HEADER TRANSFERASE 06-FEB-17 5N1O TITLE CAMP-DEPENDENT PROTEIN KINASE A FROM CRICETULUS GRISEUS IN COMPLEX TITLE 2 WITH FRAGMENT LIKE MOLECULE 2-CHLORO-4-(CHLOROMETHYL)-5- TITLE 3 HYDROXYPHENYL)ETHAN-1-ONE COMPND MOL_ID: 1; COMPND 2 MOLECULE: CAMP-DEPENDENT PROTEIN KINASE CATALYTIC SUBUNIT ALPHA; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: PKA C-ALPHA; COMPND 5 EC: 2.7.11.11; COMPND 6 ENGINEERED: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: CAMP-DEPENDENT PROTEIN KINASE INHIBITOR ALPHA-LIKE PROTEIN; COMPND 9 CHAIN: B; COMPND 10 FRAGMENT: UNP RESIDUES 12-30; COMPND 11 ENGINEERED: YES; COMPND 12 OTHER_DETAILS: CAMP DEPENDENT PROTEIN KINASE INHIBITOR PEPTIDE SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: CRICETULUS GRISEUS; SOURCE 3 ORGANISM_COMMON: CHINESE HAMSTER; SOURCE 4 ORGANISM_TAXID: 10029; SOURCE 5 GENE: PRKACA; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_VARIANT: PLYSS; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET-16BTEV; SOURCE 11 MOL_ID: 2; SOURCE 12 SYNTHETIC: YES; SOURCE 13 ORGANISM_SCIENTIFIC: CRICETULUS GRISEUS; SOURCE 14 ORGANISM_COMMON: CHINESE HAMSTER; SOURCE 15 ORGANISM_TAXID: 10029 KEYWDS FRAGMENT, COMPLEX, TRANSFERASE, SERINE THREONINE KINASE, CAMP, KEYWDS 2 KINASE, PKA EXPDTA X-RAY DIFFRACTION AUTHOR C.SIEFKER,A.HEINE,G.KLEBE REVDAT 2 17-JAN-24 5N1O 1 REMARK REVDAT 1 28-FEB-18 5N1O 0 JRNL AUTH C.SIEFKER,A.HEINE,G.KLEBE JRNL TITL A CRYSTALLOGRAPHIC FRAGMENT STUDY WITH CAMP-DEPENDENT JRNL TITL 2 PROTEIN KINASE A JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.10.1_2155: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 45.65 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.370 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 3 NUMBER OF REFLECTIONS : 43878 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.172 REMARK 3 R VALUE (WORKING SET) : 0.171 REMARK 3 FREE R VALUE : 0.191 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 2195 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 45.6629 - 4.5236 1.00 2795 148 0.1839 0.1705 REMARK 3 2 4.5236 - 3.5909 1.00 2678 141 0.1523 0.1647 REMARK 3 3 3.5909 - 3.1371 1.00 2653 139 0.1741 0.2078 REMARK 3 4 3.1371 - 2.8504 1.00 2644 139 0.1740 0.2074 REMARK 3 5 2.8504 - 2.6461 1.00 2603 138 0.1733 0.2100 REMARK 3 6 2.6461 - 2.4901 1.00 2623 138 0.1671 0.1913 REMARK 3 7 2.4901 - 2.3654 1.00 2583 136 0.1576 0.1902 REMARK 3 8 2.3654 - 2.2624 1.00 2588 136 0.1573 0.1701 REMARK 3 9 2.2624 - 2.1753 1.00 2580 135 0.1585 0.2087 REMARK 3 10 2.1753 - 2.1003 1.00 2603 137 0.1674 0.1745 REMARK 3 11 2.1003 - 2.0346 1.00 2592 137 0.1681 0.2123 REMARK 3 12 2.0346 - 1.9764 1.00 2580 136 0.1756 0.2105 REMARK 3 13 1.9764 - 1.9244 1.00 2606 137 0.1823 0.2464 REMARK 3 14 1.9244 - 1.8774 1.00 2551 134 0.1936 0.2378 REMARK 3 15 1.8774 - 1.8348 1.00 2567 135 0.2099 0.2155 REMARK 3 16 1.8348 - 1.7957 0.95 2437 129 0.2462 0.2797 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.170 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 18.210 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.015 2909 REMARK 3 ANGLE : 1.287 3960 REMARK 3 CHIRALITY : 0.071 426 REMARK 3 PLANARITY : 0.010 518 REMARK 3 DIHEDRAL : 14.612 1706 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 7 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 7 THROUGH 29 ) REMARK 3 ORIGIN FOR THE GROUP (A): -11.6962 6.6695 -3.4849 REMARK 3 T TENSOR REMARK 3 T11: 0.3411 T22: 0.5232 REMARK 3 T33: 0.4523 T12: -0.1116 REMARK 3 T13: 0.0944 T23: -0.0017 REMARK 3 L TENSOR REMARK 3 L11: 0.8605 L22: 1.6635 REMARK 3 L33: 0.2324 L12: -1.1899 REMARK 3 L13: 0.2745 L23: -0.3184 REMARK 3 S TENSOR REMARK 3 S11: -0.0294 S12: -0.4535 S13: -0.3379 REMARK 3 S21: 0.4704 S22: 0.6034 S23: 0.5902 REMARK 3 S31: 0.2143 S32: 0.4516 S33: 0.4575 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 30 THROUGH 81 ) REMARK 3 ORIGIN FOR THE GROUP (A): -21.9061 22.1450 -31.3175 REMARK 3 T TENSOR REMARK 3 T11: 0.3460 T22: 0.5821 REMARK 3 T33: 0.5503 T12: -0.0697 REMARK 3 T13: -0.1093 T23: 0.0578 REMARK 3 L TENSOR REMARK 3 L11: 0.5902 L22: 1.4130 REMARK 3 L33: 0.3739 L12: -0.1037 REMARK 3 L13: 0.0773 L23: -0.1377 REMARK 3 S TENSOR REMARK 3 S11: 0.1653 S12: 0.6251 S13: -0.0403 REMARK 3 S21: -0.5796 S22: 0.1052 S23: 0.8317 REMARK 3 S31: 0.2618 S32: -0.4256 S33: 0.0847 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 82 THROUGH 160 ) REMARK 3 ORIGIN FOR THE GROUP (A): -11.0492 19.8263 -20.5609 REMARK 3 T TENSOR REMARK 3 T11: 0.2557 T22: 0.3105 REMARK 3 T33: 0.2619 T12: -0.0330 REMARK 3 T13: -0.0231 T23: 0.0013 REMARK 3 L TENSOR REMARK 3 L11: 1.0892 L22: 1.3756 REMARK 3 L33: 0.8705 L12: -0.7975 REMARK 3 L13: 0.0072 L23: -0.8345 REMARK 3 S TENSOR REMARK 3 S11: 0.1303 S12: 0.1275 S13: -0.0078 REMARK 3 S21: -0.0580 S22: -0.0082 S23: 0.4119 REMARK 3 S31: 0.0323 S32: -0.2814 S33: 0.0160 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 161 THROUGH 252 ) REMARK 3 ORIGIN FOR THE GROUP (A): 1.3869 17.6206 -22.5000 REMARK 3 T TENSOR REMARK 3 T11: 0.2386 T22: 0.2059 REMARK 3 T33: 0.2268 T12: -0.0275 REMARK 3 T13: -0.0041 T23: 0.0108 REMARK 3 L TENSOR REMARK 3 L11: 0.9570 L22: 1.6878 REMARK 3 L33: 0.7915 L12: 0.1209 REMARK 3 L13: 0.1283 L23: 0.0643 REMARK 3 S TENSOR REMARK 3 S11: 0.0159 S12: 0.1115 S13: 0.0215 REMARK 3 S21: -0.0868 S22: -0.0196 S23: -0.1838 REMARK 3 S31: -0.0095 S32: -0.0322 S33: 0.0000 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 253 THROUGH 316 ) REMARK 3 ORIGIN FOR THE GROUP (A): 3.8422 20.2488 -7.6235 REMARK 3 T TENSOR REMARK 3 T11: 0.3346 T22: 0.2326 REMARK 3 T33: 0.2427 T12: -0.0424 REMARK 3 T13: -0.0420 T23: 0.0121 REMARK 3 L TENSOR REMARK 3 L11: 0.9592 L22: 0.9827 REMARK 3 L33: 1.3729 L12: 0.4175 REMARK 3 L13: 0.2633 L23: -0.3492 REMARK 3 S TENSOR REMARK 3 S11: -0.0608 S12: -0.2776 S13: 0.0404 REMARK 3 S21: 0.4593 S22: 0.0320 S23: -0.1540 REMARK 3 S31: 0.0439 S32: 0.1272 S33: -0.0027 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 317 THROUGH 350 ) REMARK 3 ORIGIN FOR THE GROUP (A): -18.8942 23.9291 -34.3956 REMARK 3 T TENSOR REMARK 3 T11: 0.3248 T22: 0.5372 REMARK 3 T33: 0.4075 T12: 0.0383 REMARK 3 T13: -0.1849 T23: 0.0166 REMARK 3 L TENSOR REMARK 3 L11: 0.3471 L22: 0.9546 REMARK 3 L33: 0.7879 L12: 0.0854 REMARK 3 L13: -0.3371 L23: -0.0567 REMARK 3 S TENSOR REMARK 3 S11: 0.3299 S12: 0.4823 S13: 0.0916 REMARK 3 S21: -0.3872 S22: -0.0298 S23: 0.2740 REMARK 3 S31: 0.0162 S32: -0.1930 S33: 1.2577 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 12 THROUGH 25 ) REMARK 3 ORIGIN FOR THE GROUP (A): 2.1338 24.6034 -31.0199 REMARK 3 T TENSOR REMARK 3 T11: 0.3767 T22: 0.2805 REMARK 3 T33: 0.3063 T12: 0.0149 REMARK 3 T13: -0.0231 T23: 0.0410 REMARK 3 L TENSOR REMARK 3 L11: 0.5073 L22: 0.2087 REMARK 3 L33: 0.0796 L12: -0.3330 REMARK 3 L13: -0.1109 L23: 0.0512 REMARK 3 S TENSOR REMARK 3 S11: 0.3515 S12: 0.2382 S13: 0.0961 REMARK 3 S21: -0.6527 S22: -0.2051 S23: -0.2339 REMARK 3 S31: 0.0710 S32: -0.0662 S33: 0.0328 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5N1O COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 06-FEB-17. REMARK 100 THE DEPOSITION ID IS D_1200003270. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 12-MAR-16 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.9 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : BESSY REMARK 200 BEAMLINE : 14.1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.918409 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : SILICON, ACTIVE SURFACE REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 43882 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.800 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 200 DATA REDUNDANCY : 7.240 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 23.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.90 REMARK 200 COMPLETENESS FOR SHELL (%) : 97.9 REMARK 200 DATA REDUNDANCY IN SHELL : 7.30 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.580 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 4WIH REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 57.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.85 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: MES-BIS-TRIS MEGA8-SOLUTION DTT EDTA REMARK 280 LICL METHANOL, PH 6.9, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 29.54050 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 54.47300 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 35.95200 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 54.47300 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 29.54050 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 35.95200 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2180 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 15520 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -15.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -2 REMARK 465 HIS A -1 REMARK 465 MET A 0 REMARK 465 GLY A 1 REMARK 465 ASN A 2 REMARK 465 ALA A 3 REMARK 465 ALA A 4 REMARK 465 ALA A 5 REMARK 465 ALA A 6 REMARK 465 PRO A 33 REMARK 465 SER A 34 REMARK 465 GLN A 35 REMARK 465 ASN A 36 REMARK 465 ILE B 11 REMARK 465 LEU B 26 REMARK 465 VAL B 27 REMARK 465 ALA B 28 REMARK 465 ALA B 29 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 7 CG CD CE NZ REMARK 470 LYS A 8 CD CE NZ REMARK 470 LYS A 16 CG CD CE NZ REMARK 470 LYS A 21 CG CD CE NZ REMARK 470 LYS A 23 CE NZ REMARK 470 GLU A 24 CG CD OE1 OE2 REMARK 470 GLU A 25 CG CD OE1 OE2 REMARK 470 LYS A 28 CE NZ REMARK 470 LYS A 29 CE NZ REMARK 470 GLU A 31 CG CD OE1 OE2 REMARK 470 SER A 32 OG REMARK 470 SER A 53 OG REMARK 470 PHE A 54 CD1 CD2 CE1 CE2 CZ REMARK 470 LYS A 61 CE NZ REMARK 470 GLU A 64 CG CD OE1 OE2 REMARK 470 LYS A 78 CG CD CE NZ REMARK 470 VAL A 80 CG1 CG2 REMARK 470 LYS A 81 CG CD CE NZ REMARK 470 LEU A 82 CG CD1 CD2 REMARK 470 ILE A 85 CD1 REMARK 470 LEU A 89 CG CD1 CD2 REMARK 470 LYS A 92 NZ REMARK 470 ARG A 93 CZ NH1 NH2 REMARK 470 LYS A 105 CD CE NZ REMARK 470 GLU A 107 CD OE1 OE2 REMARK 470 ILE A 135 CD1 REMARK 470 GLN A 177 CD OE1 NE2 REMARK 470 ARG A 190 CD NE CZ NH1 NH2 REMARK 470 LYS A 192 CE NZ REMARK 470 ILE A 244 CD1 REMARK 470 LYS A 254 CG CD CE NZ REMARK 470 ARG A 256 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 285 CG CD CE NZ REMARK 470 LYS A 295 CD CE NZ REMARK 470 ILE A 303 CD1 REMARK 470 LYS A 317 CD CE NZ REMARK 470 PHE A 318 CG CD1 CD2 CE1 CE2 CZ REMARK 470 LYS A 319 CG CD CE NZ REMARK 470 GLU A 331 OE1 OE2 REMARK 470 GLU A 333 CG CD OE1 OE2 REMARK 470 GLU A 334 CG CD OE1 OE2 REMARK 470 ILE A 335 CD1 REMARK 470 ARG A 336 CZ NH1 NH2 REMARK 470 ILE A 339 CD1 REMARK 470 LYS A 342 CE NZ REMARK 470 LYS A 345 CG CD CE NZ REMARK 470 GLU A 349 CD OE1 OE2 REMARK 470 GLN B 20 CD OE1 NE2 REMARK 470 ILE B 22 CD1 REMARK 470 ASP B 24 CG OD1 OD2 REMARK 470 ILE B 25 CG1 CG2 CD1 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 H GLY A 322 O HOH A 502 1.53 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 134 NE - CZ - NH1 ANGL. DEV. = -3.4 DEGREES REMARK 500 ARG A 144 NE - CZ - NH1 ANGL. DEV. = 6.9 DEGREES REMARK 500 ARG A 144 NE - CZ - NH2 ANGL. DEV. = -5.9 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU A 31 57.75 -101.30 REMARK 500 ALA A 38 -174.09 -173.33 REMARK 500 ASN A 99 107.99 -161.56 REMARK 500 ASP A 166 40.43 -144.36 REMARK 500 ASP A 184 87.26 64.60 REMARK 500 ASP A 184 87.26 55.40 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MPD A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 8GB A 402 DBREF 5N1O A 0 350 UNP P25321 KAPCA_CRIGR 1 351 DBREF1 5N1O B 11 29 UNP A0A061IH64_CRIGR DBREF2 5N1O B A0A061IH64 12 30 SEQADV 5N1O GLY A -2 UNP P25321 EXPRESSION TAG SEQADV 5N1O HIS A -1 UNP P25321 EXPRESSION TAG SEQADV 5N1O ALA B 13 UNP A0A061IH6 SER 14 CONFLICT SEQADV 5N1O GLN B 20 UNP A0A061IH6 ASN 21 CONFLICT SEQADV 5N1O ALA B 28 UNP A0A061IH6 SER 29 CONFLICT SEQADV 5N1O ALA B 29 UNP A0A061IH6 SER 30 CONFLICT SEQRES 1 A 353 GLY HIS MET GLY ASN ALA ALA ALA ALA LYS LYS GLY SEP SEQRES 2 A 353 GLU GLN GLU SER VAL LYS GLU PHE LEU ALA LYS ALA LYS SEQRES 3 A 353 GLU GLU PHE LEU LYS LYS TRP GLU SER PRO SER GLN ASN SEQRES 4 A 353 THR ALA GLN LEU ASP HIS PHE ASP ARG ILE LYS THR LEU SEQRES 5 A 353 GLY THR GLY SER PHE GLY ARG VAL MET LEU VAL LYS HIS SEQRES 6 A 353 LYS GLU THR GLY ASN HIS TYR ALA MET LYS ILE LEU ASP SEQRES 7 A 353 LYS GLN LYS VAL VAL LYS LEU LYS GLN ILE GLU HIS THR SEQRES 8 A 353 LEU ASN GLU LYS ARG ILE LEU GLN ALA VAL ASN PHE PRO SEQRES 9 A 353 PHE LEU VAL LYS LEU GLU PHE SER PHE LYS ASP ASN SER SEQRES 10 A 353 ASN LEU TYR MET VAL MET GLU TYR VAL PRO GLY GLY GLU SEQRES 11 A 353 MET PHE SER HIS LEU ARG ARG ILE GLY ARG PHE SEP GLU SEQRES 12 A 353 PRO HIS ALA ARG PHE TYR ALA ALA GLN ILE VAL LEU THR SEQRES 13 A 353 PHE GLU TYR LEU HIS SER LEU ASP LEU ILE TYR ARG ASP SEQRES 14 A 353 LEU LYS PRO GLU ASN LEU LEU ILE ASP GLN GLN GLY TYR SEQRES 15 A 353 ILE GLN VAL THR ASP PHE GLY PHE ALA LYS ARG VAL LYS SEQRES 16 A 353 GLY ARG THR TRP TPO LEU CYS GLY THR PRO GLU TYR LEU SEQRES 17 A 353 ALA PRO GLU ILE ILE LEU SER LYS GLY TYR ASN LYS ALA SEQRES 18 A 353 VAL ASP TRP TRP ALA LEU GLY VAL LEU ILE TYR GLU MET SEQRES 19 A 353 ALA ALA GLY TYR PRO PRO PHE PHE ALA ASP GLN PRO ILE SEQRES 20 A 353 GLN ILE TYR GLU LYS ILE VAL SER GLY LYS VAL ARG PHE SEQRES 21 A 353 PRO SER HIS PHE SER SER ASP LEU LYS ASP LEU LEU ARG SEQRES 22 A 353 ASN LEU LEU GLN VAL ASP LEU THR LYS ARG PHE GLY ASN SEQRES 23 A 353 LEU LYS ASN GLY VAL ASN ASP ILE LYS ASN HIS LYS TRP SEQRES 24 A 353 PHE ALA THR THR ASP TRP ILE ALA ILE TYR GLN ARG LYS SEQRES 25 A 353 VAL GLU ALA PRO PHE ILE PRO LYS PHE LYS GLY PRO GLY SEQRES 26 A 353 ASP THR SER ASN PHE ASP ASP TYR GLU GLU GLU GLU ILE SEQRES 27 A 353 ARG VAL SEP ILE ASN GLU LYS CYS GLY LYS GLU PHE THR SEQRES 28 A 353 GLU PHE SEQRES 1 B 19 ILE ALA ALA GLY ARG THR GLY ARG ARG GLN ALA ILE HIS SEQRES 2 B 19 ASP ILE LEU VAL ALA ALA MODRES 5N1O SEP A 10 SER MODIFIED RESIDUE MODRES 5N1O SEP A 139 SER MODIFIED RESIDUE MODRES 5N1O TPO A 197 THR MODIFIED RESIDUE MODRES 5N1O SEP A 338 SER MODIFIED RESIDUE HET SEP A 10 14 HET SEP A 139 14 HET TPO A 197 17 HET SEP A 338 14 HET MPD A 401 22 HET 8GB A 402 21 HETNAM SEP PHOSPHOSERINE HETNAM TPO PHOSPHOTHREONINE HETNAM MPD (4S)-2-METHYL-2,4-PENTANEDIOL HETNAM 8GB 1-[5-CHLORANYL-3-(CHLOROMETHYL)-2-OXIDANYL- HETNAM 2 8GB PHENYL]ETHANONE HETSYN SEP PHOSPHONOSERINE HETSYN TPO PHOSPHONOTHREONINE FORMUL 1 SEP 3(C3 H8 N O6 P) FORMUL 1 TPO C4 H10 N O6 P FORMUL 3 MPD C6 H14 O2 FORMUL 4 8GB C9 H8 CL2 O2 FORMUL 5 HOH *194(H2 O) HELIX 1 AA1 LYS A 7 GLU A 31 1 25 HELIX 2 AA2 GLN A 39 ASP A 41 5 3 HELIX 3 AA3 LYS A 81 VAL A 98 1 18 HELIX 4 AA4 GLU A 127 GLY A 136 1 10 HELIX 5 AA5 SEP A 139 LEU A 160 1 22 HELIX 6 AA6 LYS A 168 GLU A 170 5 3 HELIX 7 AA7 THR A 201 LEU A 205 5 5 HELIX 8 AA8 ALA A 206 LEU A 211 1 6 HELIX 9 AA9 LYS A 217 GLY A 234 1 18 HELIX 10 AB1 GLN A 242 GLY A 253 1 12 HELIX 11 AB2 SER A 262 LEU A 273 1 12 HELIX 12 AB3 VAL A 288 ASN A 293 1 6 HELIX 13 AB4 HIS A 294 ALA A 298 5 5 HELIX 14 AB5 ASP A 301 GLN A 307 1 7 HELIX 15 AB6 GLY A 344 THR A 348 5 5 SHEET 1 AA1 5 PHE A 43 GLY A 52 0 SHEET 2 AA1 5 GLY A 55 HIS A 62 -1 O LYS A 61 N ASP A 44 SHEET 3 AA1 5 HIS A 68 ASP A 75 -1 O MET A 71 N MET A 58 SHEET 4 AA1 5 ASN A 115 GLU A 121 -1 O MET A 120 N ALA A 70 SHEET 5 AA1 5 LEU A 106 LYS A 111 -1 N GLU A 107 O VAL A 119 SHEET 1 AA2 2 LEU A 162 ILE A 163 0 SHEET 2 AA2 2 LYS A 189 ARG A 190 -1 O LYS A 189 N ILE A 163 SHEET 1 AA3 2 LEU A 172 ILE A 174 0 SHEET 2 AA3 2 ILE A 180 VAL A 182 -1 O GLN A 181 N LEU A 173 LINK C GLY A 9 N SEP A 10 1555 1555 1.34 LINK C SEP A 10 N GLU A 11 1555 1555 1.33 LINK C PHE A 138 N SEP A 139 1555 1555 1.33 LINK C SEP A 139 N GLU A 140 1555 1555 1.35 LINK C TRP A 196 N TPO A 197 1555 1555 1.34 LINK C TPO A 197 N LEU A 198 1555 1555 1.32 LINK C VAL A 337 N SEP A 338 1555 1555 1.33 LINK C SEP A 338 N ILE A 339 1555 1555 1.33 SITE 1 AC1 4 VAL A 15 LEU A 152 GLU A 155 TYR A 306 SITE 1 AC2 8 ALA A 70 GLU A 121 VAL A 123 GLU A 127 SITE 2 AC2 8 LEU A 173 THR A 183 PHE A 327 HOH A 638 CRYST1 59.081 71.904 108.946 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.016926 0.000000 0.000000 0.00000 SCALE2 0.000000 0.013907 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009179 0.00000