HEADER CELL CYCLE 07-FEB-17 5N22 TITLE STRUCTURE OF XECO2 ACETYLTRANSFERASE DOMAIN BOUND TO K106-COA TITLE 2 CONJUGATE COMPND MOL_ID: 1; COMPND 2 MOLECULE: XECO2; COMPND 3 CHAIN: A, B, C, D; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: GLY-ALA-LYS-LYX-ASP-GLN-TYR-PHE-LEU; COMPND 7 CHAIN: E, G, J, L; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: XENOPUS LAEVIS; SOURCE 3 ORGANISM_COMMON: AFRICAN CLAWED FROG; SOURCE 4 ORGANISM_TAXID: 8355; SOURCE 5 GENE: XECO2; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 MOL_ID: 2; SOURCE 9 SYNTHETIC: YES; SOURCE 10 ORGANISM_SCIENTIFIC: XENOPUS LAEVIS; SOURCE 11 ORGANISM_TAXID: 8355 KEYWDS CELL CYCLE EXPDTA X-RAY DIFFRACTION AUTHOR W.C.H.CHAO,B.O.WADE,M.R.SINGLETON REVDAT 3 13-SEP-17 5N22 1 REMARK REVDAT 2 29-MAR-17 5N22 1 JRNL REVDAT 1 15-MAR-17 5N22 0 JRNL AUTH W.C.CHAO,B.O.WADE,C.BOUCHOUX,A.W.JONES,A.G.PURKISS, JRNL AUTH 2 S.FEDERICO,N.O'REILLY,A.P.SNIJDERS,F.UHLMANN,M.R.SINGLETON JRNL TITL STRUCTURAL BASIS OF ECO1-MEDIATED COHESIN ACETYLATION. JRNL REF SCI REP V. 7 44313 2017 JRNL REFN ESSN 2045-2322 JRNL PMID 28290497 JRNL DOI 10.1038/SREP44313 REMARK 2 REMARK 2 RESOLUTION. 1.99 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (DEV_2664: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.99 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 59.16 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.330 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.5 REMARK 3 NUMBER OF REFLECTIONS : 58985 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.213 REMARK 3 R VALUE (WORKING SET) : 0.211 REMARK 3 FREE R VALUE : 0.253 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.780 REMARK 3 FREE R VALUE TEST SET COUNT : 2817 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 59.1880 - 5.4004 0.99 2919 160 0.2109 0.2282 REMARK 3 2 5.4004 - 4.2868 1.00 2893 166 0.1623 0.1851 REMARK 3 3 4.2868 - 3.7451 1.00 2874 127 0.1622 0.2133 REMARK 3 4 3.7451 - 3.4027 1.00 2819 164 0.1765 0.2320 REMARK 3 5 3.4027 - 3.1588 1.00 2857 151 0.1831 0.2262 REMARK 3 6 3.1588 - 2.9726 1.00 2837 147 0.1962 0.2591 REMARK 3 7 2.9726 - 2.8237 1.00 2838 137 0.1871 0.2289 REMARK 3 8 2.8237 - 2.7008 0.99 2832 129 0.2046 0.2617 REMARK 3 9 2.7008 - 2.5968 0.99 2825 159 0.2178 0.2736 REMARK 3 10 2.5968 - 2.5072 0.99 2774 173 0.2271 0.3228 REMARK 3 11 2.5072 - 2.4288 0.98 2765 141 0.2436 0.2791 REMARK 3 12 2.4288 - 2.3594 0.98 2851 121 0.2683 0.3110 REMARK 3 13 2.3594 - 2.2973 0.98 2818 88 0.2659 0.3451 REMARK 3 14 2.2973 - 2.2412 0.98 2788 152 0.2794 0.3901 REMARK 3 15 2.2412 - 2.1903 0.98 2796 122 0.2796 0.3157 REMARK 3 16 2.1903 - 2.1437 0.97 2712 145 0.3021 0.3358 REMARK 3 17 2.1437 - 2.1008 0.97 2783 134 0.3197 0.3584 REMARK 3 18 2.1008 - 2.0611 0.97 2754 131 0.3436 0.3632 REMARK 3 19 2.0611 - 2.0243 0.96 2735 144 0.3649 0.3716 REMARK 3 20 2.0243 - 1.9900 0.96 2698 126 0.3790 0.4254 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.340 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 29.490 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.013 5879 REMARK 3 ANGLE : 1.371 7970 REMARK 3 CHIRALITY : 0.065 868 REMARK 3 PLANARITY : 0.009 979 REMARK 3 DIHEDRAL : 14.131 3508 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5N22 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 16-FEB-17. REMARK 100 THE DEPOSITION ID IS D_1200003425. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 15-APR-16 REMARK 200 TEMPERATURE (KELVIN) : 93 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I02 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97626 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XIA2 REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 59859 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.990 REMARK 200 RESOLUTION RANGE LOW (A) : 59.160 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.0 REMARK 200 DATA REDUNDANCY : 3.300 REMARK 200 R MERGE (I) : 0.06500 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 8.2500 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.99 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.06 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 3.30 REMARK 200 R MERGE FOR SHELL (I) : 0.76500 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.650 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 50.06 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.46 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.18 M MGCL2, 10% GLYCEROL, 27% 2 REMARK 280 -PROPANOL AND 0.09 M HEPES PH 7.5, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 28.88400 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3, 4 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, E REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, J REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, G REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 4 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: D, L REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 520 REMARK 465 VAL A 567 REMARK 465 SER A 568 REMARK 465 LEU A 569 REMARK 465 ARG A 570 REMARK 465 CYS A 571 REMARK 465 LEU A 612 REMARK 465 HIS A 613 REMARK 465 GLY A 614 REMARK 465 GLU A 615 REMARK 465 PRO A 616 REMARK 465 LEU A 617 REMARK 465 GLU A 618 REMARK 465 ARG A 619 REMARK 465 HIS A 620 REMARK 465 GLY B 520 REMARK 465 SER B 521 REMARK 465 MET B 522 REMARK 465 LYS B 523 REMARK 465 LEU B 612 REMARK 465 HIS B 613 REMARK 465 GLY B 614 REMARK 465 GLU B 615 REMARK 465 PRO B 616 REMARK 465 LEU B 617 REMARK 465 GLU B 618 REMARK 465 ARG B 619 REMARK 465 HIS B 620 REMARK 465 ARG B 621 REMARK 465 ALA B 622 REMARK 465 GLY C 520 REMARK 465 SER C 568 REMARK 465 LEU C 569 REMARK 465 ARG C 570 REMARK 465 CYS C 571 REMARK 465 SER C 611 REMARK 465 LEU C 612 REMARK 465 HIS C 613 REMARK 465 GLY C 614 REMARK 465 GLU C 615 REMARK 465 PRO C 616 REMARK 465 LEU C 617 REMARK 465 GLU C 618 REMARK 465 ARG C 619 REMARK 465 HIS C 620 REMARK 465 GLY D 520 REMARK 465 SER D 521 REMARK 465 MET D 522 REMARK 465 LYS D 523 REMARK 465 LEU D 612 REMARK 465 HIS D 613 REMARK 465 GLY D 614 REMARK 465 GLU D 615 REMARK 465 PRO D 616 REMARK 465 LEU D 617 REMARK 465 GLU D 618 REMARK 465 ARG D 619 REMARK 465 HIS D 620 REMARK 465 ARG D 621 REMARK 465 ALA D 622 REMARK 465 SER D 702 REMARK 465 ARG E 99 REMARK 465 ARG E 100 REMARK 465 VAL E 101 REMARK 465 ILE E 102 REMARK 465 ARG G 99 REMARK 465 ARG G 100 REMARK 465 VAL G 101 REMARK 465 ILE G 102 REMARK 465 ARG J -4 REMARK 465 ARG J -3 REMARK 465 VAL J -2 REMARK 465 ILE J -1 REMARK 465 GLY J 0 REMARK 465 ALA J 1 REMARK 465 LYS J 3 REMARK 465 ASP J 4 REMARK 465 GLN J 5 REMARK 465 TYR J 6 REMARK 465 PHE J 7 REMARK 465 LEU J 8 REMARK 465 ARG L -4 REMARK 465 ARG L -3 REMARK 465 VAL L -2 REMARK 465 ILE L -1 REMARK 465 GLY L 0 REMARK 465 ALA L 1 REMARK 465 LYS L 3 REMARK 465 ASP L 4 REMARK 465 GLN L 5 REMARK 465 TYR L 6 REMARK 465 PHE L 7 REMARK 465 LEU L 8 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 HH12 ARG A 576 O PHE A 662 1.55 REMARK 500 HH21 ARG D 624 O HOH D 805 1.59 REMARK 500 HH22 ARG D 526 OD1 ASP D 543 1.59 REMARK 500 HG SER B 652 O38 8HB J 101 1.59 REMARK 500 O HOH B 824 O HOH B 837 1.98 REMARK 500 O HOH A 832 O HOH A 838 1.99 REMARK 500 O HOH B 829 O HOH B 859 2.00 REMARK 500 O HOH B 817 O HOH B 861 2.00 REMARK 500 NH2 ARG D 570 OD1 ASN D 699 2.01 REMARK 500 O HOH A 822 O HOH A 848 2.02 REMARK 500 O HOH D 833 O HOH D 855 2.02 REMARK 500 O LYS L 2 O HOH L 201 2.03 REMARK 500 N LYS J 2 O HOH J 201 2.03 REMARK 500 O HOH B 805 O HOH B 855 2.03 REMARK 500 O HOH B 826 O HOH B 861 2.06 REMARK 500 O HOH C 813 O HOH C 841 2.10 REMARK 500 O HOH A 850 O HOH A 852 2.11 REMARK 500 O HOH D 827 O HOH D 862 2.14 REMARK 500 NZ LYS L 2 O33 8HB L 101 2.14 REMARK 500 O HOH C 807 O HOH C 817 2.17 REMARK 500 O HOH D 803 O HOH D 854 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH C 838 O HOH C 842 2745 2.13 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 CYS D 571 CB CYS D 571 SG -0.194 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLN A 565 -83.42 -58.65 REMARK 500 HIS A 610 51.62 -118.48 REMARK 500 ASP A 677 77.69 17.29 REMARK 500 ASP A 694 65.55 -100.60 REMARK 500 PHE A 700 147.95 179.51 REMARK 500 ASP B 677 76.16 27.57 REMARK 500 ASP B 694 65.26 -101.45 REMARK 500 ASN B 699 73.77 49.55 REMARK 500 GLN C 566 105.88 -42.99 REMARK 500 ASP C 677 76.78 17.13 REMARK 500 ASP D 677 75.66 29.28 REMARK 500 ASP D 694 68.87 -102.65 REMARK 500 ASN D 699 98.98 30.32 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH B 865 DISTANCE = 6.79 ANGSTROMS REMARK 525 HOH B 866 DISTANCE = 7.57 ANGSTROMS REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for Di-peptide 8HB E 201 and LYS E REMARK 800 106 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for Di-peptide 8HB G 201 and LYS G REMARK 800 106 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for Di-peptide 8HB J 101 and LYS J REMARK 800 2 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for Di-peptide 8HB L 101 and LYS L REMARK 800 2 DBREF 5N22 A 523 702 UNP A8QZK6 A8QZK6_XENLA 523 702 DBREF 5N22 B 523 702 UNP A8QZK6 A8QZK6_XENLA 523 702 DBREF 5N22 C 523 702 UNP A8QZK6 A8QZK6_XENLA 523 702 DBREF 5N22 D 523 702 UNP A8QZK6 A8QZK6_XENLA 523 702 DBREF 5N22 E 99 111 PDB 5N22 5N22 99 111 DBREF 5N22 G 99 111 PDB 5N22 5N22 99 111 DBREF 5N22 J -4 8 PDB 5N22 5N22 -4 8 DBREF 5N22 L -4 8 PDB 5N22 5N22 -4 8 SEQADV 5N22 GLY A 520 UNP A8QZK6 EXPRESSION TAG SEQADV 5N22 SER A 521 UNP A8QZK6 EXPRESSION TAG SEQADV 5N22 MET A 522 UNP A8QZK6 EXPRESSION TAG SEQADV 5N22 GLY B 520 UNP A8QZK6 EXPRESSION TAG SEQADV 5N22 SER B 521 UNP A8QZK6 EXPRESSION TAG SEQADV 5N22 MET B 522 UNP A8QZK6 EXPRESSION TAG SEQADV 5N22 GLY C 520 UNP A8QZK6 EXPRESSION TAG SEQADV 5N22 SER C 521 UNP A8QZK6 EXPRESSION TAG SEQADV 5N22 MET C 522 UNP A8QZK6 EXPRESSION TAG SEQADV 5N22 GLY D 520 UNP A8QZK6 EXPRESSION TAG SEQADV 5N22 SER D 521 UNP A8QZK6 EXPRESSION TAG SEQADV 5N22 MET D 522 UNP A8QZK6 EXPRESSION TAG SEQRES 1 A 183 GLY SER MET LYS LYS GLU ARG VAL ILE THR GLU PHE TRP SEQRES 2 A 183 ASP GLY LYS ILE ILE MET VAL SER PRO ASP ASP PRO LYS SEQRES 3 A 183 TYR ALA LEU LYS LYS ALA GLU GLU VAL ARG GLU LEU VAL SEQRES 4 A 183 ASP SER GLU LEU GLY PHE GLN GLN VAL SER LEU ARG CYS SEQRES 5 A 183 PRO SER GLN THR ARG THR TYR MET PHE VAL SER ASN GLU SEQRES 6 A 183 LYS LYS ILE VAL GLY CYS LEU ILE ALA GLU PRO ILE ARG SEQRES 7 A 183 GLU ALA TYR ARG VAL LEU ALA GLU PRO PRO SER LEU HIS SEQRES 8 A 183 SER LEU HIS GLY GLU PRO LEU GLU ARG HIS ARG ALA TRP SEQRES 9 A 183 ARG CYS SER THR GLU PRO GLU PRO ALA ILE CYS GLY ILE SEQRES 10 A 183 SER ARG ILE TRP VAL PHE ALA LEU MET ARG ARG LYS ALA SEQRES 11 A 183 ILE ALA SER ARG MET VAL ASP ALA VAL ARG SER SER PHE SEQRES 12 A 183 MET TYR GLY SER VAL LEU THR THR GLU GLU ILE ALA PHE SEQRES 13 A 183 SER ASP PRO THR PRO ASP GLY LYS LEU PHE ALA SER THR SEQRES 14 A 183 TYR CYS LYS VAL PRO ASP PHE LEU VAL TYR ASN PHE VAL SEQRES 15 A 183 SER SEQRES 1 B 183 GLY SER MET LYS LYS GLU ARG VAL ILE THR GLU PHE TRP SEQRES 2 B 183 ASP GLY LYS ILE ILE MET VAL SER PRO ASP ASP PRO LYS SEQRES 3 B 183 TYR ALA LEU LYS LYS ALA GLU GLU VAL ARG GLU LEU VAL SEQRES 4 B 183 ASP SER GLU LEU GLY PHE GLN GLN VAL SER LEU ARG CYS SEQRES 5 B 183 PRO SER GLN THR ARG THR TYR MET PHE VAL SER ASN GLU SEQRES 6 B 183 LYS LYS ILE VAL GLY CYS LEU ILE ALA GLU PRO ILE ARG SEQRES 7 B 183 GLU ALA TYR ARG VAL LEU ALA GLU PRO PRO SER LEU HIS SEQRES 8 B 183 SER LEU HIS GLY GLU PRO LEU GLU ARG HIS ARG ALA TRP SEQRES 9 B 183 ARG CYS SER THR GLU PRO GLU PRO ALA ILE CYS GLY ILE SEQRES 10 B 183 SER ARG ILE TRP VAL PHE ALA LEU MET ARG ARG LYS ALA SEQRES 11 B 183 ILE ALA SER ARG MET VAL ASP ALA VAL ARG SER SER PHE SEQRES 12 B 183 MET TYR GLY SER VAL LEU THR THR GLU GLU ILE ALA PHE SEQRES 13 B 183 SER ASP PRO THR PRO ASP GLY LYS LEU PHE ALA SER THR SEQRES 14 B 183 TYR CYS LYS VAL PRO ASP PHE LEU VAL TYR ASN PHE VAL SEQRES 15 B 183 SER SEQRES 1 C 183 GLY SER MET LYS LYS GLU ARG VAL ILE THR GLU PHE TRP SEQRES 2 C 183 ASP GLY LYS ILE ILE MET VAL SER PRO ASP ASP PRO LYS SEQRES 3 C 183 TYR ALA LEU LYS LYS ALA GLU GLU VAL ARG GLU LEU VAL SEQRES 4 C 183 ASP SER GLU LEU GLY PHE GLN GLN VAL SER LEU ARG CYS SEQRES 5 C 183 PRO SER GLN THR ARG THR TYR MET PHE VAL SER ASN GLU SEQRES 6 C 183 LYS LYS ILE VAL GLY CYS LEU ILE ALA GLU PRO ILE ARG SEQRES 7 C 183 GLU ALA TYR ARG VAL LEU ALA GLU PRO PRO SER LEU HIS SEQRES 8 C 183 SER LEU HIS GLY GLU PRO LEU GLU ARG HIS ARG ALA TRP SEQRES 9 C 183 ARG CYS SER THR GLU PRO GLU PRO ALA ILE CYS GLY ILE SEQRES 10 C 183 SER ARG ILE TRP VAL PHE ALA LEU MET ARG ARG LYS ALA SEQRES 11 C 183 ILE ALA SER ARG MET VAL ASP ALA VAL ARG SER SER PHE SEQRES 12 C 183 MET TYR GLY SER VAL LEU THR THR GLU GLU ILE ALA PHE SEQRES 13 C 183 SER ASP PRO THR PRO ASP GLY LYS LEU PHE ALA SER THR SEQRES 14 C 183 TYR CYS LYS VAL PRO ASP PHE LEU VAL TYR ASN PHE VAL SEQRES 15 C 183 SER SEQRES 1 D 183 GLY SER MET LYS LYS GLU ARG VAL ILE THR GLU PHE TRP SEQRES 2 D 183 ASP GLY LYS ILE ILE MET VAL SER PRO ASP ASP PRO LYS SEQRES 3 D 183 TYR ALA LEU LYS LYS ALA GLU GLU VAL ARG GLU LEU VAL SEQRES 4 D 183 ASP SER GLU LEU GLY PHE GLN GLN VAL SER LEU ARG CYS SEQRES 5 D 183 PRO SER GLN THR ARG THR TYR MET PHE VAL SER ASN GLU SEQRES 6 D 183 LYS LYS ILE VAL GLY CYS LEU ILE ALA GLU PRO ILE ARG SEQRES 7 D 183 GLU ALA TYR ARG VAL LEU ALA GLU PRO PRO SER LEU HIS SEQRES 8 D 183 SER LEU HIS GLY GLU PRO LEU GLU ARG HIS ARG ALA TRP SEQRES 9 D 183 ARG CYS SER THR GLU PRO GLU PRO ALA ILE CYS GLY ILE SEQRES 10 D 183 SER ARG ILE TRP VAL PHE ALA LEU MET ARG ARG LYS ALA SEQRES 11 D 183 ILE ALA SER ARG MET VAL ASP ALA VAL ARG SER SER PHE SEQRES 12 D 183 MET TYR GLY SER VAL LEU THR THR GLU GLU ILE ALA PHE SEQRES 13 D 183 SER ASP PRO THR PRO ASP GLY LYS LEU PHE ALA SER THR SEQRES 14 D 183 TYR CYS LYS VAL PRO ASP PHE LEU VAL TYR ASN PHE VAL SEQRES 15 D 183 SER SEQRES 1 E 13 ARG ARG VAL ILE GLY ALA LYS LYS ASP GLN TYR PHE LEU SEQRES 1 G 13 ARG ARG VAL ILE GLY ALA LYS LYS ASP GLN TYR PHE LEU SEQRES 1 J 13 ARG ARG VAL ILE GLY ALA LYS LYS ASP GLN TYR PHE LEU SEQRES 1 L 13 ARG ARG VAL ILE GLY ALA LYS LYS ASP GLN TYR PHE LEU HET 8HB E 201 87 HET 8HB G 201 87 HET 8HB J 101 87 HET 8HB L 101 87 HETNAM 8HB (2~{S})-2-[2-[3-[[(2~{R})-4-[[[(2~{R},3~{S},4~{R}, HETNAM 2 8HB 5~{R})-5-(6-AMINOPURIN-9-YL)-4-OXIDANYL-3- HETNAM 3 8HB PHOSPHONOOXY-OXOLAN-2-YL]METHOXY-OXIDANYL- HETNAM 4 8HB PHOSPHORYL]OXY-OXIDANYL-PHOSPHORYL]OXY-3,3-DIMETHYL-2- HETNAM 5 8HB OXIDANYL-BUTANOYL]AMINO]PROPANOYLAMINO]ETHYLSULFANYL]P HETNAM 6 8HB ROPANOIC ACID FORMUL 9 8HB 4(C24 H40 N7 O18 P3 S) FORMUL 13 HOH *264(H2 O) HELIX 1 AA1 PRO A 544 GLY A 563 1 20 HELIX 2 AA2 ALA A 643 ARG A 646 5 4 HELIX 3 AA3 ALA A 649 PHE A 662 1 14 HELIX 4 AA4 THR A 679 LYS A 691 1 13 HELIX 5 AA5 PRO B 544 GLY B 563 1 20 HELIX 6 AA6 CYS B 571 THR B 575 5 5 HELIX 7 AA7 ALA B 643 ARG B 646 5 4 HELIX 8 AA8 ALA B 649 PHE B 662 1 14 HELIX 9 AA9 THR B 679 LYS B 691 1 13 HELIX 10 AB1 PRO C 544 GLY C 563 1 20 HELIX 11 AB2 ALA C 643 ARG C 646 5 4 HELIX 12 AB3 ALA C 649 PHE C 662 1 14 HELIX 13 AB4 THR C 679 CYS C 690 1 12 HELIX 14 AB5 PRO D 544 GLY D 563 1 20 HELIX 15 AB6 CYS D 571 THR D 575 5 5 HELIX 16 AB7 ALA D 643 ARG D 646 5 4 HELIX 17 AB8 ALA D 649 PHE D 662 1 14 HELIX 18 AB9 THR D 679 LYS D 691 1 13 SHEET 1 AA1 9 VAL A 527 PHE A 531 0 SHEET 2 AA1 9 GLY A 534 VAL A 539 -1 O ILE A 536 N ILE A 528 SHEET 3 AA1 9 ARG A 576 SER A 582 -1 O VAL A 581 N LYS A 535 SHEET 4 AA1 9 ILE A 587 PRO A 595 -1 O ALA A 593 N ARG A 576 SHEET 5 AA1 9 CYS A 634 VAL A 641 -1 O GLY A 635 N GLU A 594 SHEET 6 AA1 9 ILE A 673 SER A 676 1 O ALA A 674 N ILE A 636 SHEET 7 AA1 9 LEU A 696 TYR A 698 1 O LEU A 696 N PHE A 675 SHEET 8 AA1 9 GLU A 598 ARG A 601 -1 N TYR A 600 O VAL A 697 SHEET 9 AA1 9 GLU A 630 PRO A 631 -1 O GLU A 630 N ALA A 599 SHEET 1 AA2 2 ALA A 622 ARG A 624 0 SHEET 2 AA2 2 GLN E 108 PHE E 110 1 O PHE E 110 N TRP A 623 SHEET 1 AA3 9 VAL B 527 PHE B 531 0 SHEET 2 AA3 9 GLY B 534 VAL B 539 -1 O ILE B 536 N ILE B 528 SHEET 3 AA3 9 ARG B 576 SER B 582 -1 O VAL B 581 N LYS B 535 SHEET 4 AA3 9 ILE B 587 PRO B 595 -1 O LEU B 591 N TYR B 578 SHEET 5 AA3 9 CYS B 634 VAL B 641 -1 O GLY B 635 N GLU B 594 SHEET 6 AA3 9 ILE B 673 SER B 676 1 O ALA B 674 N ILE B 636 SHEET 7 AA3 9 LEU B 696 TYR B 698 1 O LEU B 696 N PHE B 675 SHEET 8 AA3 9 GLU B 598 LEU B 603 -1 N TYR B 600 O VAL B 697 SHEET 9 AA3 9 ARG B 624 CYS B 625 -1 O ARG B 624 N LEU B 603 SHEET 1 AA4 9 VAL B 527 PHE B 531 0 SHEET 2 AA4 9 GLY B 534 VAL B 539 -1 O ILE B 536 N ILE B 528 SHEET 3 AA4 9 ARG B 576 SER B 582 -1 O VAL B 581 N LYS B 535 SHEET 4 AA4 9 ILE B 587 PRO B 595 -1 O LEU B 591 N TYR B 578 SHEET 5 AA4 9 CYS B 634 VAL B 641 -1 O GLY B 635 N GLU B 594 SHEET 6 AA4 9 ILE B 673 SER B 676 1 O ALA B 674 N ILE B 636 SHEET 7 AA4 9 LEU B 696 TYR B 698 1 O LEU B 696 N PHE B 675 SHEET 8 AA4 9 GLU B 598 LEU B 603 -1 N TYR B 600 O VAL B 697 SHEET 9 AA4 9 GLU B 630 PRO B 631 -1 O GLU B 630 N ALA B 599 SHEET 1 AA5 9 VAL C 527 PHE C 531 0 SHEET 2 AA5 9 GLY C 534 VAL C 539 -1 O ILE C 536 N ILE C 528 SHEET 3 AA5 9 ARG C 576 SER C 582 -1 O VAL C 581 N LYS C 535 SHEET 4 AA5 9 ILE C 587 PRO C 595 -1 O LEU C 591 N TYR C 578 SHEET 5 AA5 9 CYS C 634 VAL C 641 -1 O GLY C 635 N GLU C 594 SHEET 6 AA5 9 ILE C 673 SER C 676 1 O ALA C 674 N ILE C 636 SHEET 7 AA5 9 LEU C 696 TYR C 698 1 O LEU C 696 N PHE C 675 SHEET 8 AA5 9 GLU C 598 ARG C 601 -1 N TYR C 600 O VAL C 697 SHEET 9 AA5 9 GLU C 630 PRO C 631 -1 O GLU C 630 N ALA C 599 SHEET 1 AA6 2 ALA C 622 ARG C 624 0 SHEET 2 AA6 2 GLN G 108 PHE G 110 1 O GLN G 108 N TRP C 623 SHEET 1 AA7 9 VAL D 527 PHE D 531 0 SHEET 2 AA7 9 GLY D 534 VAL D 539 -1 O ILE D 536 N ILE D 528 SHEET 3 AA7 9 ARG D 576 SER D 582 -1 O VAL D 581 N LYS D 535 SHEET 4 AA7 9 ILE D 587 PRO D 595 -1 O LEU D 591 N TYR D 578 SHEET 5 AA7 9 CYS D 634 VAL D 641 -1 O GLY D 635 N GLU D 594 SHEET 6 AA7 9 ILE D 673 SER D 676 1 O ALA D 674 N ILE D 636 SHEET 7 AA7 9 LEU D 696 TYR D 698 1 O LEU D 696 N PHE D 675 SHEET 8 AA7 9 GLU D 598 LEU D 603 -1 N TYR D 600 O VAL D 697 SHEET 9 AA7 9 ARG D 624 CYS D 625 -1 O ARG D 624 N LEU D 603 SHEET 1 AA8 9 VAL D 527 PHE D 531 0 SHEET 2 AA8 9 GLY D 534 VAL D 539 -1 O ILE D 536 N ILE D 528 SHEET 3 AA8 9 ARG D 576 SER D 582 -1 O VAL D 581 N LYS D 535 SHEET 4 AA8 9 ILE D 587 PRO D 595 -1 O LEU D 591 N TYR D 578 SHEET 5 AA8 9 CYS D 634 VAL D 641 -1 O GLY D 635 N GLU D 594 SHEET 6 AA8 9 ILE D 673 SER D 676 1 O ALA D 674 N ILE D 636 SHEET 7 AA8 9 LEU D 696 TYR D 698 1 O LEU D 696 N PHE D 675 SHEET 8 AA8 9 GLU D 598 LEU D 603 -1 N TYR D 600 O VAL D 697 SHEET 9 AA8 9 GLU D 630 PRO D 631 -1 O GLU D 630 N ALA D 599 LINK NZ LYS E 106 C23 8HB E 201 1555 1555 1.43 LINK NZ LYS G 106 C23 8HB G 201 1555 1555 1.46 LINK NZ LYS J 2 C23 8HB J 101 1555 1555 1.44 LINK NZ LYS L 2 C23 8HB L 101 1555 1555 1.46 SITE 1 AC1 31 ILE A 636 SER A 637 ARG A 638 ILE A 639 SITE 2 AC1 31 TRP A 640 VAL A 641 ARG A 646 ARG A 647 SITE 3 AC1 31 LYS A 648 ALA A 649 ILE A 650 ALA A 651 SITE 4 AC1 31 SER A 652 SER A 676 ASP A 677 PRO A 678 SITE 5 AC1 31 THR A 679 ASP A 681 GLY A 682 LEU A 684 SITE 6 AC1 31 PHE A 685 THR A 688 HOH A 812 LYS B 648 SITE 7 AC1 31 ALA E 104 LYS E 105 ASP E 107 HOH E 301 SITE 8 AC1 31 HOH E 302 HOH E 303 HOH E 306 SITE 1 AC2 31 ILE C 636 SER C 637 ARG C 638 ILE C 639 SITE 2 AC2 31 TRP C 640 VAL C 641 ARG C 646 ARG C 647 SITE 3 AC2 31 LYS C 648 ALA C 649 ILE C 650 ALA C 651 SITE 4 AC2 31 SER C 652 SER C 676 ASP C 677 PRO C 678 SITE 5 AC2 31 THR C 679 ASP C 681 GLY C 682 PHE C 685 SITE 6 AC2 31 THR C 688 LYS D 648 ALA G 104 LYS G 105 SITE 7 AC2 31 ASP G 107 HOH G 301 HOH G 302 HOH G 303 SITE 8 AC2 31 HOH G 304 HOH G 305 HOH G 307 SITE 1 AC3 29 LYS A 648 LEU B 562 ILE B 636 SER B 637 SITE 2 AC3 29 ARG B 638 ILE B 639 TRP B 640 VAL B 641 SITE 3 AC3 29 ARG B 646 ARG B 647 LYS B 648 ALA B 649 SITE 4 AC3 29 ILE B 650 ALA B 651 SER B 652 SER B 676 SITE 5 AC3 29 ASP B 677 PRO B 678 THR B 679 ASP B 681 SITE 6 AC3 29 GLY B 682 LEU B 684 THR B 688 HOH J 201 SITE 7 AC3 29 HOH J 202 HOH J 203 HOH J 204 HOH J 205 SITE 8 AC3 29 HOH J 206 SITE 1 AC4 27 LYS C 648 LEU D 562 SER D 637 ARG D 638 SITE 2 AC4 27 ILE D 639 TRP D 640 VAL D 641 ARG D 646 SITE 3 AC4 27 ARG D 647 LYS D 648 ALA D 649 ILE D 650 SITE 4 AC4 27 ALA D 651 SER D 652 SER D 676 ASP D 677 SITE 5 AC4 27 THR D 679 ASP D 681 GLY D 682 LEU D 684 SITE 6 AC4 27 THR D 688 HOH D 808 HOH L 201 HOH L 202 SITE 7 AC4 27 HOH L 203 HOH L 204 HOH L 205 CRYST1 107.236 57.768 70.954 90.00 89.97 90.00 P 1 21 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009325 0.000000 -0.000004 0.00000 SCALE2 0.000000 0.017311 0.000000 0.00000 SCALE3 0.000000 0.000000 0.014094 0.00000