HEADER TRANSFERASE 03-FEB-17 5N0X TITLE CRYSTAL STRUCTURE OF OPHA-DELTAC6 IN COMPLEX WITH SAM COMPND MOL_ID: 1; COMPND 2 MOLECULE: PEPTIDE N-METHYLTRANSFERASE; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: OMPHALOTUS OLEARIUS; SOURCE 3 ORGANISM_TAXID: 72120; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 5 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 6 EXPRESSION_SYSTEM_VECTOR_TYPE: PET24 KEYWDS METHYLTRANSFERASE, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR H.SONG,J.H.NAISMITH REVDAT 4 20-NOV-24 5N0X 1 REMARK REVDAT 3 17-JAN-24 5N0X 1 LINK REVDAT 2 19-SEP-18 5N0X 1 JRNL REVDAT 1 14-FEB-18 5N0X 0 JRNL AUTH H.SONG,N.S.VAN DER VELDEN,S.L.SHIRAN,P.BLEIZIFFER,C.ZACH, JRNL AUTH 2 R.SIEBER,A.S.IMANI,F.KRAUSBECK,M.AEBI,M.F.FREEMAN,S.RINIKER, JRNL AUTH 3 M.KUNZLER,J.H.NAISMITH JRNL TITL A MOLECULAR MECHANISM FOR THE ENZYMATIC METHYLATION OF JRNL TITL 2 NITROGEN ATOMS WITHIN PEPTIDE BONDS. JRNL REF SCI ADV V. 4 T2720 2018 JRNL REFN ESSN 2375-2548 JRNL PMID 30151425 JRNL DOI 10.1126/SCIADV.AAT2720 REMARK 2 REMARK 2 RESOLUTION. 1.67 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0158 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.67 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 78.04 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.1 REMARK 3 NUMBER OF REFLECTIONS : 99062 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : FREE R-VALUE REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.197 REMARK 3 R VALUE (WORKING SET) : 0.196 REMARK 3 FREE R VALUE : 0.224 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.900 REMARK 3 FREE R VALUE TEST SET COUNT : 5147 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.67 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.71 REMARK 3 REFLECTION IN BIN (WORKING SET) : 7096 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 97.06 REMARK 3 BIN R VALUE (WORKING SET) : 0.3700 REMARK 3 BIN FREE R VALUE SET COUNT : 353 REMARK 3 BIN FREE R VALUE : 0.3630 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5842 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 60 REMARK 3 SOLVENT ATOMS : 443 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 39.29 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.04000 REMARK 3 B22 (A**2) : -0.16000 REMARK 3 B33 (A**2) : 0.12000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.099 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.098 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.086 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 5.524 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.965 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.955 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 6179 ; 0.010 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 5697 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 8423 ; 1.344 ; 1.982 REMARK 3 BOND ANGLES OTHERS (DEGREES): 13253 ; 0.949 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 772 ; 5.634 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 273 ;35.324 ;24.066 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 996 ;13.049 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 40 ;16.822 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 932 ; 0.080 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 6937 ; 0.005 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 1217 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 3088 ; 0.797 ; 2.250 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 3088 ; 0.797 ; 2.250 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3874 ; 1.421 ; 3.361 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 3875 ; 1.421 ; 3.361 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 3091 ; 0.692 ; 2.347 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 3091 ; 0.692 ; 2.347 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 4550 ; 1.191 ; 3.487 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 6590 ; 4.727 ;27.356 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 6490 ; 4.631 ;26.731 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 7 A 501 REMARK 3 ORIGIN FOR THE GROUP (A): 88.4377 116.0513 145.0024 REMARK 3 T TENSOR REMARK 3 T11: 0.0079 T22: 0.0164 REMARK 3 T33: 0.0922 T12: 0.0054 REMARK 3 T13: 0.0042 T23: 0.0303 REMARK 3 L TENSOR REMARK 3 L11: 0.9654 L22: 1.5718 REMARK 3 L33: 1.5522 L12: 0.0836 REMARK 3 L13: -0.0353 L23: 0.4602 REMARK 3 S TENSOR REMARK 3 S11: -0.0559 S12: 0.0347 S13: 0.0773 REMARK 3 S21: -0.0038 S22: 0.0312 S23: -0.0241 REMARK 3 S31: 0.0785 S32: 0.1061 S33: 0.0246 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 7 B 501 REMARK 3 ORIGIN FOR THE GROUP (A): 85.2043 115.7172 144.7735 REMARK 3 T TENSOR REMARK 3 T11: 0.0175 T22: 0.0086 REMARK 3 T33: 0.0868 T12: 0.0004 REMARK 3 T13: 0.0034 T23: 0.0272 REMARK 3 L TENSOR REMARK 3 L11: 1.0812 L22: 1.2908 REMARK 3 L33: 1.4516 L12: 0.0577 REMARK 3 L13: -0.1098 L23: 0.3024 REMARK 3 S TENSOR REMARK 3 S11: -0.0621 S12: 0.0363 S13: 0.0805 REMARK 3 S21: -0.0668 S22: 0.0192 S23: 0.0769 REMARK 3 S31: 0.1067 S32: 0.0086 S33: 0.0429 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 5N0X COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 03-FEB-17. REMARK 100 THE DEPOSITION ID IS D_1200003228. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 25-SEP-16 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I04-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9281 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M-F REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XIA2 REMARK 200 DATA SCALING SOFTWARE : XIA2 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 104957 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.670 REMARK 200 RESOLUTION RANGE LOW (A) : 78.040 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 4.300 REMARK 200 R MERGE (I) : 0.04500 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 12.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.67 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.70 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.2 REMARK 200 DATA REDUNDANCY IN SHELL : 4.40 REMARK 200 R MERGE FOR SHELL (I) : 0.94800 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 1.300 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 5N0O REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 50.70 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.50 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.02 % OCTYL BETA-D-GLUCOPYRANOSIDE REMARK 280 (OG), 0.2 M KCL, 0.1 M BIS-TRIS PH 6.5 AND 20% PEG 4000, VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 289K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 36.37000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 60.63300 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 50.98000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 60.63300 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 36.37000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 50.98000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 14410 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 29770 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -98.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 2 REMARK 465 THR A 3 REMARK 465 SER A 4 REMARK 465 THR A 5 REMARK 465 GLN A 6 REMARK 465 ALA A 269 REMARK 465 GLY A 270 REMARK 465 GLN A 271 REMARK 465 VAL A 272 REMARK 465 PRO A 273 REMARK 465 ASP A 274 REMARK 465 LYS A 275 REMARK 465 LYS A 276 REMARK 465 SER A 381 REMARK 465 LEU A 382 REMARK 465 LEU A 383 REMARK 465 ASP A 384 REMARK 465 ALA A 385 REMARK 465 ALA A 386 REMARK 465 ARG A 387 REMARK 465 GLU A 388 REMARK 465 SER A 389 REMARK 465 GLY A 390 REMARK 465 GLU A 391 REMARK 465 GLU A 392 REMARK 465 ALA A 393 REMARK 465 SER A 394 REMARK 465 GLN A 395 REMARK 465 ASN A 396 REMARK 465 GLY A 397 REMARK 465 PHE A 398 REMARK 465 PRO A 399 REMARK 465 TRP A 400 REMARK 465 VAL A 401 REMARK 465 ILE A 402 REMARK 465 VAL A 403 REMARK 465 GLY B 2 REMARK 465 THR B 3 REMARK 465 SER B 4 REMARK 465 THR B 5 REMARK 465 GLN B 6 REMARK 465 SER B 380 REMARK 465 SER B 381 REMARK 465 LEU B 382 REMARK 465 LEU B 383 REMARK 465 ASP B 384 REMARK 465 ALA B 385 REMARK 465 ALA B 386 REMARK 465 ARG B 387 REMARK 465 GLU B 388 REMARK 465 SER B 389 REMARK 465 GLY B 390 REMARK 465 GLU B 391 REMARK 465 GLU B 392 REMARK 465 ALA B 393 REMARK 465 SER B 394 REMARK 465 GLN B 395 REMARK 465 ASN B 396 REMARK 465 GLY B 397 REMARK 465 PHE B 398 REMARK 465 PRO B 399 REMARK 465 TRP B 400 REMARK 465 VAL B 401 REMARK 465 ILE B 402 REMARK 465 VAL B 403 REMARK 465 VAL B 404 REMARK 465 SAR B 405 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ILE A 22 -58.29 70.88 REMARK 500 ILE A 22 -58.29 72.41 REMARK 500 CYS A 175 56.32 -144.82 REMARK 500 GLU A 265 63.53 65.67 REMARK 500 ILE B 22 -56.61 70.65 REMARK 500 CYS B 175 53.61 -142.54 REMARK 500 ASP B 180 -152.36 -111.85 REMARK 500 TYR B 295 69.45 -116.72 REMARK 500 HIS B 309 137.69 -32.55 REMARK 500 ALA B 319 88.32 -152.50 REMARK 500 THR B 320 -168.27 -121.52 REMARK 500 ASP B 344 95.99 -161.79 REMARK 500 ASP B 354 -1.49 74.79 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 VAL A 404 SAR A 405 -148.77 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 820 DISTANCE = 7.36 ANGSTROMS REMARK 525 HOH B 823 DISTANCE = 5.96 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 503 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 PHE A 135 O REMARK 620 2 ILE A 140 O 77.4 REMARK 620 N 1 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SAM A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG A 503 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SAM B 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG B 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residues SAR A 405 and MVA A REMARK 800 406 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residues MVA A 406 and IML A REMARK 800 407 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residues IML A 407 and SAR A REMARK 800 408 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residues MVA B 406 and IML B REMARK 800 407 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residues IML B 407 and SAR B REMARK 800 408 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for Di-peptide SAR B 408 and VAL B REMARK 800 409 DBREF 5N0X A 2 411 PDB 5N0X 5N0X 2 411 DBREF 5N0X B 2 411 PDB 5N0X 5N0X 2 411 SEQRES 1 A 410 GLY THR SER THR GLN THR LYS ALA GLY SER LEU THR ILE SEQRES 2 A 410 VAL GLY THR GLY ILE GLU SER ILE GLY GLN MET THR LEU SEQRES 3 A 410 GLN ALA LEU SER TYR ILE GLU ALA ALA ALA LYS VAL PHE SEQRES 4 A 410 TYR CYS VAL ILE ASP PRO ALA THR GLU ALA PHE ILE LEU SEQRES 5 A 410 THR LYS ASN LYS ASN CYS VAL ASP LEU TYR GLN TYR TYR SEQRES 6 A 410 ASP ASN GLY LYS SER ARG LEU ASN THR TYR THR GLN MET SEQRES 7 A 410 SER GLU LEU MET VAL ARG GLU VAL ARG LYS GLY LEU ASP SEQRES 8 A 410 VAL VAL GLY VAL PHE TYR GLY HIS PRO GLY VAL PHE VAL SEQRES 9 A 410 ASN PRO SER HIS ARG ALA LEU ALA ILE ALA LYS SER GLU SEQRES 10 A 410 GLY TYR ARG ALA ARG MET LEU PRO GLY VAL SER ALA GLU SEQRES 11 A 410 ASP CYS LEU PHE ALA ASP LEU CYS ILE ASP PRO SER ASN SEQRES 12 A 410 PRO GLY CYS LEU THR TYR GLU ALA SER ASP PHE LEU ILE SEQRES 13 A 410 ARG ASP ARG PRO VAL SER ILE HIS SER HIS LEU VAL LEU SEQRES 14 A 410 PHE GLN VAL GLY CYS VAL GLY ILE ALA ASP PHE ASN PHE SEQRES 15 A 410 THR GLY PHE ASP ASN ASN LYS PHE GLY VAL LEU VAL ASP SEQRES 16 A 410 ARG LEU GLU GLN GLU TYR GLY ALA GLU HIS PRO VAL VAL SEQRES 17 A 410 HIS TYR ILE ALA ALA MET MET PRO HIS GLN ASP PRO VAL SEQRES 18 A 410 THR ASP LYS TYR THR VAL ALA GLN LEU ARG GLU PRO GLU SEQRES 19 A 410 ILE ALA LYS ARG VAL GLY GLY VAL SER THR PHE TYR ILE SEQRES 20 A 410 PRO PRO LYS ALA ARG LYS ALA SER ASN LEU ASP ILE ILE SEQRES 21 A 410 ARG ARG LEU GLU LEU LEU PRO ALA GLY GLN VAL PRO ASP SEQRES 22 A 410 LYS LYS ALA ARG ILE TYR PRO ALA ASN GLN TRP GLU PRO SEQRES 23 A 410 ASP VAL PRO GLU VAL GLU PRO TYR ARG PRO SER ASP GLN SEQRES 24 A 410 ALA ALA ILE ALA GLN LEU ALA ASP HIS ALA PRO PRO GLU SEQRES 25 A 410 GLN TYR GLN PRO LEU ALA THR SER LYS ALA MET SER ASP SEQRES 26 A 410 VAL MET THR LYS LEU ALA LEU ASP PRO LYS ALA LEU ALA SEQRES 27 A 410 ASP TYR LYS ALA ASP HIS ARG ALA PHE ALA GLN SER VAL SEQRES 28 A 410 PRO ASP LEU THR PRO GLN GLU ARG ALA ALA LEU GLU LEU SEQRES 29 A 410 GLY ASP SER TRP ALA ILE ARG CYS ALA MET LYS ASN MET SEQRES 30 A 410 PRO SER SER LEU LEU ASP ALA ALA ARG GLU SER GLY GLU SEQRES 31 A 410 GLU ALA SER GLN ASN GLY PHE PRO TRP VAL ILE VAL VAL SEQRES 32 A 410 SAR MVA IML SAR VAL ILE GLY SEQRES 1 B 410 GLY THR SER THR GLN THR LYS ALA GLY SER LEU THR ILE SEQRES 2 B 410 VAL GLY THR GLY ILE GLU SER ILE GLY GLN MET THR LEU SEQRES 3 B 410 GLN ALA LEU SER TYR ILE GLU ALA ALA ALA LYS VAL PHE SEQRES 4 B 410 TYR CYS VAL ILE ASP PRO ALA THR GLU ALA PHE ILE LEU SEQRES 5 B 410 THR LYS ASN LYS ASN CYS VAL ASP LEU TYR GLN TYR TYR SEQRES 6 B 410 ASP ASN GLY LYS SER ARG LEU ASN THR TYR THR GLN MET SEQRES 7 B 410 SER GLU LEU MET VAL ARG GLU VAL ARG LYS GLY LEU ASP SEQRES 8 B 410 VAL VAL GLY VAL PHE TYR GLY HIS PRO GLY VAL PHE VAL SEQRES 9 B 410 ASN PRO SER HIS ARG ALA LEU ALA ILE ALA LYS SER GLU SEQRES 10 B 410 GLY TYR ARG ALA ARG MET LEU PRO GLY VAL SER ALA GLU SEQRES 11 B 410 ASP CYS LEU PHE ALA ASP LEU CYS ILE ASP PRO SER ASN SEQRES 12 B 410 PRO GLY CYS LEU THR TYR GLU ALA SER ASP PHE LEU ILE SEQRES 13 B 410 ARG ASP ARG PRO VAL SER ILE HIS SER HIS LEU VAL LEU SEQRES 14 B 410 PHE GLN VAL GLY CYS VAL GLY ILE ALA ASP PHE ASN PHE SEQRES 15 B 410 THR GLY PHE ASP ASN ASN LYS PHE GLY VAL LEU VAL ASP SEQRES 16 B 410 ARG LEU GLU GLN GLU TYR GLY ALA GLU HIS PRO VAL VAL SEQRES 17 B 410 HIS TYR ILE ALA ALA MET MET PRO HIS GLN ASP PRO VAL SEQRES 18 B 410 THR ASP LYS TYR THR VAL ALA GLN LEU ARG GLU PRO GLU SEQRES 19 B 410 ILE ALA LYS ARG VAL GLY GLY VAL SER THR PHE TYR ILE SEQRES 20 B 410 PRO PRO LYS ALA ARG LYS ALA SER ASN LEU ASP ILE ILE SEQRES 21 B 410 ARG ARG LEU GLU LEU LEU PRO ALA GLY GLN VAL PRO ASP SEQRES 22 B 410 LYS LYS ALA ARG ILE TYR PRO ALA ASN GLN TRP GLU PRO SEQRES 23 B 410 ASP VAL PRO GLU VAL GLU PRO TYR ARG PRO SER ASP GLN SEQRES 24 B 410 ALA ALA ILE ALA GLN LEU ALA ASP HIS ALA PRO PRO GLU SEQRES 25 B 410 GLN TYR GLN PRO LEU ALA THR SER LYS ALA MET SER ASP SEQRES 26 B 410 VAL MET THR LYS LEU ALA LEU ASP PRO LYS ALA LEU ALA SEQRES 27 B 410 ASP TYR LYS ALA ASP HIS ARG ALA PHE ALA GLN SER VAL SEQRES 28 B 410 PRO ASP LEU THR PRO GLN GLU ARG ALA ALA LEU GLU LEU SEQRES 29 B 410 GLY ASP SER TRP ALA ILE ARG CYS ALA MET LYS ASN MET SEQRES 30 B 410 PRO SER SER LEU LEU ASP ALA ALA ARG GLU SER GLY GLU SEQRES 31 B 410 GLU ALA SER GLN ASN GLY PHE PRO TRP VAL ILE VAL VAL SEQRES 32 B 410 SAR MVA IML SAR VAL ILE GLY HET SAR A 405 5 HET MVA A 406 8 HET IML A 407 9 HET SAR A 408 5 HET MVA B 406 8 HET IML B 407 9 HET SAR B 408 5 HET SAM A 501 27 HET EDO A 502 4 HET MG A 503 1 HET SAM B 501 27 HET MG B 502 1 HETNAM SAR SARCOSINE HETNAM MVA N-METHYLVALINE HETNAM IML N-METHYL-ISOLEUCINE HETNAM SAM S-ADENOSYLMETHIONINE HETNAM EDO 1,2-ETHANEDIOL HETNAM MG MAGNESIUM ION HETSYN EDO ETHYLENE GLYCOL FORMUL 1 SAR 3(C3 H7 N O2) FORMUL 1 MVA 2(C6 H13 N O2) FORMUL 1 IML 2(C7 H15 N O2) FORMUL 3 SAM 2(C15 H22 N6 O5 S) FORMUL 4 EDO C2 H6 O2 FORMUL 5 MG 2(MG 2+) FORMUL 8 HOH *443(H2 O) HELIX 1 AA1 THR A 26 ALA A 36 1 11 HELIX 2 AA2 ASP A 45 ASN A 56 1 12 HELIX 3 AA3 TYR A 63 TYR A 66 5 4 HELIX 4 AA4 SER A 71 LYS A 89 1 19 HELIX 5 AA5 VAL A 105 GLY A 119 1 15 HELIX 6 AA6 SER A 129 CYS A 139 1 11 HELIX 7 AA7 ALA A 152 ARG A 158 1 7 HELIX 8 AA8 LYS A 190 GLY A 203 1 14 HELIX 9 AA9 ALA A 229 ARG A 232 5 4 HELIX 10 AB1 GLU A 233 LYS A 238 1 6 HELIX 11 AB2 ASN A 257 GLU A 265 1 9 HELIX 12 AB3 ARG A 296 GLN A 305 1 10 HELIX 13 AB4 SER A 321 ASP A 334 1 14 HELIX 14 AB5 ASP A 334 ASP A 344 1 11 HELIX 15 AB6 ASP A 344 SER A 351 1 8 HELIX 16 AB7 THR A 356 GLY A 366 1 11 HELIX 17 AB8 ASP A 367 LYS A 376 1 10 HELIX 18 AB9 THR B 26 ALA B 36 1 11 HELIX 19 AC1 ASP B 45 ASN B 56 1 12 HELIX 20 AC2 TYR B 63 TYR B 66 5 4 HELIX 21 AC3 SER B 71 LYS B 89 1 19 HELIX 22 AC4 VAL B 105 GLU B 118 1 14 HELIX 23 AC5 SER B 129 CYS B 139 1 11 HELIX 24 AC6 ALA B 152 ARG B 158 1 7 HELIX 25 AC7 GLN B 172 VAL B 176 5 5 HELIX 26 AC8 LYS B 190 GLY B 203 1 14 HELIX 27 AC9 ALA B 229 ARG B 232 5 4 HELIX 28 AD1 GLU B 233 LYS B 238 1 6 HELIX 29 AD2 ASN B 257 LEU B 264 1 8 HELIX 30 AD3 ARG B 296 HIS B 309 1 14 HELIX 31 AD4 SER B 321 ASP B 334 1 14 HELIX 32 AD5 ASP B 334 ASP B 344 1 11 HELIX 33 AD6 ASP B 344 VAL B 352 1 9 HELIX 34 AD7 THR B 356 GLY B 366 1 11 HELIX 35 AD8 ASP B 367 LYS B 376 1 10 SHEET 1 AA1 5 CYS A 59 ASP A 61 0 SHEET 2 AA1 5 LYS A 38 CYS A 42 1 N TYR A 41 O VAL A 60 SHEET 3 AA1 5 ASP A 92 PHE A 97 1 O VAL A 94 N PHE A 40 SHEET 4 AA1 5 SER A 11 GLY A 16 1 N VAL A 15 O GLY A 95 SHEET 5 AA1 5 ARG A 121 MET A 124 1 O ARG A 123 N ILE A 14 SHEET 1 AA210 VAL A 222 THR A 227 0 SHEET 2 AA210 PRO A 207 ILE A 212 -1 N VAL A 208 O TYR A 226 SHEET 3 AA210 THR A 245 ILE A 248 -1 O TYR A 247 N VAL A 209 SHEET 4 AA210 HIS A 167 PHE A 171 -1 N LEU A 168 O ILE A 248 SHEET 5 AA210 CYS A 147 GLU A 151 1 N LEU A 148 O VAL A 169 SHEET 6 AA210 CYS B 147 GLU B 151 -1 O THR B 149 N CYS A 147 SHEET 7 AA210 HIS B 167 PHE B 171 1 O VAL B 169 N LEU B 148 SHEET 8 AA210 THR B 245 ILE B 248 -1 O ILE B 248 N LEU B 168 SHEET 9 AA210 PRO B 207 ILE B 212 -1 N VAL B 209 O TYR B 247 SHEET 10 AA210 VAL B 222 THR B 227 -1 O TYR B 226 N VAL B 208 SHEET 1 AA3 5 CYS B 59 ASP B 61 0 SHEET 2 AA3 5 LYS B 38 CYS B 42 1 N TYR B 41 O VAL B 60 SHEET 3 AA3 5 ASP B 92 PHE B 97 1 O VAL B 96 N PHE B 40 SHEET 4 AA3 5 SER B 11 GLY B 16 1 N VAL B 15 O GLY B 95 SHEET 5 AA3 5 ARG B 121 MET B 124 1 O ARG B 123 N ILE B 14 LINK C VAL A 404 N SAR A 405 1555 1555 1.34 LINK C SAR A 405 N MVA A 406 1555 1555 1.34 LINK C MVA A 406 N IML A 407 1555 1555 1.35 LINK C IML A 407 N SAR A 408 1555 1555 1.35 LINK C SAR A 408 N VAL A 409 1555 1555 1.34 LINK C MVA B 406 N IML B 407 1555 1555 1.35 LINK C IML B 407 N SAR B 408 1555 1555 1.35 LINK C SAR B 408 N VAL B 409 1555 1555 1.34 LINK O PHE A 135 MG MG A 503 1555 1555 2.62 LINK O ILE A 140 MG MG A 503 1555 1555 2.71 LINK O PHE B 135 MG MG B 502 1555 1555 2.72 CISPEP 1 ASN A 144 PRO A 145 0 15.34 CISPEP 2 TYR A 280 PRO A 281 0 4.93 CISPEP 3 ASN B 144 PRO B 145 0 14.98 CISPEP 4 TYR B 280 PRO B 281 0 -0.62 SITE 1 AC1 25 ILE A 19 TYR A 98 GLY A 99 HIS A 100 SITE 2 AC1 25 VAL A 103 PHE A 104 VAL A 105 SER A 129 SITE 3 AC1 25 ALA A 130 PHE A 171 GLN A 172 TYR A 211 SITE 4 AC1 25 ILE A 212 ALA A 213 GLY A 242 VAL A 243 SITE 5 AC1 25 SER A 244 THR A 245 HOH A 615 HOH A 666 SITE 6 AC1 25 HOH A 720 SAR B 408 VAL B 409 ILE B 410 SITE 7 AC1 25 GLY B 411 SITE 1 AC2 4 PHE A 40 LEU A 82 GLU A 86 HOH A 667 SITE 1 AC3 5 PHE A 135 ILE A 140 GLY B 102 HIS B 109 SITE 2 AC3 5 MET B 124 SITE 1 AC4 25 SAR A 408 VAL A 409 ILE A 410 GLY A 411 SITE 2 AC4 25 ILE B 19 TYR B 98 GLY B 99 HIS B 100 SITE 3 AC4 25 VAL B 103 PHE B 104 VAL B 105 SER B 129 SITE 4 AC4 25 ALA B 130 PHE B 171 GLN B 172 TYR B 211 SITE 5 AC4 25 ILE B 212 ALA B 213 GLY B 242 VAL B 243 SITE 6 AC4 25 SER B 244 THR B 245 HOH B 609 HOH B 691 SITE 7 AC4 25 HOH B 737 SITE 1 AC5 6 GLY A 102 HIS A 109 MET A 124 PHE B 135 SITE 2 AC5 6 ALA B 136 ILE B 140 SITE 1 AC6 5 VAL A 404 IML A 407 SAR A 408 PHE B 183 SITE 2 AC6 5 THR B 184 SITE 1 AC7 8 VAL A 404 SAR A 405 SAR A 408 TYR B 63 SITE 2 AC7 8 PHE B 181 ASN B 182 PHE B 183 PHE B 186 SITE 1 AC8 13 MVA A 406 VAL A 409 ILE A 410 ILE B 44 SITE 2 AC8 13 TYR B 63 TYR B 98 PHE B 181 ASN B 182 SITE 3 AC8 13 PHE B 183 PHE B 186 GLY B 242 VAL B 243 SITE 4 AC8 13 SAM B 501 SITE 1 AC9 4 TYR A 63 PHE A 183 THR A 184 SAR B 408 SITE 1 AD1 11 ILE A 44 TYR A 63 TYR A 98 PHE A 183 SITE 2 AD1 11 THR A 184 GLY A 242 VAL A 243 SAM A 501 SITE 3 AD1 11 MVA B 406 VAL B 409 ILE B 410 SITE 1 AD2 13 ILE A 44 TYR A 66 ARG A 72 TYR A 76 SITE 2 AD2 13 TYR A 98 GLN A 172 GLY A 242 VAL A 243 SITE 3 AD2 13 SAM A 501 MVA B 406 IML B 407 ILE B 410 SITE 4 AD2 13 GLY B 411 CRYST1 72.740 101.960 121.266 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013748 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009808 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008246 0.00000