HEADER TRANSFERASE 03-FEB-17 5N0P TITLE CRYSTAL STRUCTURE OF OPHA-DELTAC18 IN COMPLEX WITH SAH COMPND MOL_ID: 1; COMPND 2 MOLECULE: PEPTIDE N-METHYLTRANFERASE; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: OMPHALOTUS OLEARIUS; SOURCE 3 ORGANISM_TAXID: 72120; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 5 EXPRESSION_SYSTEM_TAXID: 469008 KEYWDS METHYLTRANSFERASE, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR J.H.NAISMITH,H.SONG REVDAT 3 17-JAN-24 5N0P 1 REMARK REVDAT 2 19-SEP-18 5N0P 1 JRNL REVDAT 1 14-FEB-18 5N0P 0 JRNL AUTH H.SONG,N.S.VAN DER VELDEN,S.L.SHIRAN,P.BLEIZIFFER,C.ZACH, JRNL AUTH 2 R.SIEBER,A.S.IMANI,F.KRAUSBECK,M.AEBI,M.F.FREEMAN,S.RINIKER, JRNL AUTH 3 M.KUNZLER,J.H.NAISMITH JRNL TITL A MOLECULAR MECHANISM FOR THE ENZYMATIC METHYLATION OF JRNL TITL 2 NITROGEN ATOMS WITHIN PEPTIDE BONDS. JRNL REF SCI ADV V. 4 T2720 2018 JRNL REFN ESSN 2375-2548 JRNL PMID 30151425 JRNL DOI 10.1126/SCIADV.AAT2720 REMARK 2 REMARK 2 RESOLUTION. 2.16 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0158 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.16 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 78.06 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 48538 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : FREE R-VALUE REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.201 REMARK 3 R VALUE (WORKING SET) : 0.200 REMARK 3 FREE R VALUE : 0.226 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.900 REMARK 3 FREE R VALUE TEST SET COUNT : 2499 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.16 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.21 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3551 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.0 REMARK 3 BIN R VALUE (WORKING SET) : 0.2960 REMARK 3 BIN FREE R VALUE SET COUNT : 184 REMARK 3 BIN FREE R VALUE : 0.3200 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5728 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 60 REMARK 3 SOLVENT ATOMS : 120 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 72.24 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.12000 REMARK 3 B22 (A**2) : -0.66000 REMARK 3 B33 (A**2) : 0.54000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.214 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.173 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.148 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 11.919 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.962 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.953 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 5938 ; 0.010 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 5463 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 8073 ; 1.315 ; 1.977 REMARK 3 BOND ANGLES OTHERS (DEGREES): 12689 ; 0.933 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 735 ; 5.659 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 266 ;34.593 ;24.023 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 951 ;12.266 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 38 ;17.933 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 895 ; 0.076 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 6591 ; 0.005 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 1171 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2955 ; 1.330 ; 4.096 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 2954 ; 1.330 ; 4.097 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3685 ; 2.321 ; 6.131 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 3686 ; 2.321 ; 6.131 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2983 ; 1.279 ; 4.282 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 2983 ; 1.278 ; 4.282 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 4389 ; 2.176 ; 6.349 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 6161 ; 4.550 ;47.379 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 6145 ; 4.555 ;47.286 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 7 A 501 REMARK 3 ORIGIN FOR THE GROUP (A): 13.5320 -14.0129 -24.0016 REMARK 3 T TENSOR REMARK 3 T11: 0.0373 T22: 0.1945 REMARK 3 T33: 0.1886 T12: -0.0751 REMARK 3 T13: -0.0356 T23: 0.1497 REMARK 3 L TENSOR REMARK 3 L11: 3.0433 L22: 1.6881 REMARK 3 L33: 1.8595 L12: 0.4684 REMARK 3 L13: 0.1289 L23: 0.1380 REMARK 3 S TENSOR REMARK 3 S11: 0.1073 S12: -0.2840 S13: -0.3703 REMARK 3 S21: 0.1297 S22: -0.0915 S23: 0.1069 REMARK 3 S31: 0.1901 S32: -0.3402 S33: -0.0158 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 8 B 501 REMARK 3 ORIGIN FOR THE GROUP (A): 17.2461 -14.7938 -24.5708 REMARK 3 T TENSOR REMARK 3 T11: 0.0277 T22: 0.1550 REMARK 3 T33: 0.1943 T12: -0.0409 REMARK 3 T13: -0.0292 T23: 0.1297 REMARK 3 L TENSOR REMARK 3 L11: 2.6658 L22: 1.4283 REMARK 3 L33: 1.4971 L12: 0.3241 REMARK 3 L13: -0.2088 L23: 0.3630 REMARK 3 S TENSOR REMARK 3 S11: -0.0549 S12: -0.1750 S13: -0.3535 REMARK 3 S21: 0.1204 S22: -0.0294 S23: 0.0129 REMARK 3 S31: 0.0872 S32: -0.1782 S33: 0.0843 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 5N0P COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 03-FEB-17. REMARK 100 THE DEPOSITION ID IS D_1200003320. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 01-AUG-16 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I04-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9281 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M-F REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XIA2 REMARK 200 DATA SCALING SOFTWARE : XIA2 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 51104 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.157 REMARK 200 RESOLUTION RANGE LOW (A) : 100.200 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 5.500 REMARK 200 R MERGE (I) : 0.03300 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 20.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.16 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.16 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.5 REMARK 200 DATA REDUNDANCY IN SHELL : 5.80 REMARK 200 R MERGE FOR SHELL (I) : 0.66100 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 5N0O REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 55.84 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.79 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.04 M AMMONIUM CITRATE TRIBASIC, 0.1 REMARK 280 M SODIUM CITRATE PH 5.5 AND 27% PEG MME 5000., VAPOR DIFFUSION, REMARK 280 SITTING DROP, TEMPERATURE 289K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 37.40100 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 62.24500 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 50.10800 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 62.24500 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 37.40100 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 50.10800 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 11820 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 31430 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -55.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 2 REMARK 465 THR A 3 REMARK 465 SER A 4 REMARK 465 THR A 5 REMARK 465 GLN A 6 REMARK 465 LYS A 275 REMARK 465 LYS A 276 REMARK 465 ALA A 277 REMARK 465 ARG A 387 REMARK 465 GLU A 388 REMARK 465 SER A 389 REMARK 465 GLY A 390 REMARK 465 GLU A 391 REMARK 465 GLU A 392 REMARK 465 ALA A 393 REMARK 465 SER A 394 REMARK 465 GLN A 395 REMARK 465 ASN A 396 REMARK 465 GLY A 397 REMARK 465 PHE A 398 REMARK 465 PRO A 399 REMARK 465 GLY B 2 REMARK 465 THR B 3 REMARK 465 SER B 4 REMARK 465 THR B 5 REMARK 465 GLN B 6 REMARK 465 THR B 7 REMARK 465 LEU B 266 REMARK 465 LEU B 267 REMARK 465 PRO B 268 REMARK 465 ALA B 269 REMARK 465 GLY B 270 REMARK 465 GLN B 271 REMARK 465 VAL B 272 REMARK 465 PRO B 273 REMARK 465 ASP B 274 REMARK 465 LYS B 275 REMARK 465 LYS B 276 REMARK 465 ALA B 277 REMARK 465 SER B 380 REMARK 465 SER B 381 REMARK 465 LEU B 382 REMARK 465 LEU B 383 REMARK 465 ASP B 384 REMARK 465 ALA B 385 REMARK 465 ALA B 386 REMARK 465 ARG B 387 REMARK 465 GLU B 388 REMARK 465 SER B 389 REMARK 465 GLY B 390 REMARK 465 GLU B 391 REMARK 465 GLU B 392 REMARK 465 ALA B 393 REMARK 465 SER B 394 REMARK 465 GLN B 395 REMARK 465 ASN B 396 REMARK 465 GLY B 397 REMARK 465 PHE B 398 REMARK 465 PRO B 399 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 21 119.17 -38.74 REMARK 500 ILE A 22 -59.76 71.04 REMARK 500 ASN A 58 74.90 -119.71 REMARK 500 ASN A 188 53.77 -99.68 REMARK 500 TYR A 295 64.83 -111.07 REMARK 500 ASP A 344 91.89 -170.76 REMARK 500 ILE B 22 -58.37 72.89 REMARK 500 PRO B 145 51.95 -117.70 REMARK 500 TYR B 295 69.07 -118.62 REMARK 500 ASP B 344 94.76 -163.31 REMARK 500 ASN B 377 52.35 27.45 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SAH A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SAH B 501 DBREF 5N0P A 2 399 PDB 5N0P 5N0P 2 399 DBREF 5N0P B 2 399 PDB 5N0P 5N0P 2 399 SEQRES 1 A 398 GLY THR SER THR GLN THR LYS ALA GLY SER LEU THR ILE SEQRES 2 A 398 VAL GLY THR GLY ILE GLU SER ILE GLY GLN MET THR LEU SEQRES 3 A 398 GLN ALA LEU SER TYR ILE GLU ALA ALA ALA LYS VAL PHE SEQRES 4 A 398 TYR CYS VAL ILE ASP PRO ALA THR GLU ALA PHE ILE LEU SEQRES 5 A 398 THR LYS ASN LYS ASN CYS VAL ASP LEU TYR GLN TYR TYR SEQRES 6 A 398 ASP ASN GLY LYS SER ARG LEU ASN THR TYR THR GLN MET SEQRES 7 A 398 SER GLU LEU MET VAL ARG GLU VAL ARG LYS GLY LEU ASP SEQRES 8 A 398 VAL VAL GLY VAL PHE TYR GLY HIS PRO GLY VAL PHE VAL SEQRES 9 A 398 ASN PRO SER HIS ARG ALA LEU ALA ILE ALA LYS SER GLU SEQRES 10 A 398 GLY TYR ARG ALA ARG MET LEU PRO GLY VAL SER ALA GLU SEQRES 11 A 398 ASP CYS LEU PHE ALA ASP LEU CYS ILE ASP PRO SER ASN SEQRES 12 A 398 PRO GLY CYS LEU THR TYR GLU ALA SER ASP PHE LEU ILE SEQRES 13 A 398 ARG ASP ARG PRO VAL SER ILE HIS SER HIS LEU VAL LEU SEQRES 14 A 398 PHE GLN VAL GLY CYS VAL GLY ILE ALA ASP PHE ASN PHE SEQRES 15 A 398 THR GLY PHE ASP ASN ASN LYS PHE GLY VAL LEU VAL ASP SEQRES 16 A 398 ARG LEU GLU GLN GLU TYR GLY ALA GLU HIS PRO VAL VAL SEQRES 17 A 398 HIS TYR ILE ALA ALA MET MET PRO HIS GLN ASP PRO VAL SEQRES 18 A 398 THR ASP LYS TYR THR VAL ALA GLN LEU ARG GLU PRO GLU SEQRES 19 A 398 ILE ALA LYS ARG VAL GLY GLY VAL SER THR PHE TYR ILE SEQRES 20 A 398 PRO PRO LYS ALA ARG LYS ALA SER ASN LEU ASP ILE ILE SEQRES 21 A 398 ARG ARG LEU GLU LEU LEU PRO ALA GLY GLN VAL PRO ASP SEQRES 22 A 398 LYS LYS ALA ARG ILE TYR PRO ALA ASN GLN TRP GLU PRO SEQRES 23 A 398 ASP VAL PRO GLU VAL GLU PRO TYR ARG PRO SER ASP GLN SEQRES 24 A 398 ALA ALA ILE ALA GLN LEU ALA ASP HIS ALA PRO PRO GLU SEQRES 25 A 398 GLN TYR GLN PRO LEU ALA THR SER LYS ALA MET SER ASP SEQRES 26 A 398 VAL MET THR LYS LEU ALA LEU ASP PRO LYS ALA LEU ALA SEQRES 27 A 398 ASP TYR LYS ALA ASP HIS ARG ALA PHE ALA GLN SER VAL SEQRES 28 A 398 PRO ASP LEU THR PRO GLN GLU ARG ALA ALA LEU GLU LEU SEQRES 29 A 398 GLY ASP SER TRP ALA ILE ARG CYS ALA MET LYS ASN MET SEQRES 30 A 398 PRO SER SER LEU LEU ASP ALA ALA ARG GLU SER GLY GLU SEQRES 31 A 398 GLU ALA SER GLN ASN GLY PHE PRO SEQRES 1 B 398 GLY THR SER THR GLN THR LYS ALA GLY SER LEU THR ILE SEQRES 2 B 398 VAL GLY THR GLY ILE GLU SER ILE GLY GLN MET THR LEU SEQRES 3 B 398 GLN ALA LEU SER TYR ILE GLU ALA ALA ALA LYS VAL PHE SEQRES 4 B 398 TYR CYS VAL ILE ASP PRO ALA THR GLU ALA PHE ILE LEU SEQRES 5 B 398 THR LYS ASN LYS ASN CYS VAL ASP LEU TYR GLN TYR TYR SEQRES 6 B 398 ASP ASN GLY LYS SER ARG LEU ASN THR TYR THR GLN MET SEQRES 7 B 398 SER GLU LEU MET VAL ARG GLU VAL ARG LYS GLY LEU ASP SEQRES 8 B 398 VAL VAL GLY VAL PHE TYR GLY HIS PRO GLY VAL PHE VAL SEQRES 9 B 398 ASN PRO SER HIS ARG ALA LEU ALA ILE ALA LYS SER GLU SEQRES 10 B 398 GLY TYR ARG ALA ARG MET LEU PRO GLY VAL SER ALA GLU SEQRES 11 B 398 ASP CYS LEU PHE ALA ASP LEU CYS ILE ASP PRO SER ASN SEQRES 12 B 398 PRO GLY CYS LEU THR TYR GLU ALA SER ASP PHE LEU ILE SEQRES 13 B 398 ARG ASP ARG PRO VAL SER ILE HIS SER HIS LEU VAL LEU SEQRES 14 B 398 PHE GLN VAL GLY CYS VAL GLY ILE ALA ASP PHE ASN PHE SEQRES 15 B 398 THR GLY PHE ASP ASN ASN LYS PHE GLY VAL LEU VAL ASP SEQRES 16 B 398 ARG LEU GLU GLN GLU TYR GLY ALA GLU HIS PRO VAL VAL SEQRES 17 B 398 HIS TYR ILE ALA ALA MET MET PRO HIS GLN ASP PRO VAL SEQRES 18 B 398 THR ASP LYS TYR THR VAL ALA GLN LEU ARG GLU PRO GLU SEQRES 19 B 398 ILE ALA LYS ARG VAL GLY GLY VAL SER THR PHE TYR ILE SEQRES 20 B 398 PRO PRO LYS ALA ARG LYS ALA SER ASN LEU ASP ILE ILE SEQRES 21 B 398 ARG ARG LEU GLU LEU LEU PRO ALA GLY GLN VAL PRO ASP SEQRES 22 B 398 LYS LYS ALA ARG ILE TYR PRO ALA ASN GLN TRP GLU PRO SEQRES 23 B 398 ASP VAL PRO GLU VAL GLU PRO TYR ARG PRO SER ASP GLN SEQRES 24 B 398 ALA ALA ILE ALA GLN LEU ALA ASP HIS ALA PRO PRO GLU SEQRES 25 B 398 GLN TYR GLN PRO LEU ALA THR SER LYS ALA MET SER ASP SEQRES 26 B 398 VAL MET THR LYS LEU ALA LEU ASP PRO LYS ALA LEU ALA SEQRES 27 B 398 ASP TYR LYS ALA ASP HIS ARG ALA PHE ALA GLN SER VAL SEQRES 28 B 398 PRO ASP LEU THR PRO GLN GLU ARG ALA ALA LEU GLU LEU SEQRES 29 B 398 GLY ASP SER TRP ALA ILE ARG CYS ALA MET LYS ASN MET SEQRES 30 B 398 PRO SER SER LEU LEU ASP ALA ALA ARG GLU SER GLY GLU SEQRES 31 B 398 GLU ALA SER GLN ASN GLY PHE PRO HET SAH A 501 26 HET EDO A 502 4 HET SAH B 501 26 HET EDO B 502 4 HETNAM SAH S-ADENOSYL-L-HOMOCYSTEINE HETNAM EDO 1,2-ETHANEDIOL HETSYN EDO ETHYLENE GLYCOL FORMUL 3 SAH 2(C14 H20 N6 O5 S) FORMUL 4 EDO 2(C2 H6 O2) FORMUL 7 HOH *120(H2 O) HELIX 1 AA1 THR A 26 ALA A 36 1 11 HELIX 2 AA2 ASP A 45 ASN A 56 1 12 HELIX 3 AA3 TYR A 63 TYR A 66 5 4 HELIX 4 AA4 SER A 71 LYS A 89 1 19 HELIX 5 AA5 VAL A 105 GLU A 118 1 14 HELIX 6 AA6 SER A 129 CYS A 139 1 11 HELIX 7 AA7 ALA A 152 ARG A 158 1 7 HELIX 8 AA8 LYS A 190 GLY A 203 1 14 HELIX 9 AA9 ALA A 229 ARG A 232 5 4 HELIX 10 AB1 GLU A 233 LYS A 238 1 6 HELIX 11 AB2 ASN A 257 LEU A 264 1 8 HELIX 12 AB3 ARG A 296 GLN A 305 1 10 HELIX 13 AB4 SER A 321 ASP A 334 1 14 HELIX 14 AB5 ASP A 334 ASP A 344 1 11 HELIX 15 AB6 ASP A 344 SER A 351 1 8 HELIX 16 AB7 THR A 356 GLY A 366 1 11 HELIX 17 AB8 ASP A 367 ASN A 377 1 11 HELIX 18 AB9 SER A 380 ALA A 385 1 6 HELIX 19 AC1 THR B 26 ALA B 36 1 11 HELIX 20 AC2 ASP B 45 ASN B 56 1 12 HELIX 21 AC3 TYR B 63 TYR B 66 5 4 HELIX 22 AC4 SER B 71 LYS B 89 1 19 HELIX 23 AC5 VAL B 105 GLU B 118 1 14 HELIX 24 AC6 SER B 129 CYS B 139 1 11 HELIX 25 AC7 ALA B 152 ARG B 158 1 7 HELIX 26 AC8 LYS B 190 TYR B 202 1 13 HELIX 27 AC9 ALA B 229 ARG B 232 5 4 HELIX 28 AD1 GLU B 233 LYS B 238 1 6 HELIX 29 AD2 ASN B 257 GLU B 265 1 9 HELIX 30 AD3 ARG B 296 GLN B 305 1 10 HELIX 31 AD4 LEU B 306 ASP B 308 5 3 HELIX 32 AD5 SER B 321 ASP B 334 1 14 HELIX 33 AD6 ASP B 334 ASP B 344 1 11 HELIX 34 AD7 ASP B 344 VAL B 352 1 9 HELIX 35 AD8 THR B 356 GLY B 366 1 11 HELIX 36 AD9 ASP B 367 LYS B 376 1 10 SHEET 1 AA1 5 CYS A 59 ASP A 61 0 SHEET 2 AA1 5 LYS A 38 CYS A 42 1 N TYR A 41 O VAL A 60 SHEET 3 AA1 5 ASP A 92 PHE A 97 1 O VAL A 94 N PHE A 40 SHEET 4 AA1 5 SER A 11 GLY A 16 1 N SER A 11 O VAL A 93 SHEET 5 AA1 5 ARG A 121 MET A 124 1 O ARG A 123 N ILE A 14 SHEET 1 AA210 VAL A 222 THR A 227 0 SHEET 2 AA210 PRO A 207 ILE A 212 -1 N VAL A 208 O TYR A 226 SHEET 3 AA210 THR A 245 ILE A 248 -1 O THR A 245 N TYR A 211 SHEET 4 AA210 HIS A 167 PHE A 171 -1 N LEU A 168 O ILE A 248 SHEET 5 AA210 CYS A 147 GLU A 151 1 N LEU A 148 O VAL A 169 SHEET 6 AA210 CYS B 147 GLU B 151 -1 O CYS B 147 N THR A 149 SHEET 7 AA210 HIS B 167 PHE B 171 1 O VAL B 169 N LEU B 148 SHEET 8 AA210 THR B 245 ILE B 248 -1 O ILE B 248 N LEU B 168 SHEET 9 AA210 PRO B 207 ILE B 212 -1 N TYR B 211 O THR B 245 SHEET 10 AA210 VAL B 222 THR B 227 -1 O TYR B 226 N VAL B 208 SHEET 1 AA3 5 CYS B 59 ASP B 61 0 SHEET 2 AA3 5 LYS B 38 CYS B 42 1 N TYR B 41 O VAL B 60 SHEET 3 AA3 5 ASP B 92 PHE B 97 1 O VAL B 96 N PHE B 40 SHEET 4 AA3 5 SER B 11 GLY B 16 1 N SER B 11 O VAL B 93 SHEET 5 AA3 5 ARG B 121 MET B 124 1 O ARG B 121 N LEU B 12 CISPEP 1 ASN A 144 PRO A 145 0 5.11 CISPEP 2 TYR A 280 PRO A 281 0 0.97 CISPEP 3 ASN B 144 PRO B 145 0 7.86 CISPEP 4 TYR B 280 PRO B 281 0 -1.40 SITE 1 AC1 18 TYR A 98 GLY A 99 HIS A 100 VAL A 103 SITE 2 AC1 18 VAL A 105 SER A 129 ALA A 130 PHE A 171 SITE 3 AC1 18 GLN A 172 TYR A 211 ILE A 212 ALA A 213 SITE 4 AC1 18 GLY A 242 VAL A 243 SER A 244 THR A 245 SITE 5 AC1 18 HOH A 606 HOH A 642 SITE 1 AC2 5 LYS A 342 ASP A 344 HIS A 345 ARG B 346 SITE 2 AC2 5 HOH B 613 SITE 1 AC3 18 TYR B 98 GLY B 99 HIS B 100 VAL B 103 SITE 2 AC3 18 PHE B 104 VAL B 105 SER B 129 ALA B 130 SITE 3 AC3 18 PHE B 171 GLN B 172 TYR B 211 ILE B 212 SITE 4 AC3 18 ALA B 213 GLY B 242 VAL B 243 SER B 244 SITE 5 AC3 18 THR B 245 HOH B 606 CRYST1 74.802 100.216 124.490 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013369 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009978 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008033 0.00000