HEADER OXIDOREDUCTASE 27-JAN-17 5MYP TITLE STRUCTURE OF APO-TBALDH3 COMPND MOL_ID: 1; COMPND 2 MOLECULE: ALDEHYDE DEHYDROGENASE; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: TRYPANOSOMA BRUCEI; SOURCE 3 ORGANISM_TAXID: 5691; SOURCE 4 VARIANT: 427/ MI221; SOURCE 5 GENE: TB427.06.3050; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_VARIANT: ROSETTA GAMI; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET27B MODIFIED KEYWDS ALDEHYDE DEHYDROGENASE, ALDH, TRYPANOSOMA BRUCEI, GLYCOSOMAL, KEYWDS 2 OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR M.ZOLTNER,N.ZHANG,D.HORN,M.C.FIELD REVDAT 3 01-MAY-24 5MYP 1 REMARK REVDAT 2 13-SEP-17 5MYP 1 REMARK REVDAT 1 19-APR-17 5MYP 0 JRNL AUTH N.ZHANG,M.ZOLTNER,K.F.LEUNG,P.SCULLION,S.HUTCHINSON, JRNL AUTH 2 R.CANAVATE DEL PINO,M.BARRETT,Y.FREUD,D.ALLEY,K.READ,D.HORN, JRNL AUTH 3 M.C.FIELD JRNL TITL ACTIVATION OF AN ANTI-TRYPANOSOMAL BENZOXABOROLE REQUIRES JRNL TITL 2 BOTH HOST AND PARASITE FACTORS JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.95 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0158 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.95 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 22.90 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.2 REMARK 3 NUMBER OF REFLECTIONS : 68969 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.201 REMARK 3 R VALUE (WORKING SET) : 0.200 REMARK 3 FREE R VALUE : 0.223 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.900 REMARK 3 FREE R VALUE TEST SET COUNT : 3580 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.95 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.00 REMARK 3 REFLECTION IN BIN (WORKING SET) : 4897 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 95.96 REMARK 3 BIN R VALUE (WORKING SET) : 0.2370 REMARK 3 BIN FREE R VALUE SET COUNT : 251 REMARK 3 BIN FREE R VALUE : 0.2930 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 7530 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 12 REMARK 3 SOLVENT ATOMS : 490 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 14.80 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 19.02 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 1.07000 REMARK 3 B22 (A**2) : -0.12000 REMARK 3 B33 (A**2) : -0.62000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -0.99000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.194 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.155 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.104 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 3.616 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.936 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.923 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 8092 ; 0.007 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 7854 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 11006 ; 1.099 ; 1.978 REMARK 3 BOND ANGLES OTHERS (DEGREES): 18227 ; 0.865 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 1050 ; 5.440 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 342 ;32.542 ;23.626 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 1473 ;12.072 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 67 ;14.415 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 1262 ; 0.059 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 9099 ; 0.004 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 1604 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 4086 ; 0.530 ; 1.855 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 4085 ; 0.530 ; 1.854 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 5174 ; 0.932 ; 2.778 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 5175 ; 0.932 ; 2.779 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 4006 ; 0.558 ; 1.968 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 4006 ; 0.558 ; 1.968 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 5833 ; 0.969 ; 2.909 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 9076 ; 2.507 ;22.460 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 8958 ; 2.349 ;22.307 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NCS TYPE: LOCAL REMARK 3 NUMBER OF DIFFERENT NCS PAIRS : 1 REMARK 3 GROUP CHAIN1 RANGE CHAIN2 RANGE COUNT RMS WEIGHT REMARK 3 1 A 6 490 B 6 490 32090 0.07 0.05 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 5MYP COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 27-JAN-17. REMARK 100 THE DEPOSITION ID IS D_1200003140. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 16-JUL-15 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU MICROMAX-007 HF REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.54178 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : VARIMAX VHF REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RIGAKU SATURN 944+ REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS 6.5.013 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 72557 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.950 REMARK 200 RESOLUTION RANGE LOW (A) : 90.700 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 200 DATA REDUNDANCY : 4.900 REMARK 200 R MERGE (I) : 0.09900 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 10.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.95 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.00 REMARK 200 COMPLETENESS FOR SHELL (%) : 95.9 REMARK 200 DATA REDUNDANCY IN SHELL : 3.50 REMARK 200 R MERGE FOR SHELL (I) : 0.21300 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 3.800 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER 6.5.013 REMARK 200 STARTING MODEL: HOMOLOGY MODEL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 42.20 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.13 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 100 MM BIS-TRIS PH 5.5, 0.2 M LISO4, REMARK 280 25% PEG3350, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 293.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 31.97500 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 9520 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 36560 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -29.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 1 REMARK 465 SER A 2 REMARK 465 MET A 3 REMARK 465 ALA A 4 REMARK 465 PRO A 5 REMARK 465 PRO A 491 REMARK 465 SER A 492 REMARK 465 ALA A 493 REMARK 465 GLU A 494 REMARK 465 VAL A 495 REMARK 465 ALA A 496 REMARK 465 GLY A 497 REMARK 465 ALA A 498 REMARK 465 VAL A 499 REMARK 465 GLY A 500 REMARK 465 ARG A 501 REMARK 465 SER A 502 REMARK 465 VAL A 503 REMARK 465 TRP A 504 REMARK 465 GLY A 505 REMARK 465 VAL A 506 REMARK 465 ALA A 507 REMARK 465 ALA A 508 REMARK 465 LEU A 509 REMARK 465 ALA A 510 REMARK 465 ARG A 511 REMARK 465 VAL A 512 REMARK 465 VAL A 513 REMARK 465 GLU A 514 REMARK 465 VAL A 515 REMARK 465 GLY A 516 REMARK 465 TYR A 517 REMARK 465 HIS A 518 REMARK 465 TYR A 519 REMARK 465 MET A 520 REMARK 465 ARG A 521 REMARK 465 PHE A 522 REMARK 465 LEU A 523 REMARK 465 MET A 524 REMARK 465 ALA A 525 REMARK 465 GLY A 526 REMARK 465 GLU A 527 REMARK 465 THR A 528 REMARK 465 THR A 529 REMARK 465 PRO A 530 REMARK 465 ALA A 531 REMARK 465 PRO A 532 REMARK 465 SER A 533 REMARK 465 SER A 534 REMARK 465 SER A 535 REMARK 465 GLU A 536 REMARK 465 PRO A 537 REMARK 465 PHE A 538 REMARK 465 SER A 539 REMARK 465 LYS A 540 REMARK 465 SER A 541 REMARK 465 PRO A 542 REMARK 465 ARG A 543 REMARK 465 SER A 544 REMARK 465 ASN A 545 REMARK 465 GLU A 546 REMARK 465 GLY B 1 REMARK 465 SER B 2 REMARK 465 MET B 3 REMARK 465 ALA B 4 REMARK 465 PRO B 5 REMARK 465 PRO B 491 REMARK 465 SER B 492 REMARK 465 ALA B 493 REMARK 465 GLU B 494 REMARK 465 VAL B 495 REMARK 465 ALA B 496 REMARK 465 GLY B 497 REMARK 465 ALA B 498 REMARK 465 VAL B 499 REMARK 465 GLY B 500 REMARK 465 ARG B 501 REMARK 465 SER B 502 REMARK 465 VAL B 503 REMARK 465 TRP B 504 REMARK 465 GLY B 505 REMARK 465 VAL B 506 REMARK 465 ALA B 507 REMARK 465 ALA B 508 REMARK 465 LEU B 509 REMARK 465 ALA B 510 REMARK 465 ARG B 511 REMARK 465 VAL B 512 REMARK 465 VAL B 513 REMARK 465 GLU B 514 REMARK 465 VAL B 515 REMARK 465 GLY B 516 REMARK 465 TYR B 517 REMARK 465 HIS B 518 REMARK 465 TYR B 519 REMARK 465 MET B 520 REMARK 465 ARG B 521 REMARK 465 PHE B 522 REMARK 465 LEU B 523 REMARK 465 MET B 524 REMARK 465 ALA B 525 REMARK 465 GLY B 526 REMARK 465 GLU B 527 REMARK 465 THR B 528 REMARK 465 THR B 529 REMARK 465 PRO B 530 REMARK 465 ALA B 531 REMARK 465 PRO B 532 REMARK 465 SER B 533 REMARK 465 SER B 534 REMARK 465 SER B 535 REMARK 465 GLU B 536 REMARK 465 PRO B 537 REMARK 465 PHE B 538 REMARK 465 SER B 539 REMARK 465 LYS B 540 REMARK 465 SER B 541 REMARK 465 PRO B 542 REMARK 465 ARG B 543 REMARK 465 SER B 544 REMARK 465 ASN B 545 REMARK 465 GLU B 546 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU A 76 -53.75 -124.28 REMARK 500 LEU A 224 -153.83 -117.38 REMARK 500 VAL A 423 -39.45 72.17 REMARK 500 HIS A 445 121.78 99.03 REMARK 500 GLU B 76 -53.90 -124.29 REMARK 500 LEU B 224 -154.21 -117.40 REMARK 500 VAL B 423 -39.36 71.99 REMARK 500 HIS B 445 121.82 99.20 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 601 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 602 DBREF 5MYP A 5 546 UNP Q583M9 Q583M9_TRYB2 2 543 DBREF 5MYP B 5 546 UNP Q583M9 Q583M9_TRYB2 2 543 SEQADV 5MYP GLY A 1 UNP Q583M9 EXPRESSION TAG SEQADV 5MYP SER A 2 UNP Q583M9 EXPRESSION TAG SEQADV 5MYP MET A 3 UNP Q583M9 EXPRESSION TAG SEQADV 5MYP ALA A 4 UNP Q583M9 EXPRESSION TAG SEQADV 5MYP VAL A 19 UNP Q583M9 THR 16 CONFLICT SEQADV 5MYP ASP A 30 UNP Q583M9 ASN 27 CONFLICT SEQADV 5MYP THR A 235 UNP Q583M9 SER 232 CONFLICT SEQADV 5MYP GLN A 323 UNP Q583M9 HIS 320 CONFLICT SEQADV 5MYP ASN A 354 UNP Q583M9 ASP 351 CONFLICT SEQADV 5MYP LEU A 465 UNP Q583M9 PHE 462 CONFLICT SEQADV 5MYP SER A 541 UNP Q583M9 GLY 538 CONFLICT SEQADV 5MYP GLY B 1 UNP Q583M9 EXPRESSION TAG SEQADV 5MYP SER B 2 UNP Q583M9 EXPRESSION TAG SEQADV 5MYP MET B 3 UNP Q583M9 EXPRESSION TAG SEQADV 5MYP ALA B 4 UNP Q583M9 EXPRESSION TAG SEQADV 5MYP VAL B 19 UNP Q583M9 THR 16 CONFLICT SEQADV 5MYP ASP B 30 UNP Q583M9 ASN 27 CONFLICT SEQADV 5MYP THR B 235 UNP Q583M9 SER 232 CONFLICT SEQADV 5MYP GLN B 323 UNP Q583M9 HIS 320 CONFLICT SEQADV 5MYP ASN B 354 UNP Q583M9 ASP 351 CONFLICT SEQADV 5MYP LEU B 465 UNP Q583M9 PHE 462 CONFLICT SEQADV 5MYP SER B 541 UNP Q583M9 GLY 538 CONFLICT SEQRES 1 A 546 GLY SER MET ALA PRO ALA GLY VAL PRO GLU ASN THR SER SEQRES 2 A 546 LEU GLU ASN ILE PRO VAL ILE VAL SER LYS CYS ARG GLU SEQRES 3 A 546 ALA PHE ASN ASP ASP ALA ASN ARG ASP LEU LYS LYS ARG SEQRES 4 A 546 LYS GLN VAL LEU ARG SER LEU LEU ASN LEU VAL GLU GLU SEQRES 5 A 546 ASN THR ASP GLU PHE CYS LYS ALA ILE HIS ARG ASP ARG SEQRES 6 A 546 ARG ARG HIS ARG ASP GLU THR VAL VAL MET GLU ILE LEU SEQRES 7 A 546 PRO LEU ARG ASN GLU VAL TRP HIS LEU ILE GLU HIS MET SEQRES 8 A 546 ASP GLU TYR VAL LYS PRO VAL LYS PRO THR MET GLU GLY SEQRES 9 A 546 ALA ALA ALA LEU ASP ASP CYS GLU LEU GLN TYR GLU PRO SEQRES 10 A 546 LEU GLY VAL VAL LEU VAL ILE GLY THR TRP ASN TYR PRO SEQRES 11 A 546 LEU LEU LEU ILE LEU GLN PRO LEU LEU GLY ALA LEU ALA SEQRES 12 A 546 ALA GLY ASN THR ALA VAL ILE LYS PRO SER GLU LEU ALA SEQRES 13 A 546 PRO ALA THR ALA GLU LEU LEU THR LYS LEU LEU PRO LYS SEQRES 14 A 546 TYR VAL SER SER ASP VAL VAL GLY ILE VAL ASN GLY GLY SEQRES 15 A 546 VAL SER GLU THR THR ALA VAL LEU LYS GLU ARG PHE ASP SEQRES 16 A 546 HIS ILE LEU TYR THR GLY SER ALA ARG VAL ALA GLU ILE SEQRES 17 A 546 VAL MET ALA ALA ALA ALA LYS HIS LEU THR PRO VAL THR SEQRES 18 A 546 LEU GLU LEU GLY GLY LYS SER PRO VAL VAL VAL ASP ASP SEQRES 19 A 546 THR CYS ALA ASP ASN MET LYS VAL VAL ALA GLU ARG ILE SEQRES 20 A 546 MET TRP GLY LYS ILE ILE ASN ALA GLY GLN THR CYS ILE SEQRES 21 A 546 ALA PRO ASP TYR VAL VAL VAL GLU LYS SER MET GLU SER SEQRES 22 A 546 VAL LEU VAL ASP ALA LEU ALA GLU ALA ARG LYS ALA MET SEQRES 23 A 546 LEU GLY ASP LYS PHE LEU LYS VAL LEU LYS GLY GLU LEU SEQRES 24 A 546 LEU VAL LYS GLN LYS GLN GLN PHE LEU GLU GLU SER ASP SEQRES 25 A 546 TYR PRO ARG ILE VAL ASN ALA SER HIS PHE GLN ARG LEU SEQRES 26 A 546 MET GLU PHE MET LYS GLY GLY LYS VAL ALA VAL GLY GLY SEQRES 27 A 546 GLU ALA ASP GLU ALA THR LEU THR ILE ALA PRO THR ILE SEQRES 28 A 546 LEU THR ASN ILE ASP PRO THR HIS PRO VAL MET GLN GLU SEQRES 29 A 546 GLU ILE PHE GLY PRO ILE LEU PRO VAL LEU THR TYR GLU SEQRES 30 A 546 ASN GLU LYS ASP ILE LEU LYS ILE ILE ASN SER ARG GLU SEQRES 31 A 546 LYS PRO LEU ALA LEU TYR VAL PHE SER ASN ASN LYS ARG SEQRES 32 A 546 PHE ILE ARG GLY VAL GLU SER ARG THR SER SER GLY ALA SEQRES 33 A 546 VAL VAL VAL ASN ASP VAL VAL VAL HIS ALA GLY ALA ASP SEQRES 34 A 546 GLY LEU PRO PHE GLY GLY VAL GLY ARG SER GLY MET GLY SEQRES 35 A 546 ALA TYR HIS GLY ARG TYR SER PHE GLU THR PHE SER HIS SEQRES 36 A 546 ARG ARG PRO VAL MET ARG ARG GLY PHE LEU PHE SER SER SEQRES 37 A 546 ILE ASP THR VAL ARG PHE PRO PRO TYR THR THR ALA LYS SEQRES 38 A 546 SER ARG VAL LEU ASN SER LEU LEU LYS PRO SER ALA GLU SEQRES 39 A 546 VAL ALA GLY ALA VAL GLY ARG SER VAL TRP GLY VAL ALA SEQRES 40 A 546 ALA LEU ALA ARG VAL VAL GLU VAL GLY TYR HIS TYR MET SEQRES 41 A 546 ARG PHE LEU MET ALA GLY GLU THR THR PRO ALA PRO SER SEQRES 42 A 546 SER SER GLU PRO PHE SER LYS SER PRO ARG SER ASN GLU SEQRES 1 B 546 GLY SER MET ALA PRO ALA GLY VAL PRO GLU ASN THR SER SEQRES 2 B 546 LEU GLU ASN ILE PRO VAL ILE VAL SER LYS CYS ARG GLU SEQRES 3 B 546 ALA PHE ASN ASP ASP ALA ASN ARG ASP LEU LYS LYS ARG SEQRES 4 B 546 LYS GLN VAL LEU ARG SER LEU LEU ASN LEU VAL GLU GLU SEQRES 5 B 546 ASN THR ASP GLU PHE CYS LYS ALA ILE HIS ARG ASP ARG SEQRES 6 B 546 ARG ARG HIS ARG ASP GLU THR VAL VAL MET GLU ILE LEU SEQRES 7 B 546 PRO LEU ARG ASN GLU VAL TRP HIS LEU ILE GLU HIS MET SEQRES 8 B 546 ASP GLU TYR VAL LYS PRO VAL LYS PRO THR MET GLU GLY SEQRES 9 B 546 ALA ALA ALA LEU ASP ASP CYS GLU LEU GLN TYR GLU PRO SEQRES 10 B 546 LEU GLY VAL VAL LEU VAL ILE GLY THR TRP ASN TYR PRO SEQRES 11 B 546 LEU LEU LEU ILE LEU GLN PRO LEU LEU GLY ALA LEU ALA SEQRES 12 B 546 ALA GLY ASN THR ALA VAL ILE LYS PRO SER GLU LEU ALA SEQRES 13 B 546 PRO ALA THR ALA GLU LEU LEU THR LYS LEU LEU PRO LYS SEQRES 14 B 546 TYR VAL SER SER ASP VAL VAL GLY ILE VAL ASN GLY GLY SEQRES 15 B 546 VAL SER GLU THR THR ALA VAL LEU LYS GLU ARG PHE ASP SEQRES 16 B 546 HIS ILE LEU TYR THR GLY SER ALA ARG VAL ALA GLU ILE SEQRES 17 B 546 VAL MET ALA ALA ALA ALA LYS HIS LEU THR PRO VAL THR SEQRES 18 B 546 LEU GLU LEU GLY GLY LYS SER PRO VAL VAL VAL ASP ASP SEQRES 19 B 546 THR CYS ALA ASP ASN MET LYS VAL VAL ALA GLU ARG ILE SEQRES 20 B 546 MET TRP GLY LYS ILE ILE ASN ALA GLY GLN THR CYS ILE SEQRES 21 B 546 ALA PRO ASP TYR VAL VAL VAL GLU LYS SER MET GLU SER SEQRES 22 B 546 VAL LEU VAL ASP ALA LEU ALA GLU ALA ARG LYS ALA MET SEQRES 23 B 546 LEU GLY ASP LYS PHE LEU LYS VAL LEU LYS GLY GLU LEU SEQRES 24 B 546 LEU VAL LYS GLN LYS GLN GLN PHE LEU GLU GLU SER ASP SEQRES 25 B 546 TYR PRO ARG ILE VAL ASN ALA SER HIS PHE GLN ARG LEU SEQRES 26 B 546 MET GLU PHE MET LYS GLY GLY LYS VAL ALA VAL GLY GLY SEQRES 27 B 546 GLU ALA ASP GLU ALA THR LEU THR ILE ALA PRO THR ILE SEQRES 28 B 546 LEU THR ASN ILE ASP PRO THR HIS PRO VAL MET GLN GLU SEQRES 29 B 546 GLU ILE PHE GLY PRO ILE LEU PRO VAL LEU THR TYR GLU SEQRES 30 B 546 ASN GLU LYS ASP ILE LEU LYS ILE ILE ASN SER ARG GLU SEQRES 31 B 546 LYS PRO LEU ALA LEU TYR VAL PHE SER ASN ASN LYS ARG SEQRES 32 B 546 PHE ILE ARG GLY VAL GLU SER ARG THR SER SER GLY ALA SEQRES 33 B 546 VAL VAL VAL ASN ASP VAL VAL VAL HIS ALA GLY ALA ASP SEQRES 34 B 546 GLY LEU PRO PHE GLY GLY VAL GLY ARG SER GLY MET GLY SEQRES 35 B 546 ALA TYR HIS GLY ARG TYR SER PHE GLU THR PHE SER HIS SEQRES 36 B 546 ARG ARG PRO VAL MET ARG ARG GLY PHE LEU PHE SER SER SEQRES 37 B 546 ILE ASP THR VAL ARG PHE PRO PRO TYR THR THR ALA LYS SEQRES 38 B 546 SER ARG VAL LEU ASN SER LEU LEU LYS PRO SER ALA GLU SEQRES 39 B 546 VAL ALA GLY ALA VAL GLY ARG SER VAL TRP GLY VAL ALA SEQRES 40 B 546 ALA LEU ALA ARG VAL VAL GLU VAL GLY TYR HIS TYR MET SEQRES 41 B 546 ARG PHE LEU MET ALA GLY GLU THR THR PRO ALA PRO SER SEQRES 42 B 546 SER SER GLU PRO PHE SER LYS SER PRO ARG SER ASN GLU HET GOL A 601 6 HET GOL A 602 6 HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 3 GOL 2(C3 H8 O3) FORMUL 5 HOH *490(H2 O) HELIX 1 AA1 GLU A 15 ASP A 30 1 16 HELIX 2 AA2 ASP A 35 ASN A 53 1 19 HELIX 3 AA3 ASN A 53 ARG A 66 1 14 HELIX 4 AA4 HIS A 68 GLU A 76 1 9 HELIX 5 AA5 GLU A 76 LYS A 96 1 21 HELIX 6 AA6 GLU A 103 ASP A 109 5 7 HELIX 7 AA7 LEU A 131 ALA A 144 1 14 HELIX 8 AA8 ALA A 156 VAL A 171 1 16 HELIX 9 AA9 GLY A 182 GLU A 192 1 11 HELIX 10 AB1 SER A 202 LYS A 215 1 14 HELIX 11 AB2 CYS A 236 ASP A 238 5 3 HELIX 12 AB3 ASN A 239 ILE A 253 1 15 HELIX 13 AB4 ASN A 254 GLN A 257 5 4 HELIX 14 AB5 MET A 271 GLY A 288 1 18 HELIX 15 AB6 GLY A 288 GLY A 297 1 10 HELIX 16 AB7 GLN A 303 GLU A 310 1 8 HELIX 17 AB8 ASN A 318 MET A 329 1 12 HELIX 18 AB9 LYS A 330 GLY A 332 5 3 HELIX 19 AC1 HIS A 359 GLN A 363 5 5 HELIX 20 AC2 ASN A 378 SER A 388 1 11 HELIX 21 AC3 ASN A 401 THR A 412 1 12 HELIX 22 AC4 VAL A 423 ALA A 428 5 6 HELIX 23 AC5 VAL A 436 ARG A 438 5 3 HELIX 24 AC6 GLY A 446 PHE A 453 1 8 HELIX 25 AC7 SER A 467 VAL A 472 5 6 HELIX 26 AC8 THR A 478 LYS A 490 1 13 HELIX 27 AC9 GLU B 15 ASP B 30 1 16 HELIX 28 AD1 ASP B 35 ASN B 53 1 19 HELIX 29 AD2 ASN B 53 ARG B 66 1 14 HELIX 30 AD3 HIS B 68 GLU B 76 1 9 HELIX 31 AD4 GLU B 76 LYS B 96 1 21 HELIX 32 AD5 GLU B 103 ASP B 109 5 7 HELIX 33 AD6 LEU B 131 ALA B 144 1 14 HELIX 34 AD7 ALA B 156 VAL B 171 1 16 HELIX 35 AD8 GLY B 182 GLU B 192 1 11 HELIX 36 AD9 SER B 202 LYS B 215 1 14 HELIX 37 AE1 CYS B 236 ASP B 238 5 3 HELIX 38 AE2 ASN B 239 ILE B 253 1 15 HELIX 39 AE3 ASN B 254 GLN B 257 5 4 HELIX 40 AE4 MET B 271 GLY B 288 1 18 HELIX 41 AE5 GLY B 288 GLY B 297 1 10 HELIX 42 AE6 GLN B 303 GLU B 310 1 8 HELIX 43 AE7 ASN B 318 MET B 329 1 12 HELIX 44 AE8 LYS B 330 GLY B 332 5 3 HELIX 45 AE9 HIS B 359 GLN B 363 5 5 HELIX 46 AF1 ASN B 378 SER B 388 1 11 HELIX 47 AF2 ASN B 401 THR B 412 1 12 HELIX 48 AF3 VAL B 423 ALA B 428 5 6 HELIX 49 AF4 VAL B 436 ARG B 438 5 3 HELIX 50 AF5 GLY B 446 PHE B 453 1 8 HELIX 51 AF6 SER B 467 VAL B 472 5 6 HELIX 52 AF7 THR B 478 LEU B 489 1 12 SHEET 1 AA1 9 ASP A 110 PRO A 117 0 SHEET 2 AA1 9 SER A 454 ARG A 461 -1 O ARG A 457 N GLN A 114 SHEET 3 AA1 9 VAL B 417 VAL B 419 1 O VAL B 419 N MET A 460 SHEET 4 AA1 9 LEU B 395 PHE B 398 1 N LEU B 395 O VAL B 418 SHEET 5 AA1 9 PRO B 229 VAL B 232 1 N VAL B 231 O PHE B 398 SHEET 6 AA1 9 TYR B 264 GLU B 268 1 O VAL B 266 N VAL B 230 SHEET 7 AA1 9 ILE B 370 TYR B 376 1 O LEU B 374 N VAL B 265 SHEET 8 AA1 9 THR B 350 THR B 353 1 N THR B 350 O LEU B 371 SHEET 9 AA1 9 LYS B 333 VAL B 336 -1 N LYS B 333 O THR B 353 SHEET 1 AA2 6 VAL A 176 ILE A 178 0 SHEET 2 AA2 6 THR A 147 LYS A 151 1 N ILE A 150 O GLY A 177 SHEET 3 AA2 6 VAL A 120 ILE A 124 1 N VAL A 123 O VAL A 149 SHEET 4 AA2 6 HIS A 196 THR A 200 1 O LEU A 198 N LEU A 122 SHEET 5 AA2 6 VAL A 220 GLU A 223 1 O GLU A 223 N TYR A 199 SHEET 6 AA2 6 GLY A 440 MET A 441 -1 O MET A 441 N LEU A 222 SHEET 1 AA3 9 LYS A 333 VAL A 336 0 SHEET 2 AA3 9 THR A 350 THR A 353 -1 O THR A 353 N LYS A 333 SHEET 3 AA3 9 ILE A 370 TYR A 376 1 O LEU A 371 N THR A 350 SHEET 4 AA3 9 TYR A 264 GLU A 268 1 N VAL A 265 O LEU A 374 SHEET 5 AA3 9 PRO A 229 VAL A 232 1 N VAL A 230 O VAL A 266 SHEET 6 AA3 9 LEU A 395 PHE A 398 1 O PHE A 398 N VAL A 231 SHEET 7 AA3 9 VAL A 417 VAL A 419 1 O VAL A 418 N LEU A 395 SHEET 8 AA3 9 SER B 454 ARG B 461 1 O MET B 460 N VAL A 419 SHEET 9 AA3 9 ASP B 110 PRO B 117 -1 N GLN B 114 O ARG B 457 SHEET 1 AA4 2 ALA A 340 ASP A 341 0 SHEET 2 AA4 2 THR A 346 ILE A 347 -1 O THR A 346 N ASP A 341 SHEET 1 AA5 6 VAL B 176 ILE B 178 0 SHEET 2 AA5 6 THR B 147 LYS B 151 1 N ILE B 150 O GLY B 177 SHEET 3 AA5 6 VAL B 120 ILE B 124 1 N VAL B 123 O VAL B 149 SHEET 4 AA5 6 HIS B 196 THR B 200 1 O LEU B 198 N LEU B 122 SHEET 5 AA5 6 VAL B 220 GLU B 223 1 O GLU B 223 N TYR B 199 SHEET 6 AA5 6 GLY B 440 MET B 441 -1 O MET B 441 N LEU B 222 SHEET 1 AA6 2 ALA B 340 ASP B 341 0 SHEET 2 AA6 2 THR B 346 ILE B 347 -1 O THR B 346 N ASP B 341 CISPEP 1 PRO A 475 PRO A 476 0 6.29 CISPEP 2 PRO B 475 PRO B 476 0 5.40 SITE 1 AC1 5 PRO A 219 VAL A 220 MET A 441 PRO B 219 SITE 2 AC1 5 VAL B 220 SITE 1 AC2 4 SER A 202 ARG A 204 HOH A 869 HOH A 896 CRYST1 87.717 63.950 91.746 90.00 98.64 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011400 0.000000 0.001732 0.00000 SCALE2 0.000000 0.015637 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011025 0.00000