HEADER ISOMERASE 02-FEB-17 5N0G TITLE CRYSTAL STRUCTURE OF COBH T85A (PRECORRIN-8X METHYL MUTASE) COMPLEXED TITLE 2 WITH C5 ALLYL-HBA COMPND MOL_ID: 1; COMPND 2 MOLECULE: PRECORRIN-8X METHYLMUTASE; COMPND 3 CHAIN: A; COMPND 4 EC: 5.4.1.2; COMPND 5 ENGINEERED: YES; COMPND 6 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: RHODOBACTER CAPSULATUS SB 1003; SOURCE 3 ORGANISM_TAXID: 272942; SOURCE 4 GENE: COBH, RCAP_RCC02046; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 511693 KEYWDS ISOMERASE, COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR E.H.NEMOTO-SMITH,A.D.LAWRENCE,D.G.BROWN,M.J.WARREN REVDAT 1 14-FEB-18 5N0G 0 JRNL AUTH A.D.LAWRENCE,E.H.NEMOTO-SMITH,E.C.DEERY,D.G.BROWN,J.TULLET, JRNL AUTH 2 I.R.BROWN,M.HOWARD,H.I.BOSHOFF,C.E.BARRY III,M.J.WARREN JRNL TITL NOVEL COBALAMIN ANALOGUES AND THEIR APPLICATION IN THE JRNL TITL 2 TRAFFICKING OF COBALAMIN IN BACTERIA, WORMS AND PLANTS JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.57 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0155 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.57 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 48.38 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.8 REMARK 3 NUMBER OF REFLECTIONS : 29762 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.175 REMARK 3 R VALUE (WORKING SET) : 0.172 REMARK 3 FREE R VALUE : 0.238 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.700 REMARK 3 FREE R VALUE TEST SET COUNT : 1461 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.57 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.61 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2209 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.74 REMARK 3 BIN R VALUE (WORKING SET) : 0.2770 REMARK 3 BIN FREE R VALUE SET COUNT : 111 REMARK 3 BIN FREE R VALUE : 0.3000 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1530 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 71 REMARK 3 SOLVENT ATOMS : 184 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 24.88 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 23.10 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.31000 REMARK 3 B22 (A**2) : 0.04000 REMARK 3 B33 (A**2) : -0.54000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.67000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.102 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.094 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.078 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 5.053 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.954 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.925 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1670 ; 0.030 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 1649 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2292 ; 2.731 ; 2.021 REMARK 3 BOND ANGLES OTHERS (DEGREES): 3780 ; 1.278 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 215 ; 6.667 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 61 ;32.230 ;22.951 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 251 ;13.584 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 15 ;14.721 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 264 ; 0.172 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1908 ; 0.015 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 351 ; 0.005 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): 3317 ; 5.647 ; 3.000 REMARK 3 SPHERICITY; FREE ATOMS (A**2): 132 ;21.544 ; 5.000 REMARK 3 SPHERICITY; BONDED ATOMS (A**2): 3337 ; 6.226 ; 5.000 REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 2 A 209 REMARK 3 ORIGIN FOR THE GROUP (A): -14.8500 33.6090 20.8270 REMARK 3 T TENSOR REMARK 3 T11: 0.0129 T22: 0.0180 REMARK 3 T33: 0.0188 T12: 0.0008 REMARK 3 T13: -0.0005 T23: 0.0078 REMARK 3 L TENSOR REMARK 3 L11: 0.6760 L22: 0.6277 REMARK 3 L33: 0.7918 L12: -0.1219 REMARK 3 L13: -0.2352 L23: 0.1675 REMARK 3 S TENSOR REMARK 3 S11: -0.0234 S12: 0.0381 S13: 0.0362 REMARK 3 S21: -0.0559 S22: 0.0371 S23: 0.0192 REMARK 3 S31: -0.0602 S32: -0.0356 S33: -0.0137 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: U VALUES : WITH TLS ADDED HYDROGENS REMARK 3 HAVE BEEN ADDED IN THE RIDING POSITIONS REMARK 4 REMARK 4 5N0G COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 03-FEB-17. REMARK 100 THE DEPOSITION ID IS D_1200003331. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 03-AUG-15 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I04-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.92819 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 2M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XIA2 0.3.8.0 REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 57377 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.570 REMARK 200 RESOLUTION RANGE LOW (A) : 48.380 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 92.4 REMARK 200 DATA REDUNDANCY : 1.815 REMARK 200 R MERGE (I) : 0.20000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 2.6700 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.57 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.61 REMARK 200 COMPLETENESS FOR SHELL (%) : 90.9 REMARK 200 DATA REDUNDANCY IN SHELL : 1.79 REMARK 200 R MERGE FOR SHELL (I) : 0.74700 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 0.990 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: REFMAC REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 53.11 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.62 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 20% PEG 8000, 0.2M CALCIUM ACETATE REMARK 280 HYDRATE, 0.1M SODIUM CACODYLATE PH6.5, 20% METHANOL, VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 292.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 35.61500 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 33.31500 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 35.61500 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 33.31500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5400 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 15830 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -23.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 -7.67807 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 48.31370 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 OE2 GLU A 149 O HOH A 415 2556 2.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLU A 34 CD GLU A 34 OE2 0.087 REMARK 500 GLU A 128 CD GLU A 128 OE1 0.073 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP A 8 CB - CG - OD1 ANGL. DEV. = 7.9 DEGREES REMARK 500 ARG A 39 NE - CZ - NH2 ANGL. DEV. = -3.2 DEGREES REMARK 500 ARG A 54 NE - CZ - NH1 ANGL. DEV. = 3.5 DEGREES REMARK 500 ARG A 64 NE - CZ - NH2 ANGL. DEV. = -4.4 DEGREES REMARK 500 ARG A 78 NE - CZ - NH1 ANGL. DEV. = 4.3 DEGREES REMARK 500 ARG A 103 NE - CZ - NH2 ANGL. DEV. = -3.1 DEGREES REMARK 500 ARG A 115 NE - CZ - NH1 ANGL. DEV. = 3.1 DEGREES REMARK 500 ARG A 115 NE - CZ - NH2 ANGL. DEV. = 5.0 DEGREES REMARK 500 ASP A 150 CB - CG - OD2 ANGL. DEV. = -5.6 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 91 39.18 -147.96 REMARK 500 ASN A 136 -68.19 -122.28 REMARK 500 ASN A 136 -34.67 -137.45 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 8F5 A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 302 DBREF 5N0G A 2 209 UNP D5AV08 D5AV08_RHOCB 2 209 SEQADV 5N0G ALA A 85 UNP D5AV08 THR 85 ENGINEERED MUTATION SEQRES 1 A 208 PRO HIS GLU TYR GLU LYS ASP GLY ALA LYS ILE TYR VAL SEQRES 2 A 208 GLN SER PHE ALA THR ILE ARG ALA GLU ALA ASP LEU ALA SEQRES 3 A 208 ARG PHE THR PRO GLU GLU GLU VAL VAL VAL VAL ARG MET SEQRES 4 A 208 ILE HIS ALA ALA GLY MET VAL GLY LEU GLU ASN HIS VAL SEQRES 5 A 208 ARG PHE ALA PRO GLY MET ALA ILE ALA ALA ARG ALA ALA SEQRES 6 A 208 LEU GLU ALA GLY ALA PRO ILE LEU CYS ASP ALA ARG MET SEQRES 7 A 208 VAL SER GLU GLY ILE ALA ARG ALA ARG LEU PRO ALA LYS SEQRES 8 A 208 ASN GLU VAL ILE CYS THR LEU GLN ASP PRO ARG VAL PRO SEQRES 9 A 208 ALA LEU ALA GLN GLU MET GLY ASN THR ARG SER ALA ALA SEQRES 10 A 208 ALA LEU GLU LEU TRP ARG PRO LYS LEU GLU GLY ALA VAL SEQRES 11 A 208 VAL ALA ILE GLY ASN ALA PRO THR ALA LEU PHE HIS LEU SEQRES 12 A 208 LEU ASN MET LEU GLU ASP PRO ALA CYS PRO ARG PRO ALA SEQRES 13 A 208 ALA ILE ILE GLY CYS PRO VAL GLY PHE ILE GLY ALA ALA SEQRES 14 A 208 GLU SER LYS ALA ALA LEU ALA VAL ALA ASN PRO VAL PRO SEQRES 15 A 208 TRP VAL ILE VAL GLU GLY ARG LEU GLY GLY SER ALA ILE SEQRES 16 A 208 THR VAL ALA ALA VAL ASN ALA LEU ALA CYS ARG LYS GLU HET 8F5 A 301 65 HET GOL A 302 6 HETNAM 8F5 3-[(1~{R},2~{S},3~{S},4~{Z},7~{S},8~{S},9~{Z},15~{R}, HETNAM 2 8F5 17~{R},18~{R},19~{R})-2,7,18-TRIS(2-HYDROXY-2- HETNAM 3 8F5 OXOETHYL)-3,13,17-TRIS(3-HYDROXY-3-OXOPROPYL)-1,2,7, HETNAM 4 8F5 12,12,15,17-HEPTAMETHYL-5-PROP-2-ENYL-3,8,15,18,19,21- HETNAM 5 8F5 HEXAHYDROCORRIN-8-YL]PROPANOIC ACID HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 2 8F5 C47 H62 N4 O14 FORMUL 3 GOL C3 H8 O3 FORMUL 4 HOH *184(H2 O) HELIX 1 AA1 ASP A 8 ALA A 24 1 17 HELIX 2 AA2 THR A 30 GLY A 45 1 16 HELIX 3 AA3 GLY A 48 ASN A 51 5 4 HELIX 4 AA4 GLY A 58 ALA A 69 1 12 HELIX 5 AA5 ALA A 77 ILE A 84 1 8 HELIX 6 AA6 ALA A 85 LEU A 89 5 5 HELIX 7 AA7 ARG A 103 GLY A 112 1 10 HELIX 8 AA8 THR A 114 LEU A 120 1 7 HELIX 9 AA9 TRP A 123 GLU A 128 1 6 HELIX 10 AB1 ALA A 137 LEU A 148 1 12 HELIX 11 AB2 GLY A 168 ASN A 180 1 13 HELIX 12 AB3 GLY A 193 CYS A 206 1 14 SHEET 1 AA1 6 VAL A 53 PHE A 55 0 SHEET 2 AA1 6 TRP A 184 VAL A 187 -1 O ILE A 186 N ARG A 54 SHEET 3 AA1 6 ALA A 158 GLY A 161 1 N GLY A 161 O VAL A 185 SHEET 4 AA1 6 VAL A 131 ILE A 134 1 N VAL A 132 O ILE A 160 SHEET 5 AA1 6 ILE A 73 CYS A 75 1 N LEU A 74 O ALA A 133 SHEET 6 AA1 6 VAL A 95 ILE A 96 1 O ILE A 96 N ILE A 73 SITE 1 AC1 30 ILE A 12 TYR A 13 SER A 16 ARG A 39 SITE 2 AC1 30 HIS A 42 ALA A 77 ARG A 78 MET A 79 SITE 3 AC1 30 GLY A 83 THR A 114 ARG A 115 SER A 116 SITE 4 AC1 30 ASN A 136 ALA A 137 PRO A 138 THR A 139 SITE 5 AC1 30 VAL A 164 PHE A 166 ILE A 167 GLY A 193 SITE 6 AC1 30 SER A 194 VAL A 198 ALA A 199 ASN A 202 SITE 7 AC1 30 HOH A 412 HOH A 441 HOH A 456 HOH A 474 SITE 8 AC1 30 HOH A 513 HOH A 518 SITE 1 AC2 6 ARG A 78 VAL A 95 ILE A 96 CYS A 97 SITE 2 AC2 6 HOH A 403 HOH A 404 CRYST1 71.230 66.630 48.920 90.00 99.03 90.00 C 1 2 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014039 0.000000 0.002231 0.00000 SCALE2 0.000000 0.015008 0.000000 0.00000 SCALE3 0.000000 0.000000 0.020698 0.00000