HEADER UNKNOWN FUNCTION 31-JAN-17 5MZB OBSLTE 10-APR-19 5MZB 6R3T TITLE STRUCTURE OF P110 FROM MYCOPLASMA GENITALIUM AT 2.7A COMPND MOL_ID: 1; COMPND 2 MOLECULE: MGP-OPERON PROTEIN 3; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: MGP3,ORF-3 PROTEIN; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MYCOPLASMA GENITALIUM (STRAIN ATCC 33530 / G-37 SOURCE 3 / NCTC 10195); SOURCE 4 ORGANISM_TAXID: 243273; SOURCE 5 STRAIN: ATCC 33530 / G-37 / NCTC 10195; SOURCE 6 GENE: MG192; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_TAXID: 469008 KEYWDS UNKNOWN FUNCTION EXPDTA X-RAY DIFFRACTION AUTHOR D.APARICIO,I.FITA REVDAT 4 10-APR-19 5MZB 1 OBSLTE REVDAT 3 07-NOV-18 5MZB 1 COMPND JRNL REVDAT 2 17-OCT-18 5MZB 1 TITLE COMPND REVDAT 1 12-SEP-18 5MZB 0 JRNL AUTH D.APARICIO,S.TORRES-PUIG,M.RATERA,E.QUEROL,J.PINOL,O.Q.PICH, JRNL AUTH 2 I.FITA JRNL TITL MYCOPLASMA GENITALIUM ADHESIN P110 BINDS SIALIC-ACID HUMAN JRNL TITL 2 RECEPTORS. JRNL REF NAT COMMUN V. 9 4471 2018 JRNL REFN ESSN 2041-1723 JRNL PMID 30367053 JRNL DOI 10.1038/S41467-018-06963-Y REMARK 2 REMARK 2 RESOLUTION. 2.73 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0158 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.73 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 58.95 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 98.6 REMARK 3 NUMBER OF REFLECTIONS : 36543 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.187 REMARK 3 R VALUE (WORKING SET) : 0.185 REMARK 3 FREE R VALUE : 0.229 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1930 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.73 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.80 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2622 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 98.65 REMARK 3 BIN R VALUE (WORKING SET) : 0.3150 REMARK 3 BIN FREE R VALUE SET COUNT : 164 REMARK 3 BIN FREE R VALUE : 0.3610 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 6815 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 5 REMARK 3 SOLVENT ATOMS : 24 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 96.05 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -7.28000 REMARK 3 B22 (A**2) : 3.40000 REMARK 3 B33 (A**2) : 3.88000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.446 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.277 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.261 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 29.858 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.958 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.938 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 6964 ; 0.022 ; 0.020 REMARK 3 BOND LENGTHS OTHERS (A): 6141 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 9471 ; 2.123 ; 1.941 REMARK 3 BOND ANGLES OTHERS (DEGREES): 14370 ; 1.189 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 884 ; 6.119 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 317 ;45.825 ;25.962 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 1134 ;17.824 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 18 ;12.131 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 1077 ; 0.122 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 7845 ; 0.009 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 1341 ; 0.002 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 3548 ; 3.606 ; 5.063 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 3547 ; 3.606 ; 5.062 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 4428 ; 5.578 ; 7.591 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 4429 ; 5.578 ; 7.593 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 3416 ; 4.123 ; 5.307 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 3413 ; 4.045 ; 5.302 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 5038 ; 6.223 ; 7.816 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 28860 ; 9.846 ;96.395 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 28858 ; 9.846 ;96.392 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 25 A 936 REMARK 3 ORIGIN FOR THE GROUP (A): 8.9514 184.6683 49.4203 REMARK 3 T TENSOR REMARK 3 T11: 0.1895 T22: 0.3462 REMARK 3 T33: 0.4949 T12: -0.1320 REMARK 3 T13: -0.0820 T23: 0.3704 REMARK 3 L TENSOR REMARK 3 L11: 1.0525 L22: 2.4208 REMARK 3 L33: 2.0221 L12: -0.4576 REMARK 3 L13: 0.1677 L23: -1.5679 REMARK 3 S TENSOR REMARK 3 S11: -0.0941 S12: 0.5115 S13: 0.5397 REMARK 3 S21: -0.1786 S22: -0.0670 S23: -0.2814 REMARK 3 S31: 0.0103 S32: -0.0689 S33: 0.1611 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 5MZB COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 31-JAN-17. REMARK 100 THE DEPOSITION ID IS D_1200003303. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 10-MAR-16 REMARK 200 TEMPERATURE (KELVIN) : 293 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALBA REMARK 200 BEAMLINE : XALOC REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.12712 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XIA2 REMARK 200 DATA SCALING SOFTWARE : XIA2 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 39641 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.700 REMARK 200 RESOLUTION RANGE LOW (A) : 62.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.9 REMARK 200 DATA REDUNDANCY : 4.600 REMARK 200 R MERGE (I) : 0.04700 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 19.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.70 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.77 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : 4.80 REMARK 200 R MERGE FOR SHELL (I) : 0.65600 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.800 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 65.88 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.60 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 11% PEG 8000 0.1M IMIDAZOLE PH 8 0.2M REMARK 280 CALCIUM ACETATE, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 2 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X,Y,-Z REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z+1/2 REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 54.80000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 76.47000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 86.35500 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 54.80000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 76.47000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 86.35500 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 54.80000 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 76.47000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 86.35500 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 54.80000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 76.47000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 86.35500 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 190 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 34880 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -7.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A1122 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ALA A 23 REMARK 465 LEU A 24 REMARK 465 GLY A 257 REMARK 465 SER A 413 REMARK 465 SER A 414 REMARK 465 SER A 415 REMARK 465 SER A 416 REMARK 465 PRO A 468 REMARK 465 TYR A 469 REMARK 465 SER A 470 REMARK 465 GLY A 471 REMARK 465 ASN A 472 REMARK 465 HIS A 473 REMARK 465 THR A 474 REMARK 465 ASN A 475 REMARK 465 ASN A 476 REMARK 465 GLY A 477 REMARK 465 GLY A 593 REMARK 465 PHE A 594 REMARK 465 LYS A 595 REMARK 465 ARG A 596 REMARK 465 PRO A 597 REMARK 465 GLU A 598 REMARK 465 ASN A 599 REMARK 465 ARG A 600 REMARK 465 GLY A 601 REMARK 465 ALA A 602 REMARK 465 PRO A 937 REMARK 465 ALA A 938 REMARK 465 HIS A 939 REMARK 465 HIS A 940 REMARK 465 HIS A 941 REMARK 465 HIS A 942 REMARK 465 HIS A 943 REMARK 465 HIS A 944 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 THR A 479 CB OG1 CG2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLU A 32 CD GLU A 32 OE2 0.070 REMARK 500 GLU A 113 CD GLU A 113 OE1 0.073 REMARK 500 ASP A 346 CB ASP A 346 CG 0.167 REMARK 500 GLU A 700 CD GLU A 700 OE1 0.070 REMARK 500 GLU A 706 CG GLU A 706 CD 0.134 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP A 346 OD1 - CG - OD2 ANGL. DEV. = -12.4 DEGREES REMARK 500 ASP A 346 CB - CG - OD1 ANGL. DEV. = 6.4 DEGREES REMARK 500 ASP A 346 CB - CG - OD2 ANGL. DEV. = 6.0 DEGREES REMARK 500 ASP A 389 CB - CG - OD1 ANGL. DEV. = 6.0 DEGREES REMARK 500 PRO A 535 CA - N - CD ANGL. DEV. = -13.4 DEGREES REMARK 500 GLU A 706 OE1 - CD - OE2 ANGL. DEV. = -8.8 DEGREES REMARK 500 ASP A 845 CB - CG - OD1 ANGL. DEV. = -8.1 DEGREES REMARK 500 ASP A 845 CB - CG - OD2 ANGL. DEV. = 6.2 DEGREES REMARK 500 ASP A 906 CB - CG - OD1 ANGL. DEV. = 5.7 DEGREES REMARK 500 ASP A 906 CB - CG - OD2 ANGL. DEV. = -5.8 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 73 -120.69 49.89 REMARK 500 ASP A 100 96.74 -68.42 REMARK 500 SER A 103 -160.54 65.15 REMARK 500 LYS A 156 -35.38 -38.60 REMARK 500 LEU A 176 -63.96 -100.22 REMARK 500 GLN A 180 -122.88 25.54 REMARK 500 ALA A 181 -12.94 -148.71 REMARK 500 ASN A 195 13.64 57.46 REMARK 500 ASP A 236 80.79 -69.12 REMARK 500 THR A 243 -56.56 -127.92 REMARK 500 SER A 260 -19.94 67.28 REMARK 500 SER A 261 -65.47 56.99 REMARK 500 SER A 262 101.84 46.96 REMARK 500 ASP A 284 -84.02 60.53 REMARK 500 GLU A 364 -53.28 66.27 REMARK 500 THR A 365 70.50 33.43 REMARK 500 SER A 367 -110.59 7.26 REMARK 500 THR A 368 -44.30 173.07 REMARK 500 GLN A 380 117.30 -39.17 REMARK 500 SER A 411 77.17 48.17 REMARK 500 SER A 418 116.83 63.51 REMARK 500 ILE A 453 -24.27 -158.32 REMARK 500 ILE A 459 86.87 158.98 REMARK 500 ASP A 461 105.48 -5.14 REMARK 500 PHE A 465 -114.03 40.65 REMARK 500 VAL A 466 -81.05 -141.18 REMARK 500 SER A 529 -142.52 -157.27 REMARK 500 ASN A 530 43.78 -93.85 REMARK 500 GLN A 531 -108.04 65.49 REMARK 500 GLU A 532 120.84 90.20 REMARK 500 THR A 538 -32.06 -140.86 REMARK 500 ASN A 572 46.30 -82.30 REMARK 500 ALA A 591 -76.05 63.14 REMARK 500 ASP A 731 41.49 -81.99 REMARK 500 ALA A 752 -40.20 178.99 REMARK 500 LEU A 763 119.65 -161.09 REMARK 500 SER A 794 -86.18 -160.30 REMARK 500 ASP A 795 41.54 -158.56 REMARK 500 ASN A 797 95.12 63.44 REMARK 500 VAL A 835 79.08 -103.43 REMARK 500 THR A 889 119.62 -160.96 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PO4 A 1001 DBREF 5MZB A 23 938 UNP P22747 MGP3_MYCGE 23 938 SEQADV 5MZB HIS A 939 UNP P22747 EXPRESSION TAG SEQADV 5MZB HIS A 940 UNP P22747 EXPRESSION TAG SEQADV 5MZB HIS A 941 UNP P22747 EXPRESSION TAG SEQADV 5MZB HIS A 942 UNP P22747 EXPRESSION TAG SEQADV 5MZB HIS A 943 UNP P22747 EXPRESSION TAG SEQADV 5MZB HIS A 944 UNP P22747 EXPRESSION TAG SEQRES 1 A 922 ALA LEU ALA ASN THR PHE LEU VAL LYS GLU ASP SER LYS SEQRES 2 A 922 ASN VAL THR ALA TYR THR PRO PHE ALA THR PRO ILE THR SEQRES 3 A 922 ASP SER LYS SER ASP LEU VAL SER LEU ALA GLN LEU ASP SEQRES 4 A 922 SER SER TYR GLN ILE ALA ASP GLN THR ILE HIS ASN THR SEQRES 5 A 922 ASN LEU PHE VAL LEU PHE LYS SER ARG ASP VAL LYS VAL SEQRES 6 A 922 LYS TYR GLU SER SER GLY SER ASN ASN ILE SER PHE ASP SEQRES 7 A 922 SER THR SER GLN GLY GLU LYS PRO SER TYR VAL VAL GLU SEQRES 8 A 922 PHE THR ASN SER THR ASN ILE GLY ILE LYS TRP THR MET SEQRES 9 A 922 VAL LYS LYS TYR GLN LEU ASP VAL PRO ASN VAL SER SER SEQRES 10 A 922 ASP MET ASN GLN VAL LEU LYS ASN LEU ILE LEU GLU GLN SEQRES 11 A 922 PRO LEU THR LYS TYR THR LEU ASN SER SER LEU ALA LYS SEQRES 12 A 922 GLU LYS GLY LYS THR GLN ARG GLU VAL HIS LEU GLY SER SEQRES 13 A 922 GLY GLN ALA ASN GLN TRP THR SER GLN ARG ASN GLN HIS SEQRES 14 A 922 ASP LEU ASN ASN ASN PRO SER PRO ASN ALA SER THR GLY SEQRES 15 A 922 PHE LYS LEU THR THR GLY ASN ALA TYR ARG LYS LEU SER SEQRES 16 A 922 GLU SER TRP PRO ILE TYR GLU PRO ILE ASP GLY THR LYS SEQRES 17 A 922 GLN GLY LYS GLY LYS ASP SER SER GLY TRP SER SER THR SEQRES 18 A 922 GLU GLU ASN GLU ALA LYS ASN ASP ALA PRO SER VAL SER SEQRES 19 A 922 GLY GLY GLY SER SER SER GLY THR PHE ASN LYS TYR LEU SEQRES 20 A 922 ASN THR LYS GLN ALA LEU GLU SER ILE GLY ILE LEU PHE SEQRES 21 A 922 ASP ASP GLN THR PRO ARG ASN VAL ILE THR GLN LEU TYR SEQRES 22 A 922 TYR ALA SER THR SER LYS LEU ALA VAL THR ASN ASN HIS SEQRES 23 A 922 ILE VAL VAL MET GLY ASN SER PHE LEU PRO SER MET TRP SEQRES 24 A 922 TYR TRP VAL VAL GLU ARG SER ALA GLN GLU ASN ALA SER SEQRES 25 A 922 ASN LYS PRO THR TRP PHE ALA ASN THR ASN LEU ASP TRP SEQRES 26 A 922 GLY GLU ASP LYS GLN LYS GLN PHE VAL GLU ASN GLN LEU SEQRES 27 A 922 GLY TYR LYS GLU THR THR SER THR ASN SER HIS ASN PHE SEQRES 28 A 922 HIS SER LYS SER PHE THR GLN PRO ALA TYR LEU ILE SER SEQRES 29 A 922 GLY ILE ASP SER VAL ASN ASP GLN ILE ILE PHE SER GLY SEQRES 30 A 922 PHE LYS ALA GLY SER VAL GLY TYR ASP SER SER SER SER SEQRES 31 A 922 SER SER SER SER SER SER SER THR LYS ASP GLN ALA LEU SEQRES 32 A 922 ALA TRP SER THR THR THR SER LEU ASP SER LYS THR GLY SEQRES 33 A 922 TYR LYS ASP LEU VAL THR ASN ASP THR GLY LEU ASN GLY SEQRES 34 A 922 PRO ILE ASN GLY SER PHE SER ILE GLN ASP THR PHE SER SEQRES 35 A 922 PHE VAL VAL PRO TYR SER GLY ASN HIS THR ASN ASN GLY SEQRES 36 A 922 THR THR GLY PRO ILE LYS THR ALA TYR PRO VAL LYS LYS SEQRES 37 A 922 ASP GLN LYS SER THR VAL LYS ILE ASN SER LEU ILE ASN SEQRES 38 A 922 ALA THR PRO LEU ASN SER TYR GLY ASP GLU GLY ILE GLY SEQRES 39 A 922 VAL PHE ASP ALA LEU GLY LEU ASN TYR ASN PHE LYS SER SEQRES 40 A 922 ASN GLN GLU ARG LEU PRO SER ARG THR ASP GLN ILE PHE SEQRES 41 A 922 VAL TYR GLY ILE VAL SER PRO ASN GLU LEU ARG SER ALA SEQRES 42 A 922 LYS SER SER ALA ASP SER THR GLY SER ASP THR LYS VAL SEQRES 43 A 922 ASN TRP SER ASN THR GLN SER ARG TYR LEU PRO VAL PRO SEQRES 44 A 922 TYR ASN TYR SER GLU GLY ILE ILE ASP ALA ASP GLY PHE SEQRES 45 A 922 LYS ARG PRO GLU ASN ARG GLY ALA SER VAL THR THR PHE SEQRES 46 A 922 SER GLY LEU LYS SER ILE ALA PRO ASP GLY PHE ALA ASN SEQRES 47 A 922 SER ILE ALA ASN PHE SER VAL GLY LEU LYS ALA GLY ILE SEQRES 48 A 922 ASP PRO ASN PRO VAL MET SER GLY LYS LYS ALA ASN TYR SEQRES 49 A 922 GLY ALA VAL VAL LEU THR ARG GLY GLY VAL VAL ARG LEU SEQRES 50 A 922 ASN PHE ASN PRO GLY ASN ASP SER LEU LEU SER THR THR SEQRES 51 A 922 ASP ASN ASN ILE ALA PRO ILE SER PHE SER PHE THR PRO SEQRES 52 A 922 PHE THR ALA ALA GLU SER ALA VAL ASP LEU THR THR PHE SEQRES 53 A 922 LYS GLU VAL THR TYR ASN GLN GLU SER GLY LEU TRP SER SEQRES 54 A 922 TYR ILE PHE ASP SER SER LEU LYS PRO SER HIS ASP GLY SEQRES 55 A 922 LYS GLN THR PRO VAL THR ASP ASN MET GLY PHE SER VAL SEQRES 56 A 922 ILE THR VAL SER ARG THR GLY ILE GLU LEU ASN GLN ASP SEQRES 57 A 922 GLN ALA THR THR THR LEU ASP VAL ALA PRO SER ALA LEU SEQRES 58 A 922 ALA VAL GLN SER GLY ILE GLN SER THR THR GLN THR LEU SEQRES 59 A 922 THR GLY VAL LEU PRO LEU SER GLU GLU PHE SER ALA VAL SEQRES 60 A 922 ILE ALA LYS ASP SER ASP GLN ASN LYS ILE ASP ILE TYR SEQRES 61 A 922 LYS ASN ASN ASN GLY LEU PHE GLU ILE ASP THR GLN LEU SEQRES 62 A 922 SER ASN SER VAL ALA THR ASN ASN GLY GLY LEU ALA PRO SEQRES 63 A 922 SER TYR THR GLU ASN ARG VAL ASP ALA TRP GLY LYS VAL SEQRES 64 A 922 GLU PHE ALA ASP ASN SER VAL LEU GLN ALA ARG ASN LEU SEQRES 65 A 922 VAL ASP LYS THR VAL ASP GLU ILE ILE ASN THR PRO GLU SEQRES 66 A 922 ILE LEU ASN SER PHE PHE ARG PHE THR PRO ALA PHE GLU SEQRES 67 A 922 ASP GLN LYS ALA THR LEU VAL ALA THR LYS GLN SER ASP SEQRES 68 A 922 THR SER LEU SER VAL SER PRO ARG ILE GLN PHE LEU ASP SEQRES 69 A 922 GLY ASN PHE TYR ASP LEU ASN SER THR ILE ALA GLY VAL SEQRES 70 A 922 PRO LEU ASN ILE GLY PHE PRO SER ARG VAL PHE ALA GLY SEQRES 71 A 922 PHE ALA ALA LEU PRO ALA HIS HIS HIS HIS HIS HIS HET PO4 A1001 5 HETNAM PO4 PHOSPHATE ION FORMUL 2 PO4 O4 P 3- FORMUL 3 HOH *24(H2 O) HELIX 1 AA1 LEU A 54 ALA A 58 1 5 HELIX 2 AA2 SER A 138 LYS A 146 1 9 HELIX 3 AA3 LEU A 159 ALA A 164 1 6 HELIX 4 AA4 THR A 170 LEU A 176 1 7 HELIX 5 AA5 ALA A 181 GLN A 187 5 7 HELIX 6 AA6 ASP A 236 THR A 243 1 8 HELIX 7 AA7 THR A 243 ALA A 252 1 10 HELIX 8 AA8 THR A 271 ILE A 278 1 8 HELIX 9 AA9 ASN A 289 THR A 299 1 11 HELIX 10 AB1 GLU A 349 GLN A 359 1 11 HELIX 11 AB2 GLY A 438 THR A 444 1 7 HELIX 12 AB3 GLU A 513 GLY A 522 1 10 HELIX 13 AB4 SER A 548 SER A 561 1 14 HELIX 14 AB5 PRO A 581 ASN A 583 5 3 HELIX 15 AB6 THR A 687 ALA A 692 1 6 HELIX 16 AB7 ASP A 694 THR A 696 5 3 HELIX 17 AB8 SER A 717 LYS A 719 5 3 HELIX 18 AB9 ASP A 812 THR A 821 1 10 HELIX 19 AC1 SER A 847 ARG A 852 1 6 HELIX 20 AC2 THR A 858 ASN A 864 1 7 HELIX 21 AC3 THR A 865 ASN A 870 1 6 SHEET 1 AA1 3 PHE A 28 LYS A 31 0 SHEET 2 AA1 3 ASN A 36 TYR A 40 -1 O TYR A 40 N PHE A 28 SHEET 3 AA1 3 SER A 52 ASP A 53 -1 O SER A 52 N VAL A 37 SHEET 1 AA2 5 TYR A 64 HIS A 72 0 SHEET 2 AA2 5 ASN A 75 SER A 82 -1 O LEU A 79 N ALA A 67 SHEET 3 AA2 5 SER A 109 ASN A 116 -1 O PHE A 114 N LEU A 76 SHEET 4 AA2 5 TRP A 124 LEU A 132 -1 O VAL A 127 N GLU A 113 SHEET 5 AA2 5 SER A 334 ASN A 335 1 O ASN A 335 N GLN A 131 SHEET 1 AA3 2 VAL A 87 TYR A 89 0 SHEET 2 AA3 2 ILE A 97 PHE A 99 -1 O SER A 98 N LYS A 88 SHEET 1 AA4 6 GLY A 204 LYS A 206 0 SHEET 2 AA4 6 GLN A 423 LEU A 425 -1 O ALA A 424 N PHE A 205 SHEET 3 AA4 6 SER A 404 ASP A 408 -1 N GLY A 406 O LEU A 425 SHEET 4 AA4 6 ILE A 498 ILE A 502 -1 O ASN A 499 N TYR A 407 SHEET 5 AA4 6 ILE A 149 GLU A 151 1 N GLU A 151 O ILE A 502 SHEET 6 AA4 6 TYR A 213 LYS A 215 -1 O ARG A 214 N LEU A 150 SHEET 1 AA5 2 TYR A 223 PRO A 225 0 SHEET 2 AA5 2 TYR A 268 ASN A 270 -1 O LEU A 269 N GLU A 224 SHEET 1 AA6 2 PHE A 282 ASP A 283 0 SHEET 2 AA6 2 THR A 286 PRO A 287 -1 O THR A 286 N ASP A 283 SHEET 1 AA7 4 LYS A 301 VAL A 304 0 SHEET 2 AA7 4 HIS A 308 MET A 312 -1 O VAL A 310 N ALA A 303 SHEET 3 AA7 4 TRP A 321 GLU A 326 -1 O VAL A 325 N ILE A 309 SHEET 4 AA7 4 PRO A 337 TRP A 339 -1 O THR A 338 N TYR A 322 SHEET 1 AA8 2 THR A 343 LEU A 345 0 SHEET 2 AA8 2 VAL A 568 TRP A 570 1 O VAL A 568 N ASN A 344 SHEET 1 AA9 4 TYR A 383 VAL A 391 0 SHEET 2 AA9 4 GLN A 394 LYS A 401 -1 O ILE A 396 N ASP A 389 SHEET 3 AA9 4 ILE A 541 VAL A 547 -1 O VAL A 543 N GLY A 399 SHEET 4 AA9 4 THR A 573 TYR A 577 -1 O ARG A 576 N PHE A 542 SHEET 1 AB1 2 SER A 585 GLU A 586 0 SHEET 2 AB1 2 LYS A 611 SER A 612 -1 O LYS A 611 N GLU A 586 SHEET 1 AB2 4 SER A 626 ILE A 633 0 SHEET 2 AB2 4 TYR A 646 THR A 652 -1 O GLY A 647 N GLY A 632 SHEET 3 AB2 4 GLY A 655 ASN A 662 -1 O LEU A 659 N ALA A 648 SHEET 4 AB2 4 SER A 667 LEU A 668 -1 O SER A 667 N ASN A 662 SHEET 1 AB3 4 SER A 626 ILE A 633 0 SHEET 2 AB3 4 TYR A 646 THR A 652 -1 O GLY A 647 N GLY A 632 SHEET 3 AB3 4 GLY A 655 ASN A 662 -1 O LEU A 659 N ALA A 648 SHEET 4 AB3 4 PHE A 681 PRO A 685 -1 O SER A 682 N ARG A 658 SHEET 1 AB4 4 PHE A 698 ASN A 704 0 SHEET 2 AB4 4 LEU A 709 ASP A 715 -1 O ILE A 713 N LYS A 699 SHEET 3 AB4 4 PHE A 735 ARG A 742 -1 O ILE A 738 N TYR A 712 SHEET 4 AB4 4 ALA A 762 SER A 771 -1 O VAL A 765 N THR A 739 SHEET 1 AB5 4 THR A 775 LEU A 780 0 SHEET 2 AB5 4 PHE A 786 LYS A 792 -1 O ALA A 788 N LEU A 780 SHEET 3 AB5 4 LYS A 798 ASN A 805 -1 O LYS A 798 N ALA A 791 SHEET 4 AB5 4 LEU A 808 ILE A 811 -1 O GLU A 810 N LYS A 803 SHEET 1 AB6 2 LYS A 840 PHE A 843 0 SHEET 2 AB6 2 PHE A 873 THR A 876 -1 O ARG A 874 N GLU A 842 SHEET 1 AB7 3 ALA A 884 LYS A 890 0 SHEET 2 AB7 3 SER A 895 GLN A 903 -1 O SER A 899 N VAL A 887 SHEET 3 AB7 3 PHE A 909 TYR A 910 -1 O TYR A 910 N ILE A 902 SHEET 1 AB8 3 ALA A 884 LYS A 890 0 SHEET 2 AB8 3 SER A 895 GLN A 903 -1 O SER A 899 N VAL A 887 SHEET 3 AB8 3 ARG A 928 ALA A 931 -1 O PHE A 930 N LEU A 896 SHEET 1 AB9 2 THR A 915 ILE A 916 0 SHEET 2 AB9 2 VAL A 919 PRO A 920 -1 O VAL A 919 N ILE A 916 SITE 1 AC1 4 THR A 48 ASP A 49 SER A 50 LYS A 51 CRYST1 109.600 152.940 172.710 90.00 90.00 90.00 I 2 2 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009124 0.000000 0.000000 0.00000 SCALE2 0.000000 0.006539 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005790 0.00000