L13: 0.5463 L23: -0.4679 REMARK 3 S TENSOR REMARK 3 S11: 0.0382 S12: -0.1421 S13: -0.1396 REMARK 3 S21: -0.2197 S22: 0.0597 S23: 0.0502 REMARK 3 S31: 0.4558 S32: -0.1336 S33: -0.0306 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 54 THROUGH 95 ) REMARK 3 ORIGIN FOR THE GROUP (A): 2.2045 -2.3165 -6.5987 REMARK 3 T TENSOR REMARK 3 T11: 0.1913 T22: 0.1239 REMARK 3 T33: 0.1360 T12: 0.0170 REMARK 3 T13: -0.0087 T23: -0.0020 REMARK 3 L TENSOR REMARK 3 L11: 0.9790 L22: 1.0914 REMARK 3 L33: 2.0216 L12: -0.9312 REMARK 3 L13: 0.3153 L23: -0.5772 REMARK 3 S TENSOR REMARK 3 S11: 0.0397 S12: -0.0223 S13: 0.0815 REMARK 3 S21: -0.2169 S22: -0.1255 S23: -0.1826 REMARK 3 S31: 0.3715 S32: 0.1115 S33: 0.0164 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 96 THROUGH 118 ) REMARK 3 ORIGIN FOR THE GROUP (A): 1.1773 -10.4148 3.2464 REMARK 3 T TENSOR REMARK 3 T11: 0.1814 T22: 0.2031 REMARK 3 T33: 0.1678 T12: -0.0055 REMARK 3 T13: -0.0023 T23: 0.0091 REMARK 3 L TENSOR REMARK 3 L11: 0.7191 L22: 0.9978 REMARK 3 L33: 0.5595 L12: -0.7127 REMARK 3 L13: 0.5441 L23: -0.7619 REMARK 3 S TENSOR REMARK 3 S11: 0.1492 S12: 0.1678 S13: 0.1062 REMARK 3 S21: -0.2677 S22: -0.1814 S23: -0.0610 REMARK 3 S31: 0.3330 S32: 0.0294 S33: 0.0495 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 119 THROUGH 219 ) REMARK 3 ORIGIN FOR THE GROUP (A): 6.9974 -24.5830 25.4620 REMARK 3 T TENSOR REMARK 3 T11: 0.1817 T22: 0.1272 REMARK 3 T33: 0.1392 T12: 0.0218 REMARK 3 T13: -0.0040 T23: 0.0033 REMARK 3 L TENSOR REMARK 3 L11: 1.3274 L22: 0.8539 REMARK 3 L33: 2.1020 L12: 0.1608 REMARK 3 L13: -1.1444 L23: -0.2008 REMARK 3 S TENSOR REMARK 3 S11: 0.0905 S12: 0.1549 S13: 0.0782 REMARK 3 S21: 0.0733 S22: -0.0031 S23: -0.0850 REMARK 3 S31: -0.1046 S32: -0.1955 S33: -0.0712 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 1 THROUGH 112 ) REMARK 3 ORIGIN FOR THE GROUP (A): -12.1962 8.9982 9.4629 REMARK 3 T TENSOR REMARK 3 T11: 0.1168 T22: 0.1773 REMARK 3 T33: 0.1615 T12: -0.0111 REMARK 3 T13: 0.0216 T23: 0.0103 REMARK 3 L TENSOR REMARK 3 L11: 0.8720 L22: 0.7281 REMARK 3 L33: 1.9592 L12: -0.0433 REMARK 3 L13: -0.2053 L23: -0.1600 REMARK 3 S TENSOR REMARK 3 S11: 0.0545 S12: -0.0152 S13: 0.0338 REMARK 3 S21: 0.0575 S22: 0.0710 S23: 0.0932 REMARK 3 S31: -0.0895 S32: -0.1514 S33: -0.1190 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 113 THROUGH 154 ) REMARK 3 ORIGIN FOR THE GROUP (A): 6.0784 -9.7006 30.3832 REMARK 3 T TENSOR REMARK 3 T11: 0.2056 T22: 0.1383 REMARK 3 T33: 0.2081 T12: -0.0074 REMARK 3 T13: 0.0251 T23: -0.0154 REMARK 3 L TENSOR REMARK 3 L11: 1.0448 L22: 1.3608 REMARK 3 L33: 1.0699 L12: -0.6249 REMARK 3 L13: 0.4566 L23: -0.2146 REMARK 3 S TENSOR REMARK 3 S11: -0.1210 S12: 0.0824 S13: -0.1573 REMARK 3 S21: 0.2613 S22: 0.0650 S23: -0.0997 REMARK 3 S31: 0.0664 S32: 0.0475 S33: 0.0174 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 155 THROUGH 222 ) REMARK 3 ORIGIN FOR THE GROUP (A): 14.2371 -10.2177 31.3671 REMARK 3 T TENSOR REMARK 3 T11: 0.2029 T22: 0.1214 REMARK 3 T33: 0.2480 T12: -0.0022 REMARK 3 T13: 0.0139 T23: -0.0254 REMARK 3 L TENSOR REMARK 3 L11: 1.1769 L22: 1.2444 REMARK 3 L33: 1.4274 L12: -0.4667 REMARK 3 L13: -0.3871 L23: 0.3822 REMARK 3 S TENSOR REMARK 3 S11: -0.0744 S12: -0.0498 S13: -0.0170 REMARK 3 S21: 0.0494 S22: 0.0358 S23: -0.1643 REMARK 3 S31: -0.0492 S32: 0.1428 S33: 0.0202 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 2 THROUGH 6 ) REMARK 3 ORIGIN FOR THE GROUP (A): -19.2732 12.9627 -3.1707 REMARK 3 T TENSOR REMARK 3 T11: 0.1475 T22: 0.3421 REMARK 3 T33: 0.1992 T12: 0.0004 REMARK 3 T13: -0.0425 T23: 0.0581 REMARK 3 L TENSOR REMARK 3 L11: 2.0205 L22: 0.9501 REMARK 3 L33: 2.0258 L12: 0.8207 REMARK 3 L13: -0.8106 L23: 0.4237 REMARK 3 S TENSOR REMARK 3 S11: -0.0315 S12: 0.1828 S13: 0.1442 REMARK 3 S21: -0.2480 S22: 0.1095 S23: 0.1171 REMARK 3 S31: -0.1375 S32: -0.0788 S33: -0.1164 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5MYK COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 27-JAN-17. REMARK 100 THE DEPOSITION ID IS D_1200003250. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 28-MAY-13 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : BESSY REMARK 200 BEAMLINE : 14.2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9184 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 225 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 48637 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.600 REMARK 200 RESOLUTION RANGE LOW (A) : 19.326 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 94.5 REMARK 200 DATA REDUNDANCY : 1.993 REMARK 200 R MERGE (I) : 0.02900 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 16.3300 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.60 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.70 REMARK 200 COMPLETENESS FOR SHELL (%) : 93.7 REMARK 200 DATA REDUNDANCY IN SHELL : 1.99 REMARK 200 R MERGE FOR SHELL (I) : 0.41300 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.980 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER 2.5.2 REMARK 200 STARTING MODEL: 5MY4 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 38.12 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.99 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M HEPES SODIUM SALT 0.2M CALCIUM REMARK 280 ACETATE 18% W/V PEG 8000, PH 7.5, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 286K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4720 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 19620 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -34.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY B 138 REMARK 465 ASP B 139 REMARK 465 THR B 140 REMARK 465 THR B 141 REMARK 465 GLY B 223 REMARK 465 PRO B 224 REMARK 465 ILE B 225 REMARK 465 SER B 226 REMARK 465 THR B 227 REMARK 465 ILE B 228 REMARK 465 ASN B 229 REMARK 465 PRO B 230 REMARK 465 CYS B 231 REMARK 465 GLY C 7 REMARK 465 PHE C 8 REMARK 465 GLU C 9 REMARK 465 VAL C 10 REMARK 465 ARG C 11 REMARK 465 HIS C 12 REMARK 465 GLN C 13 REMARK 465 LYS C 14 REMARK 465 LEU C 15 REMARK 465 VAL C 16 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 301 O HOH A 345 1.89 REMARK 500 NZ LYS B 124 O HOH B 301 2.04 REMARK 500 OE1 GLN A 161 O HOH A 301 2.04 REMARK 500 O HOH A 309 O HOH A 394 2.08 REMARK 500 O HOH B 403 O HOH B 463 2.15 REMARK 500 O HOH A 504 O HOH A 505 2.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 458 O HOH B 374 1645 2.12 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 VAL A 56 -52.03 74.44 REMARK 500 ASN B 103 -93.71 -132.33 REMARK 500 SER B 169 -25.09 -142.66 REMARK 500 REMARK 500 REMARK: NULL DBREF 5MYK A 1 219 PDB 5MYK 5MYK 1 219 DBREF 5MYK B 1 231 PDB 5MYK 5MYK 1 231 DBREF 5MYK C 1 16 UNP P12023 A4_MOUSE 674 689 SEQRES 1 A 219 ASP VAL VAL MET THR GLN THR PRO LEU SER LEU PRO VAL SEQRES 2 A 219 SER LEU GLY ASP GLN ALA SER ILE SER CYS ARG SER SER SEQRES 3 A 219 GLN SER LEU VAL HIS SER ASP GLY ASN THR TYR LEU HIS SEQRES 4 A 219 TRP TYR LEU GLN LYS PRO GLY GLN SER PRO LYS LEU LEU SEQRES 5 A 219 ILE TYR LYS VAL SER ASN ARG PHE SER GLY VAL PRO ASP SEQRES 6 A 219 ARG PHE SER GLY SER GLY SER GLY THR ASP PHE THR LEU SEQRES 7 A 219 LYS ILE SER ARG VAL GLU ALA GLU ASP LEU GLY VAL TYR SEQRES 8 A 219 PHE CYS SER GLN SER THR HIS VAL PRO PRO THR PHE GLY SEQRES 9 A 219 GLY GLY THR LYS LEU GLU ILE LYS ARG ALA ASP ALA ALA SEQRES 10 A 219 PRO THR VAL SER ILE PHE PRO PRO SER SER GLU GLN LEU SEQRES 11 A 219 THR SER GLY GLY ALA SER VAL VAL CYS PHE LEU ASN ASN SEQRES 12 A 219 PHE TYR PRO LYS ASP ILE ASN VAL LYS TRP LYS ILE ASP SEQRES 13 A 219 GLY SER GLU ARG GLN ASN GLY VAL LEU ASN SER TRP THR SEQRES 14 A 219 ASP GLN ASP SER LYS ASP SER THR TYR SER MET SER SER SEQRES 15 A 219 THR LEU THR LEU THR LYS ASP GLU TYR GLU ARG HIS ASN SEQRES 16 A 219 SER TYR THR CYS GLU ALA THR HIS LYS THR SER THR SER SEQRES 17 A 219 PRO ILE VAL LYS SER PHE ASN ARG ASN GLU CYS SEQRES 1 B 231 GLU VAL LYS LEU VAL GLU SER GLY GLY GLY LEU VAL GLN SEQRES 2 B 231 PRO GLY GLY SER ARG LYS LEU SER CYS ALA ALA SER GLY SEQRES 3 B 231 PHE THR PHE SER ASP TYR GLY MET ALA TRP VAL ARG GLN SEQRES 4 B 231 ALA PRO GLY LYS GLY PRO GLU TRP VAL ALA PHE ILE SER SEQRES 5 B 231 ASN LEU ALA TYR SER ILE TYR TYR ALA ASP THR VAL THR SEQRES 6 B 231 GLY ARG PHE THR ILE SER ARG GLU ASN ALA LYS ASN THR SEQRES 7 B 231 LEU TYR LEU GLU MET SER SER LEU ARG SER GLU ASP THR SEQRES 8 B 231 ALA MET TYR TYR CYS ALA ARG TYR ASP TYR ASP ASN ILE SEQRES 9 B 231 LEU ASP TYR VAL MET ASP TYR TRP GLY GLN GLY THR SER SEQRES 10 B 231 VAL THR VAL SER SER ALA LYS THR THR PRO PRO SER VAL SEQRES 11 B 231 TYR PRO LEU ALA PRO GLY CYS GLY ASP THR THR GLY SER SEQRES 12 B 231 SER VAL THR LEU GLY CYS LEU VAL LYS GLY TYR PHE PRO SEQRES 13 B 231 GLU SER VAL THR VAL THR TRP ASN SER GLY SER LEU SER SEQRES 14 B 231 SER SER VAL HIS THR PHE PRO ALA LEU LEU GLN SER GLY SEQRES 15 B 231 LEU TYR THR MET SER SER SER VAL THR VAL PRO SER SER SEQRES 16 B 231 THR TRP PRO SER GLN THR VAL THR CYS SER VAL ALA HIS SEQRES 17 B 231 PRO ALA SER SER THR THR VAL ASP LYS LYS LEU GLU PRO SEQRES 18 B 231 SER GLY PRO ILE SER THR ILE ASN PRO CYS SEQRES 1 C 16 PCA PHE GLY HIS ASP SER GLY PHE GLU VAL ARG HIS GLN SEQRES 2 C 16 LYS LEU VAL MODRES 5MYK PCA C 1 GLU MODIFIED RESIDUE HET PCA C 1 8 HETNAM PCA PYROGLUTAMIC ACID FORMUL 3 PCA C5 H7 N O3 FORMUL 4 HOH *392(H2 O) HELIX 1 AA1 GLU A 84 LEU A 88 5 5 HELIX 2 AA2 SER A 126 SER A 132 1 7 HELIX 3 AA3 LYS A 188 ARG A 193 1 6 HELIX 4 AA4 ASN A 217 CYS A 219 5 3 HELIX 5 AA5 THR B 28 TYR B 32 5 5 HELIX 6 AA6 ASN B 74 LYS B 76 5 3 HELIX 7 AA7 ARG B 87 THR B 91 5 5 HELIX 8 AA8 SER B 165 SER B 167 5 3 HELIX 9 AA9 PRO B 209 SER B 212 5 4 SHEET 1 AA1 4 MET A 4 THR A 7 0 SHEET 2 AA1 4 ALA A 19 SER A 25 -1 O ARG A 24 N THR A 5 SHEET 3 AA1 4 ASP A 75 ILE A 80 -1 O ILE A 80 N ALA A 19 SHEET 4 AA1 4 PHE A 67 SER A 72 -1 N SER A 68 O LYS A 79 SHEET 1 AA2 6 SER A 10 VAL A 13 0 SHEET 2 AA2 6 THR A 107 ILE A 111 1 O LYS A 108 N LEU A 11 SHEET 3 AA2 6 GLY A 89 GLN A 95 -1 N GLY A 89 O LEU A 109 SHEET 4 AA2 6 LEU A 38 GLN A 43 -1 N HIS A 39 O SER A 94 SHEET 5 AA2 6 LYS A 50 TYR A 54 -1 O LEU A 52 N TRP A 40 SHEET 6 AA2 6 ASN A 58 ARG A 59 -1 O ASN A 58 N TYR A 54 SHEET 1 AA3 4 SER A 10 VAL A 13 0 SHEET 2 AA3 4 THR A 107 ILE A 111 1 O LYS A 108 N LEU A 11 SHEET 3 AA3 4 GLY A 89 GLN A 95 -1 N GLY A 89 O LEU A 109 SHEET 4 AA3 4 THR A 102 PHE A 103 -1 O THR A 102 N GLN A 95 SHEET 1 AA4 4 THR A 119 PHE A 123 0 SHEET 2 AA4 4 GLY A 134 PHE A 144 -1 O ASN A 142 N THR A 119 SHEET 3 AA4 4 TYR A 178 THR A 187 -1 O MET A 180 N LEU A 141 SHEET 4 AA4 4 VAL A 164 TRP A 168 -1 N LEU A 165 O THR A 183 SHEET 1 AA5 4 SER A 158 ARG A 160 0 SHEET 2 AA5 4 ASN A 150 ILE A 155 -1 N ILE A 155 O SER A 158 SHEET 3 AA5 4 SER A 196 HIS A 203 -1 O GLU A 200 N LYS A 152 SHEET 4 AA5 4 SER A 206 ASN A 215 -1 O ILE A 210 N ALA A 201 SHEET 1 AA6 4 LYS B 3 SER B 7 0 SHEET 2 AA6 4 ARG B 18 SER B 25 -1 O SER B 25 N LYS B 3 SHEET 3 AA6 4 THR B 78 MET B 83 -1 O MET B 83 N ARG B 18 SHEET 4 AA6 4 PHE B 68 GLU B 73 -1 N THR B 69 O GLU B 82 SHEET 1 AA7 6 GLY B 10 VAL B 12 0 SHEET 2 AA7 6 THR B 116 VAL B 120 1 O THR B 119 N VAL B 12 SHEET 3 AA7 6 ALA B 92 TYR B 101 -1 N TYR B 94 O THR B 116 SHEET 4 AA7 6 MET B 34 GLN B 39 -1 N VAL B 37 O TYR B 95 SHEET 5 AA7 6 GLU B 46 ILE B 51 -1 O GLU B 46 N ARG B 38 SHEET 6 AA7 6 ILE B 58 TYR B 60 -1 O TYR B 59 N PHE B 50 SHEET 1 AA8 5 GLY B 10 VAL B 12 0 SHEET 2 AA8 5 THR B 116 VAL B 120 1 O THR B 119 N VAL B 12 SHEET 3 AA8 5 ALA B 92 TYR B 101 -1 N TYR B 94 O THR B 116 SHEET 4 AA8 5 LEU B 105 TRP B 112 -1 O VAL B 108 N ASP B 100 SHEET 5 AA8 5 PHE C 2 GLY C 3 -1 O PHE C 2 N ASP B 106 SHEET 1 AA9 4 SER B 129 LEU B 133 0 SHEET 2 AA9 4 SER B 144 TYR B 154 -1 O LEU B 150 N TYR B 131 SHEET 3 AA9 4 LEU B 183 PRO B 193 -1 O TYR B 184 N TYR B 154 SHEET 4 AA9 4 HIS B 173 GLN B 180 -1 N GLN B 180 O LEU B 183 SHEET 1 AB1 3 THR B 160 TRP B 163 0 SHEET 2 AB1 3 THR B 203 HIS B 208 -1 O SER B 205 N THR B 162 SHEET 3 AB1 3 THR B 213 LYS B 218 -1 O LYS B 217 N CYS B 204 SSBOND 1 CYS A 23 CYS A 93 1555 1555 2.08 SSBOND 2 CYS A 139 CYS A 199 1555 1555 2.07 SSBOND 3 CYS A 219 CYS B 137 1555 1555 2.04 SSBOND 4 CYS B 22 CYS B 96 1555 1555 2.03 SSBOND 5 CYS B 149 CYS B 204 1555 1555 2.03 LINK C PCA C 1 N PHE C 2 1555 1555 1.33 CISPEP 1 THR A 7 PRO A 8 0 -6.14 CISPEP 2 VAL A 99 PRO A 100 0 -3.82 CISPEP 3 TYR A 145 PRO A 146 0 1.12 CISPEP 4 PHE B 155 PRO B 156 0 -5.95 CISPEP 5 GLU B 157 SER B 158 0 1.55 CISPEP 6 TRP B 197 PRO B 198 0 6.33 CRYST1 40.915 42.943 57.979 83.85 83.34 90.30 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.024441 0.000127 -0.002883 0.00000 SCALE2 0.000000 0.023287 -0.002540 0.00000 SCALE3 0.000000 0.000000 0.017468 0.00000