HEADER TRANSFERASE 06-FEB-17 5N1D TITLE CAMP-DEPENDENT PROTEIN KINASE A FROM CRICETULUS GRISEUS IN COMPLEX TITLE 2 WITH FRAGMENT LIKE MOLECULE N-METHYL-1-(5-PYRIDIN-3-YLOXYFURAN-2-YL) TITLE 3 METHANAMINE COMPND MOL_ID: 1; COMPND 2 MOLECULE: CAMP-DEPENDENT PROTEIN KINASE CATALYTIC SUBUNIT ALPHA; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: PKA C-ALPHA; COMPND 5 EC: 2.7.11.11; COMPND 6 ENGINEERED: YES; COMPND 7 OTHER_DETAILS: PHOSPHORYLATION OF S11, T198 AND S339; COMPND 8 MOL_ID: 2; COMPND 9 MOLECULE: CAMP-DEPENDENT PROTEIN KINASE INHIBITOR ALPHA-LIKE PROTEIN; COMPND 10 CHAIN: B; COMPND 11 ENGINEERED: YES; COMPND 12 OTHER_DETAILS: CAMP DEPENDENT PROTEIN KINASE INHIBITOR PEPTIDE SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: CRICETULUS GRISEUS; SOURCE 3 ORGANISM_COMMON: CHINESE HAMSTER; SOURCE 4 ORGANISM_TAXID: 10029; SOURCE 5 GENE: PRKACA; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_VARIANT: PLYSS; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET-16BTEV; SOURCE 11 MOL_ID: 2; SOURCE 12 SYNTHETIC: YES; SOURCE 13 ORGANISM_SCIENTIFIC: CRICETULUS GRISEUS; SOURCE 14 ORGANISM_COMMON: CHINESE HAMSTER; SOURCE 15 ORGANISM_TAXID: 10029 KEYWDS FRAGMENT, COMPLEX, TRANSFERASE, SERINE THREONINE KINASE, CAMP, KEYWDS 2 KINASE, PKA EXPDTA X-RAY DIFFRACTION AUTHOR C.SIEFKER,A.HEINE,G.KLEBE REVDAT 2 17-JAN-24 5N1D 1 REMARK REVDAT 1 28-FEB-18 5N1D 0 JRNL AUTH C.SIEFKER,A.HEINE,G.KLEBE JRNL TITL A CRYSTALLOGRAPHIC FRAGMENT STUDY WITH CAMP-DEPENDENT JRNL TITL 2 PROTEIN KINASE A JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.61 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.10.1_2155: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.61 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 45.82 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.360 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 3 NUMBER OF REFLECTIONS : 61267 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.157 REMARK 3 R VALUE (WORKING SET) : 0.155 REMARK 3 FREE R VALUE : 0.186 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 3064 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 45.8333 - 4.5081 0.99 2846 150 0.1656 0.1966 REMARK 3 2 4.5081 - 3.5786 1.00 2739 145 0.1385 0.1633 REMARK 3 3 3.5786 - 3.1264 1.00 2695 141 0.1537 0.1682 REMARK 3 4 3.1264 - 2.8406 1.00 2701 143 0.1530 0.1946 REMARK 3 5 2.8406 - 2.6370 1.00 2673 140 0.1523 0.1896 REMARK 3 6 2.6370 - 2.4815 1.00 2657 140 0.1418 0.1834 REMARK 3 7 2.4815 - 2.3573 1.00 2646 139 0.1400 0.1559 REMARK 3 8 2.3573 - 2.2547 1.00 2643 140 0.1376 0.1498 REMARK 3 9 2.2547 - 2.1679 1.00 2643 139 0.1415 0.1780 REMARK 3 10 2.1679 - 2.0931 1.00 2632 138 0.1477 0.1786 REMARK 3 11 2.0931 - 2.0276 1.00 2640 139 0.1571 0.2146 REMARK 3 12 2.0276 - 1.9697 1.00 2639 139 0.1569 0.1757 REMARK 3 13 1.9697 - 1.9178 0.99 2618 138 0.1681 0.2142 REMARK 3 14 1.9178 - 1.8710 0.99 2619 138 0.1627 0.1924 REMARK 3 15 1.8710 - 1.8285 1.00 2621 138 0.1625 0.2112 REMARK 3 16 1.8285 - 1.7896 1.00 2610 137 0.1660 0.1882 REMARK 3 17 1.7896 - 1.7538 0.99 2601 137 0.1692 0.1907 REMARK 3 18 1.7538 - 1.7207 0.99 2634 138 0.1783 0.2010 REMARK 3 19 1.7207 - 1.6899 0.99 2584 137 0.1850 0.2134 REMARK 3 20 1.6899 - 1.6613 0.99 2609 137 0.2029 0.2810 REMARK 3 21 1.6613 - 1.6345 0.99 2602 137 0.2114 0.2371 REMARK 3 22 1.6345 - 1.6093 0.96 2551 134 0.2293 0.2453 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.150 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 16.620 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.017 3226 REMARK 3 ANGLE : 1.475 4393 REMARK 3 CHIRALITY : 0.079 462 REMARK 3 PLANARITY : 0.011 583 REMARK 3 DIHEDRAL : 15.687 1947 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 9 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID -2 THROUGH 31 ) REMARK 3 ORIGIN FOR THE GROUP (A): 9.6578 82.0052 1.5695 REMARK 3 T TENSOR REMARK 3 T11: 0.1660 T22: 0.2194 REMARK 3 T33: 0.1805 T12: 0.0429 REMARK 3 T13: 0.0159 T23: 0.0073 REMARK 3 L TENSOR REMARK 3 L11: 0.5297 L22: 0.6261 REMARK 3 L33: 0.1710 L12: 0.2540 REMARK 3 L13: -0.2292 L23: 0.0873 REMARK 3 S TENSOR REMARK 3 S11: 0.0818 S12: 0.2757 S13: -0.2315 REMARK 3 S21: -0.0759 S22: -0.0044 S23: 0.0710 REMARK 3 S31: 0.2564 S32: -0.0608 S33: -0.0129 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 32 THROUGH 67 ) REMARK 3 ORIGIN FOR THE GROUP (A): 25.8387 97.6520 30.1300 REMARK 3 T TENSOR REMARK 3 T11: 0.2096 T22: 0.2846 REMARK 3 T33: 0.3605 T12: 0.0102 REMARK 3 T13: -0.0374 T23: -0.0629 REMARK 3 L TENSOR REMARK 3 L11: 0.1339 L22: 1.3549 REMARK 3 L33: 0.4324 L12: 0.3082 REMARK 3 L13: -0.0007 L23: -0.5630 REMARK 3 S TENSOR REMARK 3 S11: 0.2448 S12: -0.4217 S13: -0.0482 REMARK 3 S21: 0.6304 S22: -0.1138 S23: -0.4801 REMARK 3 S31: -0.0529 S32: 0.1308 S33: 0.0756 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 68 THROUGH 97 ) REMARK 3 ORIGIN FOR THE GROUP (A): 16.9232 86.8343 31.6516 REMARK 3 T TENSOR REMARK 3 T11: 0.2718 T22: 0.2754 REMARK 3 T33: 0.1580 T12: -0.0520 REMARK 3 T13: -0.0255 T23: 0.0085 REMARK 3 L TENSOR REMARK 3 L11: 0.2815 L22: 0.4768 REMARK 3 L33: 0.0158 L12: -0.1069 REMARK 3 L13: 0.0651 L23: -0.0705 REMARK 3 S TENSOR REMARK 3 S11: 0.1827 S12: -0.2835 S13: -0.0526 REMARK 3 S21: 0.5133 S22: -0.0979 S23: -0.0851 REMARK 3 S31: 0.0285 S32: 0.0841 S33: 0.0103 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 98 THROUGH 179 ) REMARK 3 ORIGIN FOR THE GROUP (A): 10.8108 96.0271 18.8842 REMARK 3 T TENSOR REMARK 3 T11: 0.1183 T22: 0.1169 REMARK 3 T33: 0.1229 T12: -0.0082 REMARK 3 T13: -0.0095 T23: -0.0080 REMARK 3 L TENSOR REMARK 3 L11: 0.7142 L22: 0.6592 REMARK 3 L33: 0.1573 L12: -0.1240 REMARK 3 L13: -0.0891 L23: 0.0816 REMARK 3 S TENSOR REMARK 3 S11: 0.0336 S12: -0.0639 S13: 0.1063 REMARK 3 S21: 0.0657 S22: -0.0294 S23: -0.1147 REMARK 3 S31: -0.0157 S32: 0.0854 S33: -0.0003 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 180 THROUGH 198 ) REMARK 3 ORIGIN FOR THE GROUP (A): 6.0118 82.0650 22.9166 REMARK 3 T TENSOR REMARK 3 T11: 0.1870 T22: 0.1566 REMARK 3 T33: 0.1375 T12: 0.0112 REMARK 3 T13: 0.0077 T23: 0.0327 REMARK 3 L TENSOR REMARK 3 L11: 0.2791 L22: 0.1044 REMARK 3 L33: 0.3492 L12: -0.0150 REMARK 3 L13: -0.3056 L23: -0.0797 REMARK 3 S TENSOR REMARK 3 S11: 0.0655 S12: -0.1430 S13: -0.0423 REMARK 3 S21: 0.1213 S22: -0.0490 S23: -0.0904 REMARK 3 S31: 0.0521 S32: 0.2233 S33: 0.0645 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 199 THROUGH 316 ) REMARK 3 ORIGIN FOR THE GROUP (A): -5.1463 92.2911 14.8132 REMARK 3 T TENSOR REMARK 3 T11: 0.1003 T22: 0.0884 REMARK 3 T33: 0.1060 T12: -0.0087 REMARK 3 T13: -0.0055 T23: -0.0018 REMARK 3 L TENSOR REMARK 3 L11: 1.0564 L22: 1.0381 REMARK 3 L33: 0.8780 L12: -0.1284 REMARK 3 L13: -0.0968 L23: 0.0439 REMARK 3 S TENSOR REMARK 3 S11: -0.0030 S12: 0.0459 S13: -0.0506 REMARK 3 S21: 0.0174 S22: -0.0353 S23: 0.0793 REMARK 3 S31: 0.0595 S32: -0.1064 S33: -0.1087 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 317 THROUGH 350 ) REMARK 3 ORIGIN FOR THE GROUP (A): 20.4124 95.4878 34.2347 REMARK 3 T TENSOR REMARK 3 T11: 0.3143 T22: 0.3431 REMARK 3 T33: 0.2727 T12: -0.0111 REMARK 3 T13: -0.0267 T23: -0.0182 REMARK 3 L TENSOR REMARK 3 L11: 0.7447 L22: 0.9825 REMARK 3 L33: 0.1430 L12: 0.4288 REMARK 3 L13: 0.3524 L23: 0.0230 REMARK 3 S TENSOR REMARK 3 S11: 0.0678 S12: -0.3745 S13: 0.0921 REMARK 3 S21: 0.8309 S22: -0.0621 S23: -0.1469 REMARK 3 S31: -0.1993 S32: -0.1458 S33: 0.0202 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 5 THROUGH 12 ) REMARK 3 ORIGIN FOR THE GROUP (A): -11.9526 107.6440 26.4047 REMARK 3 T TENSOR REMARK 3 T11: 0.1928 T22: 0.1899 REMARK 3 T33: 0.1850 T12: 0.0250 REMARK 3 T13: -0.0029 T23: -0.0424 REMARK 3 L TENSOR REMARK 3 L11: 0.0094 L22: 0.0166 REMARK 3 L33: 0.0254 L12: -0.0030 REMARK 3 L13: 0.0130 L23: 0.0037 REMARK 3 S TENSOR REMARK 3 S11: 0.1192 S12: -0.1273 S13: 0.0660 REMARK 3 S21: 0.1343 S22: 0.0423 S23: 0.1235 REMARK 3 S31: -0.1782 S32: -0.1158 S33: -0.0000 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 13 THROUGH 22 ) REMARK 3 ORIGIN FOR THE GROUP (A): -1.5632 99.0596 31.3126 REMARK 3 T TENSOR REMARK 3 T11: 0.2576 T22: 0.1645 REMARK 3 T33: 0.1247 T12: -0.0158 REMARK 3 T13: -0.0057 T23: -0.0367 REMARK 3 L TENSOR REMARK 3 L11: 0.7070 L22: 0.1507 REMARK 3 L33: 0.0509 L12: -0.1259 REMARK 3 L13: -0.1730 L23: 0.0116 REMARK 3 S TENSOR REMARK 3 S11: 0.2577 S12: -0.2293 S13: 0.1108 REMARK 3 S21: 0.2634 S22: -0.1322 S23: -0.1387 REMARK 3 S31: 0.0869 S32: 0.0835 S33: 0.0628 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5N1D COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 06-FEB-17. REMARK 100 THE DEPOSITION ID IS D_1200003143. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 18-JUL-15 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.9 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : BESSY REMARK 200 BEAMLINE : 14.1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.918409 REMARK 200 MONOCHROMATOR : SI-111 CRYSTAL MONOCHROMATOR REMARK 200 OPTICS : SILICON, ACTIVE SURFACE REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 61272 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.610 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 200 DATA REDUNDANCY : 4.790 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 17.2300 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.61 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.71 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.5 REMARK 200 DATA REDUNDANCY IN SHELL : 4.61 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 4WIH REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 57.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.88 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: MES-BIS-TRIS MEGA8-SOLUTION DTT EDTA REMARK 280 LICL METHANOL, PH 6.9, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 29.30600 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 54.35150 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 36.72800 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 54.35150 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 29.30600 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 36.72800 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2400 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 16890 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -29.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A 34 REMARK 465 GLN A 35 REMARK 465 HIS B 23 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 21 CD CE NZ REMARK 470 LYS A 28 CD CE NZ REMARK 470 LYS A 29 CE NZ REMARK 470 SER A 32 OG REMARK 470 ASN A 36 CG OD1 ND2 REMARK 470 SER A 53 OG REMARK 470 PHE A 54 CZ REMARK 470 LYS A 61 NZ REMARK 470 LYS A 78 CE NZ REMARK 470 LYS A 81 CG CD CE NZ REMARK 470 LEU A 82 CD1 CD2 REMARK 470 LYS A 83 CE NZ REMARK 470 LYS A 192 CG CD CE NZ REMARK 470 ASP A 241 OD1 OD2 REMARK 470 LYS A 254 NZ REMARK 470 LYS A 285 CD CE NZ REMARK 470 LYS A 317 CD CE NZ REMARK 470 LYS A 319 CG CD CE NZ REMARK 470 GLU A 331 CG CD OE1 OE2 REMARK 470 GLU A 333 CG CD OE1 OE2 REMARK 470 GLU A 334 CG CD OE1 OE2 REMARK 470 ILE A 335 CD1 REMARK 470 ARG A 336 CG CD NE CZ NH1 NH2 REMARK 470 ILE A 339 CD1 REMARK 470 LYS A 345 CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 HZ3 LYS A 76 O HOH A 503 1.58 REMARK 500 HZ2 LYS A 217 O HOH A 501 1.60 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 137 NE - CZ - NH1 ANGL. DEV. = 4.8 DEGREES REMARK 500 ARG A 137 NE - CZ - NH2 ANGL. DEV. = -6.0 DEGREES REMARK 500 ASP A 166 CB - CG - OD1 ANGL. DEV. = -7.7 DEGREES REMARK 500 ARG A 280 NE - CZ - NH2 ANGL. DEV. = -3.1 DEGREES REMARK 500 ARG A 308 NE - CZ - NH1 ANGL. DEV. = -3.6 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 38 -172.71 -174.99 REMARK 500 ASP A 166 50.82 -147.58 REMARK 500 LEU A 273 48.27 -86.07 REMARK 500 ARG B 15 47.39 -103.87 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 VAL A 191 LYS A 192 33.72 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 863 DISTANCE = 5.94 ANGSTROMS REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MPD A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MPD A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 8FZ A 403 DBREF 5N1D A 0 350 UNP P25321 KAPCA_CRIGR 1 351 DBREF1 5N1D B 5 23 UNP A0A061IH64_CRIGR DBREF2 5N1D B A0A061IH64 6 24 SEQADV 5N1D GLY A -2 UNP P25321 EXPRESSION TAG SEQADV 5N1D HIS A -1 UNP P25321 EXPRESSION TAG SEQRES 1 A 353 GLY HIS MET GLY ASN ALA ALA ALA ALA LYS LYS GLY SEP SEQRES 2 A 353 GLU GLN GLU SER VAL LYS GLU PHE LEU ALA LYS ALA LYS SEQRES 3 A 353 GLU GLU PHE LEU LYS LYS TRP GLU SER PRO SER GLN ASN SEQRES 4 A 353 THR ALA GLN LEU ASP HIS PHE ASP ARG ILE LYS THR LEU SEQRES 5 A 353 GLY THR GLY SER PHE GLY ARG VAL MET LEU VAL LYS HIS SEQRES 6 A 353 LYS GLU THR GLY ASN HIS TYR ALA MET LYS ILE LEU ASP SEQRES 7 A 353 LYS GLN LYS VAL VAL LYS LEU LYS GLN ILE GLU HIS THR SEQRES 8 A 353 LEU ASN GLU LYS ARG ILE LEU GLN ALA VAL ASN PHE PRO SEQRES 9 A 353 PHE LEU VAL LYS LEU GLU PHE SER PHE LYS ASP ASN SER SEQRES 10 A 353 ASN LEU TYR MET VAL MET GLU TYR VAL PRO GLY GLY GLU SEQRES 11 A 353 MET PHE SER HIS LEU ARG ARG ILE GLY ARG PHE SER GLU SEQRES 12 A 353 PRO HIS ALA ARG PHE TYR ALA ALA GLN ILE VAL LEU THR SEQRES 13 A 353 PHE GLU TYR LEU HIS SER LEU ASP LEU ILE TYR ARG ASP SEQRES 14 A 353 LEU LYS PRO GLU ASN LEU LEU ILE ASP GLN GLN GLY TYR SEQRES 15 A 353 ILE GLN VAL THR ASP PHE GLY PHE ALA LYS ARG VAL LYS SEQRES 16 A 353 GLY ARG THR TRP TPO LEU CYS GLY THR PRO GLU TYR LEU SEQRES 17 A 353 ALA PRO GLU ILE ILE LEU SER LYS GLY TYR ASN LYS ALA SEQRES 18 A 353 VAL ASP TRP TRP ALA LEU GLY VAL LEU ILE TYR GLU MET SEQRES 19 A 353 ALA ALA GLY TYR PRO PRO PHE PHE ALA ASP GLN PRO ILE SEQRES 20 A 353 GLN ILE TYR GLU LYS ILE VAL SER GLY LYS VAL ARG PHE SEQRES 21 A 353 PRO SER HIS PHE SER SER ASP LEU LYS ASP LEU LEU ARG SEQRES 22 A 353 ASN LEU LEU GLN VAL ASP LEU THR LYS ARG PHE GLY ASN SEQRES 23 A 353 LEU LYS ASN GLY VAL ASN ASP ILE LYS ASN HIS LYS TRP SEQRES 24 A 353 PHE ALA THR THR ASP TRP ILE ALA ILE TYR GLN ARG LYS SEQRES 25 A 353 VAL GLU ALA PRO PHE ILE PRO LYS PHE LYS GLY PRO GLY SEQRES 26 A 353 ASP THR SER ASN PHE ASP ASP TYR GLU GLU GLU GLU ILE SEQRES 27 A 353 ARG VAL SEP ILE ASN GLU LYS CYS GLY LYS GLU PHE THR SEQRES 28 A 353 GLU PHE SEQRES 1 B 19 THR THR TYR ALA ASP PHE ILE ALA SER GLY ARG THR GLY SEQRES 2 B 19 ARG ARG ASN ALA ILE HIS MODRES 5N1D SEP A 10 SER MODIFIED RESIDUE MODRES 5N1D TPO A 197 THR MODIFIED RESIDUE MODRES 5N1D SEP A 338 SER MODIFIED RESIDUE HET SEP A 10 14 HET TPO A 197 17 HET SEP A 338 14 HET MPD A 401 22 HET MPD A 402 22 HET 8FZ A 403 22 HETNAM SEP PHOSPHOSERINE HETNAM TPO PHOSPHOTHREONINE HETNAM MPD (4S)-2-METHYL-2,4-PENTANEDIOL HETNAM 8FZ (5-PYRIDIN-3-YLOXYFURAN-2-YL)METHANAMINE HETSYN SEP PHOSPHONOSERINE HETSYN TPO PHOSPHONOTHREONINE FORMUL 1 SEP 2(C3 H8 N O6 P) FORMUL 1 TPO C4 H10 N O6 P FORMUL 3 MPD 2(C6 H14 O2) FORMUL 5 8FZ C10 H10 N2 O2 FORMUL 6 HOH *392(H2 O) HELIX 1 AA1 GLY A 1 SER A 32 1 32 HELIX 2 AA2 GLN A 39 ASP A 41 5 3 HELIX 3 AA3 LYS A 76 LEU A 82 1 7 HELIX 4 AA4 GLN A 84 VAL A 98 1 15 HELIX 5 AA5 GLU A 127 GLY A 136 1 10 HELIX 6 AA6 SER A 139 LEU A 160 1 22 HELIX 7 AA7 LYS A 168 GLU A 170 5 3 HELIX 8 AA8 THR A 201 LEU A 205 5 5 HELIX 9 AA9 ALA A 206 LEU A 211 1 6 HELIX 10 AB1 LYS A 217 GLY A 234 1 18 HELIX 11 AB2 GLN A 242 SER A 252 1 11 HELIX 12 AB3 SER A 262 LEU A 273 1 12 HELIX 13 AB4 ASP A 276 ARG A 280 5 5 HELIX 14 AB5 VAL A 288 ASN A 293 1 6 HELIX 15 AB6 HIS A 294 ALA A 298 5 5 HELIX 16 AB7 ASP A 301 GLN A 307 1 7 HELIX 17 AB8 THR B 6 SER B 13 1 8 SHEET 1 AA1 5 PHE A 43 THR A 51 0 SHEET 2 AA1 5 GLY A 55 HIS A 62 -1 O LEU A 59 N LYS A 47 SHEET 3 AA1 5 HIS A 68 ASP A 75 -1 O MET A 71 N MET A 58 SHEET 4 AA1 5 ASN A 115 GLU A 121 -1 O MET A 120 N ALA A 70 SHEET 5 AA1 5 LEU A 106 LYS A 111 -1 N PHE A 110 O TYR A 117 SHEET 1 AA2 2 LEU A 162 ILE A 163 0 SHEET 2 AA2 2 LYS A 189 ARG A 190 -1 O LYS A 189 N ILE A 163 SHEET 1 AA3 2 LEU A 172 ILE A 174 0 SHEET 2 AA3 2 ILE A 180 VAL A 182 -1 O GLN A 181 N LEU A 173 LINK C GLY A 9 N SEP A 10 1555 1555 1.30 LINK C SEP A 10 N GLU A 11 1555 1555 1.32 LINK C TRP A 196 N TPO A 197 1555 1555 1.34 LINK C TPO A 197 N LEU A 198 1555 1555 1.33 LINK C VAL A 337 N SEP A 338 1555 1555 1.33 LINK C SEP A 338 N ILE A 339 1555 1555 1.34 SITE 1 AC1 8 VAL A 15 PHE A 18 PHE A 100 LEU A 152 SITE 2 AC1 8 GLU A 155 TYR A 306 HOH A 659 HOH A 744 SITE 1 AC2 7 GLY A 136 ARG A 137 HOH A 553 HOH A 639 SITE 2 AC2 7 HOH A 655 HOH A 681 TYR B 7 SITE 1 AC3 10 LEU A 49 ALA A 70 GLU A 121 VAL A 123 SITE 2 AC3 10 GLU A 127 GLU A 170 LEU A 173 ASP A 184 SITE 3 AC3 10 PHE A 327 HOH A 756 CRYST1 58.612 73.456 108.703 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.017061 0.000000 0.000000 0.00000 SCALE2 0.000000 0.013614 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009199 0.00000