HEADER IMMUNE SYSTEM 01-FEB-17 5MZM TITLE STRUCTURE OF H-2DB IN COMPLEX WITH TEIPP APL TRH4 P3P COMPND MOL_ID: 1; COMPND 2 MOLECULE: H-2 CLASS I HISTOCOMPATIBILITY ANTIGEN, D-B ALPHA CHAIN; COMPND 3 CHAIN: A, D; COMPND 4 SYNONYM: H-2D(B); COMPND 5 ENGINEERED: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: BETA-2-MICROGLOBULIN; COMPND 8 CHAIN: B, E; COMPND 9 ENGINEERED: YES; COMPND 10 MOL_ID: 3; COMPND 11 MOLECULE: CERAMIDE SYNTHASE 5 DERIVED PEPTIDE TRH4 P3P; COMPND 12 CHAIN: C, F; COMPND 13 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 3 ORGANISM_COMMON: MOUSE; SOURCE 4 ORGANISM_TAXID: 10090; SOURCE 5 GENE: H2-D1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 MOL_ID: 2; SOURCE 9 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 10 ORGANISM_COMMON: MOUSE; SOURCE 11 ORGANISM_TAXID: 10090; SOURCE 12 GENE: B2M; SOURCE 13 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 14 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 15 MOL_ID: 3; SOURCE 16 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 17 ORGANISM_TAXID: 10090; SOURCE 18 EXPRESSION_SYSTEM: SYNTHETIC CONSTRUCT; SOURCE 19 EXPRESSION_SYSTEM_TAXID: 32630 KEYWDS CANCER, NEO-EPITOPE, T-CELL EPITOPES ASSOCIATED WITH IMPAIRED PEPTIDE KEYWDS 2 PROCESSING, MHC-I, IMMUNE SYSTEM EXPDTA X-RAY DIFFRACTION AUTHOR I.HAFSTRAND,A.ACHOUR,T.SANDALOVA REVDAT 3 17-JAN-24 5MZM 1 REMARK REVDAT 2 18-APR-18 5MZM 1 JRNL REVDAT 1 21-MAR-18 5MZM 0 JRNL AUTH I.HAFSTRAND,E.M.DOORDUIJN,R.SUN,A.TALYZINA,M.SLUIJTER, JRNL AUTH 2 S.PELLEGRINO,T.SANDALOVA,A.D.DURU,T.VAN HALL,A.ACHOUR JRNL TITL THE IMMUNOGENICITY OF A PROLINE-SUBSTITUTED ALTERED PEPTIDE JRNL TITL 2 LIGAND TOWARD THE CANCER-ASSOCIATED TEIPP NEOEPITOPE TRH4 IS JRNL TITL 3 UNRELATED TO COMPLEX STABILITY. JRNL REF J. IMMUNOL. V. 200 2860 2018 JRNL REFN ESSN 1550-6606 JRNL PMID 29507106 JRNL DOI 10.4049/JIMMUNOL.1700228 REMARK 2 REMARK 2 RESOLUTION. 2.40 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.11.1_2575: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.40 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 36.20 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.370 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 41747 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.229 REMARK 3 R VALUE (WORKING SET) : 0.226 REMARK 3 FREE R VALUE : 0.268 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.460 REMARK 3 FREE R VALUE TEST SET COUNT : 2280 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 36.2047 - 6.0389 0.99 2522 129 0.2026 0.1922 REMARK 3 2 6.0389 - 4.7968 1.00 2466 155 0.1986 0.2291 REMARK 3 3 4.7968 - 4.1915 1.00 2480 152 0.1964 0.2344 REMARK 3 4 4.1915 - 3.8087 1.00 2450 152 0.2057 0.2698 REMARK 3 5 3.8087 - 3.5359 1.00 2493 122 0.2116 0.2710 REMARK 3 6 3.5359 - 3.3276 1.00 2460 158 0.2300 0.2683 REMARK 3 7 3.3276 - 3.1611 1.00 2442 132 0.2363 0.2946 REMARK 3 8 3.1611 - 3.0235 1.00 2493 141 0.2510 0.3256 REMARK 3 9 3.0235 - 2.9072 1.00 2448 161 0.2636 0.2892 REMARK 3 10 2.9072 - 2.8069 1.00 2467 137 0.2622 0.2895 REMARK 3 11 2.8069 - 2.7192 1.00 2483 136 0.2685 0.3268 REMARK 3 12 2.7192 - 2.6415 1.00 2474 123 0.2650 0.3259 REMARK 3 13 2.6415 - 2.5720 1.00 2488 117 0.2592 0.3232 REMARK 3 14 2.5720 - 2.5092 1.00 2414 166 0.2675 0.3044 REMARK 3 15 2.5092 - 2.4522 1.00 2454 147 0.2571 0.3246 REMARK 3 16 2.4522 - 2.4000 1.00 2433 152 0.3045 0.3498 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.360 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 28.970 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.003 6454 REMARK 3 ANGLE : 0.657 8758 REMARK 3 CHIRALITY : 0.043 876 REMARK 3 PLANARITY : 0.005 1140 REMARK 3 DIHEDRAL : 12.653 3853 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 10 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 1 THROUGH 84 ) REMARK 3 ORIGIN FOR THE GROUP (A): 1.5789 6.8158 86.2147 REMARK 3 T TENSOR REMARK 3 T11: 0.3181 T22: 0.2862 REMARK 3 T33: 0.2397 T12: -0.0651 REMARK 3 T13: 0.0675 T23: -0.0376 REMARK 3 L TENSOR REMARK 3 L11: 4.1037 L22: 2.0774 REMARK 3 L33: 2.6992 L12: 0.2595 REMARK 3 L13: 0.1803 L23: -0.4835 REMARK 3 S TENSOR REMARK 3 S11: 0.1149 S12: 0.1055 S13: 0.5569 REMARK 3 S21: -0.0826 S22: 0.0396 S23: -0.4218 REMARK 3 S31: -0.3276 S32: 0.5481 S33: -0.1065 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 85 THROUGH 174 ) REMARK 3 ORIGIN FOR THE GROUP (A): -7.8117 -4.9934 86.0532 REMARK 3 T TENSOR REMARK 3 T11: 0.2863 T22: 0.2304 REMARK 3 T33: 0.2139 T12: -0.0143 REMARK 3 T13: 0.0225 T23: -0.0020 REMARK 3 L TENSOR REMARK 3 L11: 3.3676 L22: 2.6568 REMARK 3 L33: 1.8939 L12: -0.2402 REMARK 3 L13: -1.3752 L23: 0.8032 REMARK 3 S TENSOR REMARK 3 S11: -0.1411 S12: 0.3021 S13: -0.2891 REMARK 3 S21: -0.1076 S22: 0.0273 S23: -0.0434 REMARK 3 S31: 0.1305 S32: -0.0242 S33: 0.1047 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 175 THROUGH 276 ) REMARK 3 ORIGIN FOR THE GROUP (A): 9.8090 -10.0290 119.6551 REMARK 3 T TENSOR REMARK 3 T11: 0.5581 T22: 0.3639 REMARK 3 T33: 0.6021 T12: 0.0209 REMARK 3 T13: -0.1226 T23: -0.0748 REMARK 3 L TENSOR REMARK 3 L11: 3.3420 L22: 4.6214 REMARK 3 L33: 2.0360 L12: -0.3979 REMARK 3 L13: 0.5319 L23: 0.3614 REMARK 3 S TENSOR REMARK 3 S11: 0.1076 S12: -0.3605 S13: -0.7718 REMARK 3 S21: 0.9813 S22: 0.2251 S23: -0.1156 REMARK 3 S31: 0.2914 S32: 0.1899 S33: -0.3108 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 1 THROUGH 99 ) REMARK 3 ORIGIN FOR THE GROUP (A): 4.9551 10.8377 111.6894 REMARK 3 T TENSOR REMARK 3 T11: 0.2759 T22: 0.3697 REMARK 3 T33: 0.2559 T12: -0.0590 REMARK 3 T13: 0.0309 T23: -0.0937 REMARK 3 L TENSOR REMARK 3 L11: 1.6946 L22: 1.5359 REMARK 3 L33: 3.1322 L12: 1.0564 REMARK 3 L13: 1.2611 L23: 0.9512 REMARK 3 S TENSOR REMARK 3 S11: -0.0629 S12: -0.1775 S13: 0.1976 REMARK 3 S21: -0.0506 S22: 0.1581 S23: -0.1803 REMARK 3 S31: -0.3797 S32: 0.3010 S33: -0.0798 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 1 THROUGH 9 ) REMARK 3 ORIGIN FOR THE GROUP (A): -6.2571 1.1838 79.7138 REMARK 3 T TENSOR REMARK 3 T11: 0.4717 T22: 0.4253 REMARK 3 T33: 0.3207 T12: -0.0022 REMARK 3 T13: 0.0754 T23: 0.0545 REMARK 3 L TENSOR REMARK 3 L11: 1.0177 L22: 0.0928 REMARK 3 L33: 1.4689 L12: -0.0635 REMARK 3 L13: 1.1209 L23: -0.1478 REMARK 3 S TENSOR REMARK 3 S11: 0.1889 S12: 0.8386 S13: 0.2018 REMARK 3 S21: -0.1011 S22: -0.0982 S23: -0.2776 REMARK 3 S31: 0.0960 S32: -0.0839 S33: -0.0634 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'D' AND (RESID 1 THROUGH 103 ) REMARK 3 ORIGIN FOR THE GROUP (A): -1.6199 -45.6710 106.7044 REMARK 3 T TENSOR REMARK 3 T11: 0.2215 T22: 0.3124 REMARK 3 T33: 0.4312 T12: 0.0829 REMARK 3 T13: -0.0772 T23: -0.0728 REMARK 3 L TENSOR REMARK 3 L11: 2.1098 L22: 4.1837 REMARK 3 L33: 2.9614 L12: 0.6314 REMARK 3 L13: 0.9975 L23: 0.2486 REMARK 3 S TENSOR REMARK 3 S11: 0.0646 S12: -0.3073 S13: -0.5772 REMARK 3 S21: 0.1598 S22: 0.2201 S23: -1.1103 REMARK 3 S31: 0.1845 S32: 0.3764 S33: -0.2761 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'D' AND (RESID 104 THROUGH 162 ) REMARK 3 ORIGIN FOR THE GROUP (A): -12.0298 -31.8924 106.5237 REMARK 3 T TENSOR REMARK 3 T11: 0.2716 T22: 0.1970 REMARK 3 T33: 0.2394 T12: 0.0233 REMARK 3 T13: -0.0783 T23: -0.0183 REMARK 3 L TENSOR REMARK 3 L11: 2.2077 L22: 2.1104 REMARK 3 L33: 1.0427 L12: -0.0935 REMARK 3 L13: 0.2548 L23: 0.8765 REMARK 3 S TENSOR REMARK 3 S11: -0.1073 S12: -0.1269 S13: 0.4134 REMARK 3 S21: 0.1638 S22: 0.0866 S23: 0.0645 REMARK 3 S31: -0.1992 S32: 0.0164 S33: -0.0166 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'D' AND (RESID 163 THROUGH 276 ) REMARK 3 ORIGIN FOR THE GROUP (A): 11.4718 -29.8738 79.6589 REMARK 3 T TENSOR REMARK 3 T11: 0.3933 T22: 0.3970 REMARK 3 T33: 0.6532 T12: 0.0660 REMARK 3 T13: 0.1276 T23: -0.0380 REMARK 3 L TENSOR REMARK 3 L11: 2.2557 L22: 3.7142 REMARK 3 L33: 1.5878 L12: 0.7237 REMARK 3 L13: -0.0731 L23: -0.2399 REMARK 3 S TENSOR REMARK 3 S11: 0.1228 S12: 0.4476 S13: 0.4508 REMARK 3 S21: -0.8965 S22: 0.1001 S23: -0.5697 REMARK 3 S31: -0.1776 S32: 0.0457 S33: -0.0718 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'E' AND (RESID 1 THROUGH 99) REMARK 3 ORIGIN FOR THE GROUP (A): 6.3742 -50.4810 82.8227 REMARK 3 T TENSOR REMARK 3 T11: 0.2688 T22: 0.2880 REMARK 3 T33: 0.2894 T12: -0.0224 REMARK 3 T13: 0.0209 T23: -0.0755 REMARK 3 L TENSOR REMARK 3 L11: 3.0358 L22: 1.8572 REMARK 3 L33: 3.1031 L12: -1.4888 REMARK 3 L13: -2.1799 L23: 1.1839 REMARK 3 S TENSOR REMARK 3 S11: -0.1811 S12: 0.1924 S13: -0.1245 REMARK 3 S21: -0.0528 S22: 0.1827 S23: -0.1171 REMARK 3 S31: 0.3310 S32: 0.0151 S33: 0.0359 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN 'F' AND (RESID 1 THROUGH 9 ) REMARK 3 ORIGIN FOR THE GROUP (A): -8.2119 -40.2160 112.9341 REMARK 3 T TENSOR REMARK 3 T11: 0.5375 T22: 0.4096 REMARK 3 T33: 0.3006 T12: 0.0304 REMARK 3 T13: -0.1293 T23: -0.0679 REMARK 3 L TENSOR REMARK 3 L11: 4.0564 L22: 1.6480 REMARK 3 L33: 1.3412 L12: 0.9957 REMARK 3 L13: -2.3798 L23: -0.7372 REMARK 3 S TENSOR REMARK 3 S11: -0.1588 S12: -0.9241 S13: 0.4250 REMARK 3 S21: 0.5127 S22: 0.2742 S23: -0.2920 REMARK 3 S31: -0.3697 S32: 0.1413 S33: -0.2294 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5MZM COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 01-FEB-17. REMARK 100 THE DEPOSITION ID IS D_1200003319. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 15-OCT-14 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : BESSY REMARK 200 BEAMLINE : 14.1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9184 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : PSI PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : IMOSFLM REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 41766 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.400 REMARK 200 RESOLUTION RANGE LOW (A) : 58.500 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 3.600 REMARK 200 R MERGE (I) : 0.08700 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 7.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.40 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.49 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 3.60 REMARK 200 R MERGE FOR SHELL (I) : 0.29000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.100 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 1S7U REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 59.48 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.04 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 2 M AMMONIUM SULPHATE, 0.1 M TRIS-HCL, REMARK 280 0.5 M NACL, PH 8, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE REMARK 280 277.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z+1/2 REMARK 290 4555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 34.20503 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 62.50500 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 47.66589 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 34.20503 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 62.50500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 47.66589 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4840 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 19840 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -43.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4170 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 19540 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -24.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: D, E, F REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ALA A 177 REMARK 465 THR A 178 REMARK 465 LEU A 179 REMARK 465 LEU A 180 REMARK 465 SER A 195 REMARK 465 ASN D 176 REMARK 465 ALA D 177 REMARK 465 THR D 178 REMARK 465 LEU D 179 REMARK 465 LEU D 224 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS D 196 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O SER D 195 N GLY D 197 2.07 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LEU A 17 137.12 -33.64 REMARK 500 ASN A 220 35.98 38.35 REMARK 500 ASP A 227 -4.78 76.52 REMARK 500 LYS B 48 77.96 53.92 REMARK 500 TRP B 60 -9.23 83.26 REMARK 500 ASP B 98 30.58 -90.68 REMARK 500 THR C 6 -104.11 -99.01 REMARK 500 LYS D 196 -46.36 50.60 REMARK 500 LYS D 253 36.77 -94.81 REMARK 500 GLU D 275 77.05 61.64 REMARK 500 TRP E 60 -0.76 83.51 REMARK 500 THR F 6 -95.40 -94.53 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 B 101 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 B 102 DBREF 5MZM A 1 276 UNP P01899 HA11_MOUSE 25 300 DBREF 5MZM B 1 99 UNP P01887 B2MG_MOUSE 21 119 DBREF 5MZM C 1 9 PDB 5MZM 5MZM 1 9 DBREF 5MZM D 1 276 UNP P01899 HA11_MOUSE 25 300 DBREF 5MZM E 1 99 UNP P01887 B2MG_MOUSE 21 119 DBREF 5MZM F 1 9 PDB 5MZM 5MZM 1 9 SEQADV 5MZM ASP B 85 UNP P01887 ALA 105 CONFLICT SEQADV 5MZM ASP E 85 UNP P01887 ALA 105 CONFLICT SEQRES 1 A 276 GLY PRO HIS SER MET ARG TYR PHE GLU THR ALA VAL SER SEQRES 2 A 276 ARG PRO GLY LEU GLU GLU PRO ARG TYR ILE SER VAL GLY SEQRES 3 A 276 TYR VAL ASP ASN LYS GLU PHE VAL ARG PHE ASP SER ASP SEQRES 4 A 276 ALA GLU ASN PRO ARG TYR GLU PRO ARG ALA PRO TRP MET SEQRES 5 A 276 GLU GLN GLU GLY PRO GLU TYR TRP GLU ARG GLU THR GLN SEQRES 6 A 276 LYS ALA LYS GLY GLN GLU GLN TRP PHE ARG VAL SER LEU SEQRES 7 A 276 ARG ASN LEU LEU GLY TYR TYR ASN GLN SER ALA GLY GLY SEQRES 8 A 276 SER HIS THR LEU GLN GLN MET SER GLY CYS ASP LEU GLY SEQRES 9 A 276 SER ASP TRP ARG LEU LEU ARG GLY TYR LEU GLN PHE ALA SEQRES 10 A 276 TYR GLU GLY ARG ASP TYR ILE ALA LEU ASN GLU ASP LEU SEQRES 11 A 276 LYS THR TRP THR ALA ALA ASP MET ALA ALA GLN ILE THR SEQRES 12 A 276 ARG ARG LYS TRP GLU GLN SER GLY ALA ALA GLU HIS TYR SEQRES 13 A 276 LYS ALA TYR LEU GLU GLY GLU CYS VAL GLU TRP LEU HIS SEQRES 14 A 276 ARG TYR LEU LYS ASN GLY ASN ALA THR LEU LEU ARG THR SEQRES 15 A 276 ASP SER PRO LYS ALA HIS VAL THR HIS HIS PRO ARG SER SEQRES 16 A 276 LYS GLY GLU VAL THR LEU ARG CYS TRP ALA LEU GLY PHE SEQRES 17 A 276 TYR PRO ALA ASP ILE THR LEU THR TRP GLN LEU ASN GLY SEQRES 18 A 276 GLU GLU LEU THR GLN ASP MET GLU LEU VAL GLU THR ARG SEQRES 19 A 276 PRO ALA GLY ASP GLY THR PHE GLN LYS TRP ALA SER VAL SEQRES 20 A 276 VAL VAL PRO LEU GLY LYS GLU GLN ASN TYR THR CYS ARG SEQRES 21 A 276 VAL TYR HIS GLU GLY LEU PRO GLU PRO LEU THR LEU ARG SEQRES 22 A 276 TRP GLU PRO SEQRES 1 B 99 ILE GLN LYS THR PRO GLN ILE GLN VAL TYR SER ARG HIS SEQRES 2 B 99 PRO PRO GLU ASN GLY LYS PRO ASN ILE LEU ASN CYS TYR SEQRES 3 B 99 VAL THR GLN PHE HIS PRO PRO HIS ILE GLU ILE GLN MET SEQRES 4 B 99 LEU LYS ASN GLY LYS LYS ILE PRO LYS VAL GLU MET SER SEQRES 5 B 99 ASP MET SER PHE SER LYS ASP TRP SER PHE TYR ILE LEU SEQRES 6 B 99 ALA HIS THR GLU PHE THR PRO THR GLU THR ASP THR TYR SEQRES 7 B 99 ALA CYS ARG VAL LYS HIS ASP SER MET ALA GLU PRO LYS SEQRES 8 B 99 THR VAL TYR TRP ASP ARG ASP MET SEQRES 1 C 9 MET CYS PRO ARG MET THR ALA VAL MET SEQRES 1 D 276 GLY PRO HIS SER MET ARG TYR PHE GLU THR ALA VAL SER SEQRES 2 D 276 ARG PRO GLY LEU GLU GLU PRO ARG TYR ILE SER VAL GLY SEQRES 3 D 276 TYR VAL ASP ASN LYS GLU PHE VAL ARG PHE ASP SER ASP SEQRES 4 D 276 ALA GLU ASN PRO ARG TYR GLU PRO ARG ALA PRO TRP MET SEQRES 5 D 276 GLU GLN GLU GLY PRO GLU TYR TRP GLU ARG GLU THR GLN SEQRES 6 D 276 LYS ALA LYS GLY GLN GLU GLN TRP PHE ARG VAL SER LEU SEQRES 7 D 276 ARG ASN LEU LEU GLY TYR TYR ASN GLN SER ALA GLY GLY SEQRES 8 D 276 SER HIS THR LEU GLN GLN MET SER GLY CYS ASP LEU GLY SEQRES 9 D 276 SER ASP TRP ARG LEU LEU ARG GLY TYR LEU GLN PHE ALA SEQRES 10 D 276 TYR GLU GLY ARG ASP TYR ILE ALA LEU ASN GLU ASP LEU SEQRES 11 D 276 LYS THR TRP THR ALA ALA ASP MET ALA ALA GLN ILE THR SEQRES 12 D 276 ARG ARG LYS TRP GLU GLN SER GLY ALA ALA GLU HIS TYR SEQRES 13 D 276 LYS ALA TYR LEU GLU GLY GLU CYS VAL GLU TRP LEU HIS SEQRES 14 D 276 ARG TYR LEU LYS ASN GLY ASN ALA THR LEU LEU ARG THR SEQRES 15 D 276 ASP SER PRO LYS ALA HIS VAL THR HIS HIS PRO ARG SER SEQRES 16 D 276 LYS GLY GLU VAL THR LEU ARG CYS TRP ALA LEU GLY PHE SEQRES 17 D 276 TYR PRO ALA ASP ILE THR LEU THR TRP GLN LEU ASN GLY SEQRES 18 D 276 GLU GLU LEU THR GLN ASP MET GLU LEU VAL GLU THR ARG SEQRES 19 D 276 PRO ALA GLY ASP GLY THR PHE GLN LYS TRP ALA SER VAL SEQRES 20 D 276 VAL VAL PRO LEU GLY LYS GLU GLN ASN TYR THR CYS ARG SEQRES 21 D 276 VAL TYR HIS GLU GLY LEU PRO GLU PRO LEU THR LEU ARG SEQRES 22 D 276 TRP GLU PRO SEQRES 1 E 99 ILE GLN LYS THR PRO GLN ILE GLN VAL TYR SER ARG HIS SEQRES 2 E 99 PRO PRO GLU ASN GLY LYS PRO ASN ILE LEU ASN CYS TYR SEQRES 3 E 99 VAL THR GLN PHE HIS PRO PRO HIS ILE GLU ILE GLN MET SEQRES 4 E 99 LEU LYS ASN GLY LYS LYS ILE PRO LYS VAL GLU MET SER SEQRES 5 E 99 ASP MET SER PHE SER LYS ASP TRP SER PHE TYR ILE LEU SEQRES 6 E 99 ALA HIS THR GLU PHE THR PRO THR GLU THR ASP THR TYR SEQRES 7 E 99 ALA CYS ARG VAL LYS HIS ASP SER MET ALA GLU PRO LYS SEQRES 8 E 99 THR VAL TYR TRP ASP ARG ASP MET SEQRES 1 F 9 MET CYS PRO ARG MET THR ALA VAL MET HET GOL A 301 6 HET SO4 B 101 5 HET SO4 B 102 5 HETNAM GOL GLYCEROL HETNAM SO4 SULFATE ION HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 7 GOL C3 H8 O3 FORMUL 8 SO4 2(O4 S 2-) FORMUL 10 HOH *131(H2 O) HELIX 1 AA1 ALA A 49 GLU A 55 5 7 HELIX 2 AA2 GLY A 56 TYR A 85 1 30 HELIX 3 AA3 ALA A 140 SER A 150 1 11 HELIX 4 AA4 GLY A 151 GLY A 162 1 12 HELIX 5 AA5 GLY A 162 ASN A 176 1 15 HELIX 6 AA6 LYS A 253 GLN A 255 5 3 HELIX 7 AA7 ALA D 49 GLU D 55 5 7 HELIX 8 AA8 GLY D 56 TYR D 85 1 30 HELIX 9 AA9 ALA D 140 SER D 150 1 11 HELIX 10 AB1 GLY D 151 GLY D 162 1 12 HELIX 11 AB2 GLY D 162 ASN D 174 1 13 SHEET 1 AA1 8 GLU A 46 PRO A 47 0 SHEET 2 AA1 8 LYS A 31 ASP A 37 -1 N ARG A 35 O GLU A 46 SHEET 3 AA1 8 ARG A 21 VAL A 28 -1 N SER A 24 O PHE A 36 SHEET 4 AA1 8 HIS A 3 SER A 13 -1 N ARG A 6 O TYR A 27 SHEET 5 AA1 8 HIS A 93 LEU A 103 -1 O LEU A 103 N HIS A 3 SHEET 6 AA1 8 LEU A 109 TYR A 118 -1 O LEU A 110 N ASP A 102 SHEET 7 AA1 8 ARG A 121 LEU A 126 -1 O LEU A 126 N LEU A 114 SHEET 8 AA1 8 TRP A 133 THR A 134 -1 O THR A 134 N ALA A 125 SHEET 1 AA2 4 LYS A 186 PRO A 193 0 SHEET 2 AA2 4 GLU A 198 PHE A 208 -1 O TRP A 204 N HIS A 188 SHEET 3 AA2 4 PHE A 241 PRO A 250 -1 O VAL A 249 N VAL A 199 SHEET 4 AA2 4 GLU A 229 LEU A 230 -1 N GLU A 229 O SER A 246 SHEET 1 AA3 4 LYS A 186 PRO A 193 0 SHEET 2 AA3 4 GLU A 198 PHE A 208 -1 O TRP A 204 N HIS A 188 SHEET 3 AA3 4 PHE A 241 PRO A 250 -1 O VAL A 249 N VAL A 199 SHEET 4 AA3 4 ARG A 234 PRO A 235 -1 N ARG A 234 O GLN A 242 SHEET 1 AA4 4 GLU A 222 GLU A 223 0 SHEET 2 AA4 4 THR A 214 LEU A 219 -1 N LEU A 219 O GLU A 222 SHEET 3 AA4 4 TYR A 257 TYR A 262 -1 O TYR A 262 N THR A 214 SHEET 4 AA4 4 LEU A 270 LEU A 272 -1 O LEU A 272 N CYS A 259 SHEET 1 AA5 4 GLN B 6 SER B 11 0 SHEET 2 AA5 4 ASN B 21 PHE B 30 -1 O ASN B 24 N TYR B 10 SHEET 3 AA5 4 PHE B 62 PHE B 70 -1 O ALA B 66 N CYS B 25 SHEET 4 AA5 4 GLU B 50 MET B 51 -1 N GLU B 50 O HIS B 67 SHEET 1 AA6 4 GLN B 6 SER B 11 0 SHEET 2 AA6 4 ASN B 21 PHE B 30 -1 O ASN B 24 N TYR B 10 SHEET 3 AA6 4 PHE B 62 PHE B 70 -1 O ALA B 66 N CYS B 25 SHEET 4 AA6 4 SER B 55 PHE B 56 -1 N SER B 55 O TYR B 63 SHEET 1 AA7 4 LYS B 44 LYS B 45 0 SHEET 2 AA7 4 GLU B 36 LYS B 41 -1 N LYS B 41 O LYS B 44 SHEET 3 AA7 4 TYR B 78 LYS B 83 -1 O ARG B 81 N GLN B 38 SHEET 4 AA7 4 LYS B 91 TYR B 94 -1 O VAL B 93 N CYS B 80 SHEET 1 AA8 8 GLU D 46 PRO D 47 0 SHEET 2 AA8 8 LYS D 31 ASP D 37 -1 N ARG D 35 O GLU D 46 SHEET 3 AA8 8 ARG D 21 VAL D 28 -1 N GLY D 26 O VAL D 34 SHEET 4 AA8 8 HIS D 3 SER D 13 -1 N ARG D 6 O TYR D 27 SHEET 5 AA8 8 HIS D 93 LEU D 103 -1 O HIS D 93 N SER D 13 SHEET 6 AA8 8 LEU D 109 TYR D 118 -1 O LEU D 110 N ASP D 102 SHEET 7 AA8 8 ARG D 121 LEU D 126 -1 O LEU D 126 N LEU D 114 SHEET 8 AA8 8 TRP D 133 THR D 134 -1 O THR D 134 N ALA D 125 SHEET 1 AA9 4 LYS D 186 ARG D 194 0 SHEET 2 AA9 4 GLU D 198 PHE D 208 -1 O GLU D 198 N ARG D 194 SHEET 3 AA9 4 PHE D 241 VAL D 249 -1 O ALA D 245 N CYS D 203 SHEET 4 AA9 4 GLU D 229 LEU D 230 -1 N GLU D 229 O SER D 246 SHEET 1 AB1 4 LYS D 186 ARG D 194 0 SHEET 2 AB1 4 GLU D 198 PHE D 208 -1 O GLU D 198 N ARG D 194 SHEET 3 AB1 4 PHE D 241 VAL D 249 -1 O ALA D 245 N CYS D 203 SHEET 4 AB1 4 ARG D 234 PRO D 235 -1 N ARG D 234 O GLN D 242 SHEET 1 AB2 3 THR D 214 GLN D 218 0 SHEET 2 AB2 3 THR D 258 TYR D 262 -1 O TYR D 262 N THR D 214 SHEET 3 AB2 3 LEU D 270 LEU D 272 -1 O LEU D 272 N CYS D 259 SHEET 1 AB3 4 GLN E 6 SER E 11 0 SHEET 2 AB3 4 ASN E 21 PHE E 30 -1 O ASN E 24 N TYR E 10 SHEET 3 AB3 4 PHE E 62 PHE E 70 -1 O ALA E 66 N CYS E 25 SHEET 4 AB3 4 GLU E 50 MET E 51 -1 N GLU E 50 O HIS E 67 SHEET 1 AB4 4 GLN E 6 SER E 11 0 SHEET 2 AB4 4 ASN E 21 PHE E 30 -1 O ASN E 24 N TYR E 10 SHEET 3 AB4 4 PHE E 62 PHE E 70 -1 O ALA E 66 N CYS E 25 SHEET 4 AB4 4 SER E 55 PHE E 56 -1 N SER E 55 O TYR E 63 SHEET 1 AB5 4 LYS E 44 LYS E 45 0 SHEET 2 AB5 4 GLU E 36 LYS E 41 -1 N LYS E 41 O LYS E 44 SHEET 3 AB5 4 TYR E 78 LYS E 83 -1 O ARG E 81 N GLN E 38 SHEET 4 AB5 4 LYS E 91 TYR E 94 -1 O LYS E 91 N VAL E 82 SSBOND 1 CYS A 101 CYS A 164 1555 1555 2.04 SSBOND 2 CYS A 203 CYS A 259 1555 1555 2.02 SSBOND 3 CYS B 25 CYS B 80 1555 1555 2.03 SSBOND 4 CYS D 101 CYS D 164 1555 1555 2.04 SSBOND 5 CYS D 203 CYS D 259 1555 1555 2.02 SSBOND 6 CYS E 25 CYS E 80 1555 1555 2.03 CISPEP 1 TYR A 209 PRO A 210 0 3.32 CISPEP 2 HIS B 31 PRO B 32 0 4.22 CISPEP 3 TYR D 209 PRO D 210 0 4.56 CISPEP 4 HIS E 31 PRO E 32 0 3.78 SITE 1 AC1 2 ARG A 144 ARG A 145 SITE 1 AC2 4 ARG B 12 ILE B 22 HIS B 67 HOH B 207 SITE 1 AC3 3 GLN B 38 LYS B 45 LYS B 83 CRYST1 91.350 125.010 98.053 90.00 103.53 90.00 I 1 2 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010947 0.000000 0.002635 0.00000 SCALE2 0.000000 0.007999 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010490 0.00000