HEADER HYDROLASE 04-FEB-17 5N12 TITLE CRYSTAL STRUCTURE OF TCE TREATED RPPEP-1 COMPND MOL_ID: 1; COMPND 2 MOLECULE: PRO-PRO ENDOPEPTIDASE; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: PPEP-1,ZINC METALLOPROTEASE ZMP1; COMPND 5 EC: 3.4.24.89; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PEPTOCLOSTRIDIUM DIFFICILE 630; SOURCE 3 ORGANISM_TAXID: 272563; SOURCE 4 GENE: ZMP1, CD630_28300; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_VARIANT: STAR KEYWDS METALLOPROTEASE, TCE, ZINC, CLOSTRIDIUM DIFFICLE, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR C.PICHLO,M.SCHACHERL,U.BAUMANN REVDAT 3 17-JAN-24 5N12 1 LINK REVDAT 2 16-OCT-19 5N12 1 REMARK REVDAT 1 30-MAY-18 5N12 0 JRNL AUTH C.PICHLO,C.TOELZER,K.CHOJNACKI,S.OCAL,M.UTHOFF,S.RUEGENBERG, JRNL AUTH 2 T.HERMANNS,M.SCHACHERL,M.S.DENZEL,K.HOFMANN,K.NIEFIND, JRNL AUTH 3 U.BAUMANN JRNL TITL IMPROVED PROTEIN-CRYSTAL IDENTIFICATION BY USING JRNL TITL 2 2,2,2-TRICHLOROETHANOL AS A FLUORESCENCE ENHANCER. JRNL REF ACTA CRYSTALLOGR F STRUCT V. 74 307 2018 JRNL REF 2 BIOL COMMUN JRNL REFN ESSN 2053-230X JRNL PMID 29717999 JRNL DOI 10.1107/S2053230X18005253 REMARK 2 REMARK 2 RESOLUTION. 1.38 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.10.1_2155 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.38 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 45.53 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.320 REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 76052 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.164 REMARK 3 R VALUE (WORKING SET) : 0.164 REMARK 3 FREE R VALUE : 0.184 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 2.790 REMARK 3 FREE R VALUE TEST SET COUNT : 2122 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 45.5544 - 3.4029 1.00 5231 152 0.1592 0.1809 REMARK 3 2 3.4029 - 2.7011 1.00 5017 143 0.1650 0.1671 REMARK 3 3 2.7011 - 2.3597 1.00 4999 145 0.1521 0.1799 REMARK 3 4 2.3597 - 2.1439 1.00 4935 139 0.1469 0.1746 REMARK 3 5 2.1439 - 1.9903 1.00 4926 143 0.1546 0.1621 REMARK 3 6 1.9903 - 1.8729 1.00 4897 140 0.1638 0.1941 REMARK 3 7 1.8729 - 1.7791 1.00 4933 141 0.1606 0.1780 REMARK 3 8 1.7791 - 1.7017 1.00 4884 140 0.1599 0.1724 REMARK 3 9 1.7017 - 1.6362 1.00 4916 141 0.1647 0.2028 REMARK 3 10 1.6362 - 1.5797 1.00 4857 141 0.1709 0.2091 REMARK 3 11 1.5797 - 1.5303 1.00 4878 139 0.1810 0.2194 REMARK 3 12 1.5303 - 1.4866 1.00 4877 140 0.1912 0.2057 REMARK 3 13 1.4866 - 1.4474 1.00 4874 140 0.2036 0.2216 REMARK 3 14 1.4474 - 1.4121 1.00 4862 140 0.2204 0.2465 REMARK 3 15 1.4121 - 1.3800 1.00 4844 138 0.2463 0.3028 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.130 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 18.140 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 15.25 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 20.85 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.008 3227 REMARK 3 ANGLE : 0.976 4375 REMARK 3 CHIRALITY : 0.070 471 REMARK 3 PLANARITY : 0.006 569 REMARK 3 DIHEDRAL : 14.582 1183 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: (CHAIN 'A' AND RESID 24 THROUGH 220) REMARK 3 ORIGIN FOR THE GROUP (A): 43.2458 219.7055-192.6988 REMARK 3 T TENSOR REMARK 3 T11: 0.0968 T22: 0.0766 REMARK 3 T33: 0.0804 T12: -0.0058 REMARK 3 T13: -0.0051 T23: -0.0086 REMARK 3 L TENSOR REMARK 3 L11: 1.0236 L22: 0.6023 REMARK 3 L33: 1.2729 L12: 0.0414 REMARK 3 L13: 0.0397 L23: -0.0460 REMARK 3 S TENSOR REMARK 3 S11: -0.0076 S12: -0.0309 S13: 0.0392 REMARK 3 S21: -0.0242 S22: 0.0211 S23: -0.0098 REMARK 3 S31: -0.0018 S32: 0.0316 S33: -0.0093 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: (CHAIN 'B' AND RESID 27 THROUGH 220) REMARK 3 ORIGIN FOR THE GROUP (A): 42.7393 255.2581-188.8264 REMARK 3 T TENSOR REMARK 3 T11: 0.1021 T22: 0.0793 REMARK 3 T33: 0.0759 T12: -0.0077 REMARK 3 T13: -0.0161 T23: -0.0056 REMARK 3 L TENSOR REMARK 3 L11: 1.3213 L22: 0.7951 REMARK 3 L33: 1.3394 L12: 0.0201 REMARK 3 L13: -0.3360 L23: 0.1121 REMARK 3 S TENSOR REMARK 3 S11: -0.0046 S12: -0.0107 S13: 0.0673 REMARK 3 S21: -0.0176 S22: 0.0309 S23: -0.0397 REMARK 3 S31: -0.0125 S32: 0.0247 S33: -0.0174 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : 1 REMARK 3 NCS GROUP : 1 REMARK 3 NCS OPERATOR : 1 REMARK 3 REFERENCE SELECTION: (CHAIN A AND (RESSEQ 28 OR RESSEQ 30:31 REMARK 3 OR RESSEQ 33:100 OR RESSEQ 102:118 OR REMARK 3 RESSEQ 120:140 OR RESSEQ 142:153 OR REMARK 3 RESSEQ 155:157 OR RESSEQ 159 OR (RESID REMARK 3 160 AND (NAME O OR NAME N OR NAME CA OR REMARK 3 NAME C )) OR RESSEQ 161:163 OR RESSEQ 165: REMARK 3 189 OR RESSEQ 191:201 OR RESSEQ 203:205 REMARK 3 OR RESSEQ 207:220)) REMARK 3 SELECTION : (CHAIN B AND (RESSEQ 28 OR RESSEQ 30:31 REMARK 3 OR RESSEQ 33:100 OR RESSEQ 102:118 OR REMARK 3 RESSEQ 120:140 OR RESSEQ 142:153 OR REMARK 3 RESSEQ 155:157 OR RESSEQ 159 OR (RESID REMARK 3 160 AND (NAME N OR NAME CA OR NAME C OR REMARK 3 NAME CB )) OR RESSEQ 161:163 OR RESSEQ REMARK 3 165:189 OR RESSEQ 191:201 OR RESSEQ 203: REMARK 3 205 OR RESSEQ 207:220)) REMARK 3 ATOM PAIRS NUMBER : 2112 REMARK 3 RMSD : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5N12 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 05-FEB-17. REMARK 100 THE DEPOSITION ID IS D_1200003385. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 13-DEC-16 REMARK 200 TEMPERATURE (KELVIN) : 80 REMARK 200 PH : 7.5 - 9.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID29 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.976 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M-F REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 76075 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.380 REMARK 200 RESOLUTION RANGE LOW (A) : 45.530 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 6.500 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 14.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 5A0P REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 40.88 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.08 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PROTEIN TO PRECIPITANT SOLUTION: 1.5 REMARK 280 MICROL:1.5 MICROL PROTEIN: 12 MG ML 20 MM TRIS PH 7.5 200 MM REMARK 280 NACL PRECIPITANT SOLUTION: 0.1 M TRIS PH 8.5 2.0 M AMMONIUM REMARK 280 PHOSPHATE DIBASIC, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE REMARK 280 293.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 21.58450 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 58.89900 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 35.88450 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 58.89900 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 21.58450 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 35.88450 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER B 24 REMARK 465 HIS B 25 REMARK 465 MET B 26 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH B 423 O HOH B 499 1.97 REMARK 500 O HOH A 476 O HOH A 498 1.99 REMARK 500 O HOH A 602 O HOH B 523 2.08 REMARK 500 ND2 ASN A 154 O HOH A 401 2.09 REMARK 500 O HOH A 610 O HOH A 630 2.12 REMARK 500 O HOH B 538 O HOH B 557 2.13 REMARK 500 O HOH B 407 O HOH B 435 2.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 565 O HOH B 598 3741 1.87 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 TYR A 178 -73.09 -126.11 REMARK 500 TYR B 178 -71.34 -127.68 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 301 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 142 NE2 REMARK 620 2 HIS A 146 NE2 93.9 REMARK 620 3 GLU A 185 OE1 96.5 96.0 REMARK 620 4 TRS A 303 N 98.7 164.3 92.0 REMARK 620 5 TRS A 303 O2 97.4 92.1 163.4 76.9 REMARK 620 6 TRS A 303 O3 166.3 91.8 95.3 74.0 69.9 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 301 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS B 142 NE2 REMARK 620 2 HIS B 146 NE2 95.7 REMARK 620 3 GLU B 185 OE1 98.7 97.6 REMARK 620 4 TRS B 304 N 102.3 159.2 90.1 REMARK 620 5 TRS B 304 O2 96.9 90.2 161.8 77.4 REMARK 620 6 TRS B 304 O3 168.1 88.4 91.8 72.0 71.8 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 8FH A 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue TRS A 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN B 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 8FH B 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 8FH B 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue TRS B 304 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5A0P RELATED DB: PDB REMARK 900 5A0P IS THE SAME CRYSTAL BUT NOT TREATED WITH TCE DBREF 5N12 A 27 220 UNP Q183R7 ZMP1_PEPD6 27 220 DBREF 5N12 B 27 220 UNP Q183R7 ZMP1_PEPD6 27 220 SEQADV 5N12 SER A 24 UNP Q183R7 EXPRESSION TAG SEQADV 5N12 HIS A 25 UNP Q183R7 EXPRESSION TAG SEQADV 5N12 MET A 26 UNP Q183R7 EXPRESSION TAG SEQADV 5N12 SER B 24 UNP Q183R7 EXPRESSION TAG SEQADV 5N12 HIS B 25 UNP Q183R7 EXPRESSION TAG SEQADV 5N12 MET B 26 UNP Q183R7 EXPRESSION TAG SEQRES 1 A 197 SER HIS MET ASP SER THR THR ILE GLN GLN ASN LYS ASP SEQRES 2 A 197 THR LEU SER GLN ILE VAL VAL PHE PRO THR GLY ASN TYR SEQRES 3 A 197 ASP LYS ASN GLU ALA ASN ALA MET VAL ASN ARG LEU ALA SEQRES 4 A 197 ASN ILE ASP GLY LYS TYR LEU ASN ALA LEU LYS GLN ASN SEQRES 5 A 197 ASN LEU LYS ILE LYS LEU LEU SER GLY LYS LEU THR ASP SEQRES 6 A 197 GLU LYS GLU TYR ALA TYR LEU LYS GLY VAL VAL PRO LYS SEQRES 7 A 197 GLY TRP GLU GLY THR GLY LYS THR TRP ASP ASP VAL PRO SEQRES 8 A 197 GLY LEU GLY GLY SER THR VAL ALA LEU ARG ILE GLY PHE SEQRES 9 A 197 SER ASN LYS GLY LYS GLY HIS ASP ALA ILE ASN LEU GLU SEQRES 10 A 197 LEU HIS GLU THR ALA HIS ALA ILE ASP HIS ILE VAL LEU SEQRES 11 A 197 ASN ASP ILE SER LYS SER ALA GLN PHE LYS GLN ILE PHE SEQRES 12 A 197 ALA LYS GLU GLY ARG SER LEU GLY ASN VAL ASN TYR LEU SEQRES 13 A 197 GLY VAL TYR PRO GLU GLU PHE PHE ALA GLU SER PHE ALA SEQRES 14 A 197 TYR TYR TYR LEU ASN GLN ASP THR ASN SER LYS LEU LYS SEQRES 15 A 197 SER ALA CYS PRO GLN THR TYR SER PHE LEU GLN ASN LEU SEQRES 16 A 197 ALA LYS SEQRES 1 B 197 SER HIS MET ASP SER THR THR ILE GLN GLN ASN LYS ASP SEQRES 2 B 197 THR LEU SER GLN ILE VAL VAL PHE PRO THR GLY ASN TYR SEQRES 3 B 197 ASP LYS ASN GLU ALA ASN ALA MET VAL ASN ARG LEU ALA SEQRES 4 B 197 ASN ILE ASP GLY LYS TYR LEU ASN ALA LEU LYS GLN ASN SEQRES 5 B 197 ASN LEU LYS ILE LYS LEU LEU SER GLY LYS LEU THR ASP SEQRES 6 B 197 GLU LYS GLU TYR ALA TYR LEU LYS GLY VAL VAL PRO LYS SEQRES 7 B 197 GLY TRP GLU GLY THR GLY LYS THR TRP ASP ASP VAL PRO SEQRES 8 B 197 GLY LEU GLY GLY SER THR VAL ALA LEU ARG ILE GLY PHE SEQRES 9 B 197 SER ASN LYS GLY LYS GLY HIS ASP ALA ILE ASN LEU GLU SEQRES 10 B 197 LEU HIS GLU THR ALA HIS ALA ILE ASP HIS ILE VAL LEU SEQRES 11 B 197 ASN ASP ILE SER LYS SER ALA GLN PHE LYS GLN ILE PHE SEQRES 12 B 197 ALA LYS GLU GLY ARG SER LEU GLY ASN VAL ASN TYR LEU SEQRES 13 B 197 GLY VAL TYR PRO GLU GLU PHE PHE ALA GLU SER PHE ALA SEQRES 14 B 197 TYR TYR TYR LEU ASN GLN ASP THR ASN SER LYS LEU LYS SEQRES 15 B 197 SER ALA CYS PRO GLN THR TYR SER PHE LEU GLN ASN LEU SEQRES 16 B 197 ALA LYS HET ZN A 301 1 HET 8FH A 302 9 HET TRS A 303 19 HET ZN B 301 1 HET 8FH B 302 9 HET 8FH B 303 9 HET TRS B 304 19 HETNAM ZN ZINC ION HETNAM 8FH 2,2,2-TRIS-CHLOROETHANOL HETNAM TRS 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL HETSYN TRS TRIS BUFFER FORMUL 3 ZN 2(ZN 2+) FORMUL 4 8FH 3(C2 H3 CL3 O) FORMUL 5 TRS 2(C4 H12 N O3 1+) FORMUL 10 HOH *451(H2 O) HELIX 1 AA1 MET A 26 GLN A 40 1 15 HELIX 2 AA2 ASP A 50 ALA A 62 1 13 HELIX 3 AA3 ASP A 65 ASN A 75 1 11 HELIX 4 AA4 LYS A 85 LYS A 96 5 12 HELIX 5 AA5 THR A 109 VAL A 113 5 5 HELIX 6 AA6 ASN A 138 VAL A 152 1 15 HELIX 7 AA7 ASP A 155 LYS A 158 5 4 HELIX 8 AA8 SER A 159 GLY A 170 1 12 HELIX 9 AA9 TYR A 182 ASN A 197 1 16 HELIX 10 AB1 ASN A 197 CYS A 208 1 12 HELIX 11 AB2 CYS A 208 LYS A 220 1 13 HELIX 12 AB3 SER B 28 SER B 39 1 12 HELIX 13 AB4 ASP B 50 ALA B 62 1 13 HELIX 14 AB5 ASP B 65 ASN B 75 1 11 HELIX 15 AB6 LYS B 85 LYS B 96 5 12 HELIX 16 AB7 THR B 109 VAL B 113 5 5 HELIX 17 AB8 ASN B 138 VAL B 152 1 15 HELIX 18 AB9 ASP B 155 LYS B 158 5 4 HELIX 19 AC1 SER B 159 GLY B 170 1 12 HELIX 20 AC2 TYR B 182 ASN B 197 1 16 HELIX 21 AC3 ASN B 197 CYS B 208 1 12 HELIX 22 AC4 CYS B 208 ALA B 219 1 12 SHEET 1 AA1 4 VAL A 42 VAL A 43 0 SHEET 2 AA1 4 ILE A 79 LEU A 82 1 O ILE A 79 N VAL A 43 SHEET 3 AA1 4 VAL A 121 ARG A 124 1 O LEU A 123 N LEU A 82 SHEET 4 AA1 4 GLY A 115 GLY A 117 -1 N LEU A 116 O ALA A 122 SHEET 1 AA2 4 VAL B 42 VAL B 43 0 SHEET 2 AA2 4 ILE B 79 LEU B 82 1 O ILE B 79 N VAL B 43 SHEET 3 AA2 4 VAL B 121 ARG B 124 1 O LEU B 123 N LEU B 82 SHEET 4 AA2 4 GLY B 115 GLY B 117 -1 N LEU B 116 O ALA B 122 LINK NE2 HIS A 142 ZN ZN A 301 1555 1555 2.08 LINK NE2 HIS A 146 ZN ZN A 301 1555 1555 2.08 LINK OE1 GLU A 185 ZN ZN A 301 1555 1555 2.07 LINK ZN ZN A 301 N TRS A 303 1555 1555 2.09 LINK ZN ZN A 301 O2 TRS A 303 1555 1555 2.25 LINK ZN ZN A 301 O3 TRS A 303 1555 1555 2.31 LINK NE2 HIS B 142 ZN ZN B 301 1555 1555 2.06 LINK NE2 HIS B 146 ZN ZN B 301 1555 1555 2.05 LINK OE1 GLU B 185 ZN ZN B 301 1555 1555 1.99 LINK ZN ZN B 301 N TRS B 304 1555 1555 2.07 LINK ZN ZN B 301 O2 TRS B 304 1555 1555 2.18 LINK ZN ZN B 301 O3 TRS B 304 1555 1555 2.44 SITE 1 AC1 4 HIS A 142 HIS A 146 GLU A 185 TRS A 303 SITE 1 AC2 6 LYS A 35 PHE A 44 ASN A 55 VAL A 58 SITE 2 AC2 6 HOH A 436 HOH A 469 SITE 1 AC3 9 HIS A 142 GLU A 143 HIS A 146 TYR A 178 SITE 2 AC3 9 GLU A 185 ZN A 301 HOH A 486 HOH A 501 SITE 3 AC3 9 HOH A 504 SITE 1 AC4 4 HIS B 142 HIS B 146 GLU B 185 TRS B 304 SITE 1 AC5 4 LYS B 35 PHE B 44 ASN B 55 VAL B 58 SITE 1 AC6 5 SER B 39 GLN B 40 VAL B 42 HOH B 455 SITE 2 AC6 5 HOH B 543 SITE 1 AC7 11 HIS A 25 HIS B 142 GLU B 143 HIS B 146 SITE 2 AC7 11 TYR B 178 GLU B 185 ZN B 301 HOH B 424 SITE 3 AC7 11 HOH B 458 HOH B 534 HOH B 551 CRYST1 43.169 71.769 117.798 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.023165 0.000000 0.000000 0.00000 SCALE2 0.000000 0.013934 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008489 0.00000