HEADER TRANSFERASE 06-FEB-17 5N1X TITLE CRYSTAL STRUCTURE OF THE BCL6 BTB DOMAIN IN COMPLEX WITH PYRAZOLO- TITLE 2 PYRIMIDINE LIGAND COMPND MOL_ID: 1; COMPND 2 MOLECULE: B-CELL LYMPHOMA 6 PROTEIN; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: BCL-6,B-CELL LYMPHOMA 5 PROTEIN,BCL-5,PROTEIN LAZ-3,ZINC COMPND 5 FINGER AND BTB DOMAIN-CONTAINING PROTEIN 27,ZINC FINGER PROTEIN 51; COMPND 6 ENGINEERED: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: B-CELL LYMPHOMA 6 PROTEIN; COMPND 9 CHAIN: B, C; COMPND 10 SYNONYM: BCL-6,B-CELL LYMPHOMA 5 PROTEIN,BCL-5,PROTEIN LAZ-3,ZINC COMPND 11 FINGER AND BTB DOMAIN-CONTAINING PROTEIN 27,ZINC FINGER PROTEIN 51; COMPND 12 ENGINEERED: YES; COMPND 13 MOL_ID: 3; COMPND 14 MOLECULE: B-CELL LYMPHOMA 6 PROTEIN; COMPND 15 CHAIN: D; COMPND 16 SYNONYM: BCL-6,B-CELL LYMPHOMA 5 PROTEIN,BCL-5,PROTEIN LAZ-3,ZINC COMPND 17 FINGER AND BTB DOMAIN-CONTAINING PROTEIN 27,ZINC FINGER PROTEIN 51; COMPND 18 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: BCL6, BCL5, LAZ3, ZBTB27, ZNF51; SOURCE 6 EXPRESSION_SYSTEM: KOMAGATAELLA PASTORIS; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 4922; SOURCE 8 MOL_ID: 2; SOURCE 9 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 10 ORGANISM_COMMON: HUMAN; SOURCE 11 ORGANISM_TAXID: 9606; SOURCE 12 GENE: BCL6, BCL5, LAZ3, ZBTB27, ZNF51; SOURCE 13 EXPRESSION_SYSTEM: KOMAGATAELLA PASTORIS; SOURCE 14 EXPRESSION_SYSTEM_TAXID: 4922; SOURCE 15 MOL_ID: 3; SOURCE 16 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 17 ORGANISM_COMMON: HUMAN; SOURCE 18 ORGANISM_TAXID: 9606; SOURCE 19 GENE: BCL6, BCL5, LAZ3, ZBTB27, ZNF51; SOURCE 20 EXPRESSION_SYSTEM: KOMAGATAELLA PASTORIS; SOURCE 21 EXPRESSION_SYSTEM_TAXID: 4922 KEYWDS KINASE, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR G.ROBB,A.FERGUSON,D.HARGREAVES REVDAT 2 07-JUN-17 5N1X 1 JRNL REVDAT 1 17-MAY-17 5N1X 0 JRNL AUTH W.MCCOULL,R.D.ABRAMS,E.ANDERSON,K.BLADES,P.BARTON,M.BOX, JRNL AUTH 2 J.BURGESS,K.BYTH,Q.CAO,C.CHUAQUI,R.J.CARBAJO,T.CHEUNG, JRNL AUTH 3 E.CODE,A.D.FERGUSON,S.FILLERY,N.O.FULLER,E.GANGL,N.GAO, JRNL AUTH 4 M.GRIST,D.HARGREAVES,M.R.HOWARD,J.HU,P.D.KEMMITT,J.E.NELSON, JRNL AUTH 5 N.O'CONNELL,D.B.PRINCE,P.RAUBO,P.B.RAWLINS,G.R.ROBB,J.SHI, JRNL AUTH 6 M.J.WARING,D.WHITTAKER,M.WYLOT,X.ZHU JRNL TITL DISCOVERY OF PYRAZOLO[1,5-A]PYRIMIDINE B-CELL LYMPHOMA 6 JRNL TITL 2 (BCL6) BINDERS AND OPTIMIZATION TO HIGH AFFINITY MACROCYCLIC JRNL TITL 3 INHIBITORS. JRNL REF J. MED. CHEM. V. 60 4386 2017 JRNL REFN ISSN 1520-4804 JRNL PMID 28485934 JRNL DOI 10.1021/ACS.JMEDCHEM.7B00359 REMARK 2 REMARK 2 RESOLUTION. 1.72 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : BUSTER 2.11.5 REMARK 3 AUTHORS : BRICOGNE,BLANC,BRANDL,FLENSBURG,KELLER, REMARK 3 : PACIOREK,ROVERSI,SHARFF,SMART,VONRHEIN, REMARK 3 : WOMACK,MATTHEWS,TEN EYCK,TRONRUD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.72 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 49.74 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 3 NUMBER OF REFLECTIONS : 47040 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.184 REMARK 3 R VALUE (WORKING SET) : 0.183 REMARK 3 FREE R VALUE : 0.214 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.060 REMARK 3 FREE R VALUE TEST SET COUNT : 2378 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (ANGSTROMS) : 1.72 REMARK 3 BIN RESOLUTION RANGE LOW (ANGSTROMS) : 1.76 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.36 REMARK 3 REFLECTIONS IN BIN (WORKING + TEST SET) : 3199 REMARK 3 BIN R VALUE (WORKING + TEST SET) : 0.2039 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 3037 REMARK 3 BIN R VALUE (WORKING SET) : 0.2026 REMARK 3 BIN FREE R VALUE : 0.2290 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 5.06 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 162 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3892 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 72 REMARK 3 SOLVENT ATOMS : 143 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 28.76 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 34.53 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 1.37420 REMARK 3 B22 (A**2) : 1.37420 REMARK 3 B33 (A**2) : -2.74830 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.242 REMARK 3 DPI (BLOW EQ-10) BASED ON R VALUE (A) : 0.111 REMARK 3 DPI (BLOW EQ-9) BASED ON FREE R VALUE (A) : 0.106 REMARK 3 DPI (CRUICKSHANK) BASED ON R VALUE (A) : 0.115 REMARK 3 DPI (CRUICKSHANK) BASED ON FREE R VALUE (A) : 0.109 REMARK 3 REMARK 3 REFERENCES: BLOW, D. (2002) ACTA CRYST D58, 792-797 REMARK 3 CRUICKSHANK, D.W.J. (1999) ACTA CRYST D55, 583-601 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.956 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.937 REMARK 3 REMARK 3 NUMBER OF GEOMETRIC FUNCTION TERMS DEFINED : 15 REMARK 3 TERM COUNT WEIGHT FUNCTION. REMARK 3 BOND LENGTHS : 4036 ; 2.000 ; HARMONIC REMARK 3 BOND ANGLES : 5448 ; 2.000 ; HARMONIC REMARK 3 TORSION ANGLES : 1466 ; 2.000 ; SINUSOIDAL REMARK 3 TRIGONAL CARBON PLANES : 100 ; 2.000 ; HARMONIC REMARK 3 GENERAL PLANES : 673 ; 5.000 ; HARMONIC REMARK 3 ISOTROPIC THERMAL FACTORS : 4036 ; 20.000 ; HARMONIC REMARK 3 BAD NON-BONDED CONTACTS : NULL ; NULL ; NULL REMARK 3 IMPROPER TORSIONS : NULL ; NULL ; NULL REMARK 3 PSEUDOROTATION ANGLES : NULL ; NULL ; NULL REMARK 3 CHIRAL IMPROPER TORSION : 534 ; 5.000 ; SEMIHARMONIC REMARK 3 SUM OF OCCUPANCIES : NULL ; NULL ; NULL REMARK 3 UTILITY DISTANCES : NULL ; NULL ; NULL REMARK 3 UTILITY ANGLES : NULL ; NULL ; NULL REMARK 3 UTILITY TORSION : NULL ; NULL ; NULL REMARK 3 IDEAL-DIST CONTACT TERM : 4695 ; 4.000 ; SEMIHARMONIC REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.010 REMARK 3 BOND ANGLES (DEGREES) : 0.95 REMARK 3 PEPTIDE OMEGA TORSION ANGLES (DEGREES) : 3.04 REMARK 3 OTHER TORSION ANGLES (DEGREES) : 16.63 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: { A|* } REMARK 3 ORIGIN FOR THE GROUP (A): -18.8169 8.1914 -0.7932 REMARK 3 T TENSOR REMARK 3 T11: -0.0133 T22: 0.0037 REMARK 3 T33: -0.0595 T12: 0.0689 REMARK 3 T13: 0.0152 T23: -0.0058 REMARK 3 L TENSOR REMARK 3 L11: 1.0258 L22: 0.8953 REMARK 3 L33: 1.5266 L12: 0.0358 REMARK 3 L13: -0.4589 L23: -0.5584 REMARK 3 S TENSOR REMARK 3 S11: -0.0039 S12: 0.0118 S13: -0.0442 REMARK 3 S21: 0.0218 S22: 0.0053 S23: 0.0358 REMARK 3 S31: 0.0201 S32: -0.0826 S33: -0.0015 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: { B|* } REMARK 3 ORIGIN FOR THE GROUP (A): -9.7277 18.6395 -20.4076 REMARK 3 T TENSOR REMARK 3 T11: -0.0201 T22: -0.0035 REMARK 3 T33: -0.0629 T12: 0.0733 REMARK 3 T13: -0.0035 T23: 0.0050 REMARK 3 L TENSOR REMARK 3 L11: 1.7706 L22: 0.5683 REMARK 3 L33: 2.1016 L12: -0.4438 REMARK 3 L13: -1.1036 L23: -0.0506 REMARK 3 S TENSOR REMARK 3 S11: -0.0319 S12: 0.1439 S13: 0.0792 REMARK 3 S21: -0.0179 S22: 0.0288 S23: -0.0044 REMARK 3 S31: -0.0154 S32: -0.0256 S33: 0.0031 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: { C|* } REMARK 3 ORIGIN FOR THE GROUP (A): -35.2499 -8.2729 -20.3629 REMARK 3 T TENSOR REMARK 3 T11: 0.0209 T22: 0.0306 REMARK 3 T33: -0.0621 T12: 0.1193 REMARK 3 T13: 0.0120 T23: 0.0330 REMARK 3 L TENSOR REMARK 3 L11: 0.6483 L22: 0.6229 REMARK 3 L33: 1.3248 L12: -0.0608 REMARK 3 L13: -0.6652 L23: -0.2596 REMARK 3 S TENSOR REMARK 3 S11: 0.0804 S12: 0.1425 S13: 0.0883 REMARK 3 S21: -0.0446 S22: -0.0851 S23: -0.0311 REMARK 3 S31: -0.1093 S32: -0.0282 S33: 0.0047 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: { D|* } REMARK 3 ORIGIN FOR THE GROUP (A): -45.4240 -17.5080 -0.8841 REMARK 3 T TENSOR REMARK 3 T11: -0.0199 T22: 0.0071 REMARK 3 T33: -0.0379 T12: 0.0655 REMARK 3 T13: -0.0144 T23: -0.0252 REMARK 3 L TENSOR REMARK 3 L11: 0.7690 L22: 1.5991 REMARK 3 L33: 0.9292 L12: -0.6532 REMARK 3 L13: -0.3887 L23: -0.3766 REMARK 3 S TENSOR REMARK 3 S11: 0.1055 S12: 0.0793 S13: -0.0498 REMARK 3 S21: -0.0423 S22: -0.1483 S23: 0.1415 REMARK 3 S31: 0.0249 S32: 0.0297 S33: 0.0428 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5N1X COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 07-FEB-17. REMARK 100 THE DEPOSITION ID IS D_1200003426. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 05-OCT-13 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 17-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 S 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 47127 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.720 REMARK 200 RESOLUTION RANGE LOW (A) : 198.950 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 13.30 REMARK 200 R MERGE (I) : 0.07100 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 22.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.72 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.89 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 13.40 REMARK 200 R MERGE FOR SHELL (I) : 0.77500 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.100 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 40.12 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.05 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: UNKNOWN, VAPOR DIFFUSION, SITTING REMARK 280 DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 43 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y,X,Z+3/4 REMARK 290 4555 Y,-X,Z+1/4 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 99.47300 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 149.20950 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 49.73650 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3, 4 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 4 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG A 40 -14.01 73.11 REMARK 500 GLN A 113 60.09 60.17 REMARK 500 SER B 39 -87.19 70.76 REMARK 500 ARG C 40 -14.79 74.48 REMARK 500 ARG D 40 -13.11 73.76 REMARK 500 LEU D 97 74.11 -114.66 REMARK 500 MET D 114 74.35 -112.50 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 8HH B 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 8HH B 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 8HH C 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 8HH D 201 DBREF 5N1X A 9 128 UNP P41182 BCL6_HUMAN 9 128 DBREF 5N1X B 7 127 UNP P41182 BCL6_HUMAN 7 127 DBREF 5N1X C 7 127 UNP P41182 BCL6_HUMAN 7 127 DBREF 5N1X D 9 125 UNP P41182 BCL6_HUMAN 9 125 SEQADV 5N1X GLN A 8 UNP P41182 EXPRESSION TAG SEQADV 5N1X ARG A 67 UNP P41182 CYS 67 CONFLICT SEQADV 5N1X ASN A 84 UNP P41182 CYS 84 CONFLICT SEQADV 5N1X ALA A 121 UNP P41182 CYS 121 CONFLICT SEQADV 5N1X GLN B 8 UNP P41182 CYS 8 CONFLICT SEQADV 5N1X ARG B 67 UNP P41182 CYS 67 CONFLICT SEQADV 5N1X ASN B 84 UNP P41182 CYS 84 CONFLICT SEQADV 5N1X ALA B 121 UNP P41182 CYS 121 CONFLICT SEQADV 5N1X GLN C 8 UNP P41182 CYS 8 CONFLICT SEQADV 5N1X ARG C 67 UNP P41182 CYS 67 CONFLICT SEQADV 5N1X ASN C 84 UNP P41182 CYS 84 CONFLICT SEQADV 5N1X ALA C 121 UNP P41182 CYS 121 CONFLICT SEQADV 5N1X GLN D 8 UNP P41182 EXPRESSION TAG SEQADV 5N1X ARG D 67 UNP P41182 CYS 67 CONFLICT SEQADV 5N1X ASN D 84 UNP P41182 CYS 84 CONFLICT SEQADV 5N1X ALA D 121 UNP P41182 CYS 121 CONFLICT SEQRES 1 A 121 GLN ILE GLN PHE THR ARG HIS ALA SER ASP VAL LEU LEU SEQRES 2 A 121 ASN LEU ASN ARG LEU ARG SER ARG ASP ILE LEU THR ASP SEQRES 3 A 121 VAL VAL ILE VAL VAL SER ARG GLU GLN PHE ARG ALA HIS SEQRES 4 A 121 LYS THR VAL LEU MET ALA CYS SER GLY LEU PHE TYR SER SEQRES 5 A 121 ILE PHE THR ASP GLN LEU LYS ARG ASN LEU SER VAL ILE SEQRES 6 A 121 ASN LEU ASP PRO GLU ILE ASN PRO GLU GLY PHE ASN ILE SEQRES 7 A 121 LEU LEU ASP PHE MET TYR THR SER ARG LEU ASN LEU ARG SEQRES 8 A 121 GLU GLY ASN ILE MET ALA VAL MET ALA THR ALA MET TYR SEQRES 9 A 121 LEU GLN MET GLU HIS VAL VAL ASP THR ALA ARG LYS PHE SEQRES 10 A 121 ILE LYS ALA SER SEQRES 1 B 121 SER GLN ILE GLN PHE THR ARG HIS ALA SER ASP VAL LEU SEQRES 2 B 121 LEU ASN LEU ASN ARG LEU ARG SER ARG ASP ILE LEU THR SEQRES 3 B 121 ASP VAL VAL ILE VAL VAL SER ARG GLU GLN PHE ARG ALA SEQRES 4 B 121 HIS LYS THR VAL LEU MET ALA CYS SER GLY LEU PHE TYR SEQRES 5 B 121 SER ILE PHE THR ASP GLN LEU LYS ARG ASN LEU SER VAL SEQRES 6 B 121 ILE ASN LEU ASP PRO GLU ILE ASN PRO GLU GLY PHE ASN SEQRES 7 B 121 ILE LEU LEU ASP PHE MET TYR THR SER ARG LEU ASN LEU SEQRES 8 B 121 ARG GLU GLY ASN ILE MET ALA VAL MET ALA THR ALA MET SEQRES 9 B 121 TYR LEU GLN MET GLU HIS VAL VAL ASP THR ALA ARG LYS SEQRES 10 B 121 PHE ILE LYS ALA SEQRES 1 C 121 SER GLN ILE GLN PHE THR ARG HIS ALA SER ASP VAL LEU SEQRES 2 C 121 LEU ASN LEU ASN ARG LEU ARG SER ARG ASP ILE LEU THR SEQRES 3 C 121 ASP VAL VAL ILE VAL VAL SER ARG GLU GLN PHE ARG ALA SEQRES 4 C 121 HIS LYS THR VAL LEU MET ALA CYS SER GLY LEU PHE TYR SEQRES 5 C 121 SER ILE PHE THR ASP GLN LEU LYS ARG ASN LEU SER VAL SEQRES 6 C 121 ILE ASN LEU ASP PRO GLU ILE ASN PRO GLU GLY PHE ASN SEQRES 7 C 121 ILE LEU LEU ASP PHE MET TYR THR SER ARG LEU ASN LEU SEQRES 8 C 121 ARG GLU GLY ASN ILE MET ALA VAL MET ALA THR ALA MET SEQRES 9 C 121 TYR LEU GLN MET GLU HIS VAL VAL ASP THR ALA ARG LYS SEQRES 10 C 121 PHE ILE LYS ALA SEQRES 1 D 118 GLN ILE GLN PHE THR ARG HIS ALA SER ASP VAL LEU LEU SEQRES 2 D 118 ASN LEU ASN ARG LEU ARG SER ARG ASP ILE LEU THR ASP SEQRES 3 D 118 VAL VAL ILE VAL VAL SER ARG GLU GLN PHE ARG ALA HIS SEQRES 4 D 118 LYS THR VAL LEU MET ALA CYS SER GLY LEU PHE TYR SER SEQRES 5 D 118 ILE PHE THR ASP GLN LEU LYS ARG ASN LEU SER VAL ILE SEQRES 6 D 118 ASN LEU ASP PRO GLU ILE ASN PRO GLU GLY PHE ASN ILE SEQRES 7 D 118 LEU LEU ASP PHE MET TYR THR SER ARG LEU ASN LEU ARG SEQRES 8 D 118 GLU GLY ASN ILE MET ALA VAL MET ALA THR ALA MET TYR SEQRES 9 D 118 LEU GLN MET GLU HIS VAL VAL ASP THR ALA ARG LYS PHE SEQRES 10 D 118 ILE HET 8HH B 201 18 HET 8HH B 202 18 HET 8HH C 201 18 HET 8HH D 201 18 HETNAM 8HH ~{N}-ETHYL-5-PYRIDIN-3-YL-PYRAZOLO[1,5-A]PYRIMIDIN-7- HETNAM 2 8HH AMINE FORMUL 5 8HH 4(C13 H13 N5) FORMUL 9 HOH *143(H2 O) HELIX 1 AA1 ARG A 13 ARG A 28 1 16 HELIX 2 AA2 HIS A 46 SER A 54 1 9 HELIX 3 AA3 SER A 54 ASP A 63 1 10 HELIX 4 AA4 ASN A 79 SER A 93 1 15 HELIX 5 AA5 ASN A 101 LEU A 112 1 12 HELIX 6 AA6 MET A 114 SER A 128 1 15 HELIX 7 AA7 ARG B 13 ARG B 28 1 16 HELIX 8 AA8 HIS B 46 SER B 54 1 9 HELIX 9 AA9 SER B 54 ASP B 63 1 10 HELIX 10 AB1 ASP B 63 ASN B 68 1 6 HELIX 11 AB2 ASN B 79 SER B 93 1 15 HELIX 12 AB3 ASN B 101 GLN B 113 1 13 HELIX 13 AB4 MET B 114 ALA B 127 1 14 HELIX 14 AB5 ARG C 13 ARG C 28 1 16 HELIX 15 AB6 HIS C 46 SER C 54 1 9 HELIX 16 AB7 SER C 54 ASP C 63 1 10 HELIX 17 AB8 ASP C 63 ASN C 68 1 6 HELIX 18 AB9 ASN C 79 SER C 93 1 15 HELIX 19 AC1 ASN C 101 LEU C 112 1 12 HELIX 20 AC2 MET C 114 ALA C 127 1 14 HELIX 21 AC3 ARG D 13 ARG D 28 1 16 HELIX 22 AC4 HIS D 46 SER D 54 1 9 HELIX 23 AC5 SER D 54 ASP D 63 1 10 HELIX 24 AC6 ASP D 63 ASN D 68 1 6 HELIX 25 AC7 ASN D 79 SER D 93 1 15 HELIX 26 AC8 ASN D 101 LEU D 112 1 12 HELIX 27 AC9 MET D 114 ILE D 125 1 12 SHEET 1 AA1 2 ILE A 9 GLN A 10 0 SHEET 2 AA1 2 ARG B 94 LEU B 95 -1 O LEU B 95 N ILE A 9 SHEET 1 AA2 3 GLU A 41 ALA A 45 0 SHEET 2 AA2 3 VAL A 34 VAL A 38 -1 N ILE A 36 O PHE A 43 SHEET 3 AA2 3 VAL A 71 ASN A 73 1 O ILE A 72 N VAL A 37 SHEET 1 AA3 2 ARG A 94 ASN A 96 0 SHEET 2 AA3 2 GLN B 8 GLN B 10 -1 O ILE B 9 N LEU A 95 SHEET 1 AA4 3 GLU B 41 ALA B 45 0 SHEET 2 AA4 3 VAL B 34 VAL B 38 -1 N ILE B 36 O PHE B 43 SHEET 3 AA4 3 VAL B 71 ASN B 73 1 O ILE B 72 N VAL B 37 SHEET 1 AA5 2 GLN C 8 GLN C 10 0 SHEET 2 AA5 2 ARG D 94 ASN D 96 -1 O LEU D 95 N ILE C 9 SHEET 1 AA6 3 GLU C 41 ALA C 45 0 SHEET 2 AA6 3 VAL C 34 VAL C 38 -1 N ILE C 36 O PHE C 43 SHEET 3 AA6 3 VAL C 71 ASN C 73 1 O ILE C 72 N VAL C 37 SHEET 1 AA7 2 ARG C 94 LEU C 95 0 SHEET 2 AA7 2 ILE D 9 GLN D 10 -1 O ILE D 9 N LEU C 95 SHEET 1 AA8 3 GLU D 41 ALA D 45 0 SHEET 2 AA8 3 VAL D 34 VAL D 38 -1 N ILE D 36 O PHE D 43 SHEET 3 AA8 3 VAL D 71 ASN D 73 1 O ILE D 72 N VAL D 37 SITE 1 AC1 8 MET A 51 ALA A 52 TYR A 58 ASN B 21 SITE 2 AC1 8 ARG B 24 LEU B 25 GLU D 81 ASN D 84 SITE 1 AC2 5 ASN A 21 ARG A 24 LEU A 25 MET B 51 SITE 2 AC2 5 TYR B 58 SITE 1 AC3 6 ASN C 21 ARG C 24 LEU C 25 MET D 51 SITE 2 AC3 6 ALA D 52 TYR D 58 SITE 1 AC4 10 GLU B 81 ASN B 84 ILE B 85 MET C 51 SITE 2 AC4 10 SER C 54 GLY C 55 TYR C 58 ASN D 21 SITE 3 AC4 10 ARG D 24 LEU D 25 CRYST1 47.936 47.936 198.946 90.00 90.00 90.00 P 43 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.020861 0.000000 0.000000 0.00000 SCALE2 0.000000 0.020861 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005026 0.00000