HEADER TRANSCRIPTION 07-FEB-17 5N2L
TITLE CRYSTAL STRUCTURE OF THE SECOND BROMODOMAIN OF HUMAN BRD2 IN COMPLEX
TITLE 2 WITH A TETRAHYDROQUINOLINE ANALOGUE
COMPND MOL_ID: 1;
COMPND 2 MOLECULE: BROMODOMAIN-CONTAINING PROTEIN 2;
COMPND 3 CHAIN: A, B, C, D;
COMPND 4 SYNONYM: O27.1.1,REALLY INTERESTING NEW GENE 3 PROTEIN;
COMPND 5 ENGINEERED: YES
SOURCE MOL_ID: 1;
SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS;
SOURCE 3 ORGANISM_COMMON: HUMAN;
SOURCE 4 ORGANISM_TAXID: 9606;
SOURCE 5 GENE: BRD2, KIAA9001, RING3;
SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI;
SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562;
SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID
KEYWDS TRANSCRIPTION, STRUCTURAL GENOMICS, STRUCTURAL GENOMICS CONSORTIUM,
KEYWDS 2 SGC
EXPDTA X-RAY DIFFRACTION
AUTHOR C.TALLANT,P.J.SLAVISH,P.SIEJKA,N.BHARATHAM,W.R.SHADRICK,S.CHAI,
AUTHOR 2 B.M.YOUNG,V.A.BOYD,C.HEROVEN,H.J.WIGGERS,S.PICAUD,O.FEDOROV,
AUTHOR 3 T.KROJER,T.CHEN,R.E.LEE,R.K.GUY,A.A.SHELAT,F.VON DELFT,
AUTHOR 4 C.H.ARROWSMITH,A.M.EDWARDS,C.BOUNTRA,S.KNAPP,STRUCTURAL GENOMICS
AUTHOR 5 CONSORTIUM (SGC)
REVDAT 3 17-JAN-24 5N2L 1 REMARK
REVDAT 2 03-OCT-18 5N2L 1 REMARK
REVDAT 1 28-FEB-18 5N2L 0
JRNL AUTH C.TALLANT,P.J.SLAVISH,P.SIEJKA,N.BHARATHAM,W.R.SHADRICK,
JRNL AUTH 2 S.CHAI,B.M.YOUNG,V.A.BOYD,C.HEROVEN,H.J.WIGGERS,S.PICAUD,
JRNL AUTH 3 O.FEDOROV,T.KROJER,T.CHEN,R.E.LEE,R.K.GUY,A.A.SHELAT,
JRNL AUTH 4 F.VON DELFT,C.H.ARROWSMITH,A.M.EDWARDS,C.BOUNTRA,S.KNAPP
JRNL TITL CRYSTAL STRUCTURE OF THE SECOND BROMODOMAIN OF HUMAN BRD2 IN
JRNL TITL 2 COMPLEX WITH A TETRAHYDROQUINOLINE ANALOGUE
JRNL REF TO BE PUBLISHED
JRNL REFN
REMARK 2
REMARK 2 RESOLUTION. 1.89 ANGSTROMS.
REMARK 3
REMARK 3 REFINEMENT.
REMARK 3 PROGRAM : REFMAC 5.7.0029
REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER,
REMARK 3 : NICHOLLS,WINN,LONG,VAGIN
REMARK 3
REMARK 3 REFINEMENT TARGET : NULL
REMARK 3
REMARK 3 DATA USED IN REFINEMENT.
REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.89
REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 28.95
REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL
REMARK 3 COMPLETENESS FOR RANGE (%) : 99.3
REMARK 3 NUMBER OF REFLECTIONS : 39476
REMARK 3
REMARK 3 FIT TO DATA USED IN REFINEMENT.
REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT
REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM
REMARK 3 R VALUE (WORKING + TEST SET) : 0.184
REMARK 3 R VALUE (WORKING SET) : 0.181
REMARK 3 FREE R VALUE : 0.233
REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.800
REMARK 3 FREE R VALUE TEST SET COUNT : 1999
REMARK 3
REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN.
REMARK 3 TOTAL NUMBER OF BINS USED : 20
REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.89
REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.94
REMARK 3 REFLECTION IN BIN (WORKING SET) : 2775
REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 95.50
REMARK 3 BIN R VALUE (WORKING SET) : 0.2570
REMARK 3 BIN FREE R VALUE SET COUNT : 152
REMARK 3 BIN FREE R VALUE : 0.3380
REMARK 3
REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT.
REMARK 3 PROTEIN ATOMS : 3586
REMARK 3 NUCLEIC ACID ATOMS : 0
REMARK 3 HETEROGEN ATOMS : 170
REMARK 3 SOLVENT ATOMS : 309
REMARK 3
REMARK 3 B VALUES.
REMARK 3 FROM WILSON PLOT (A**2) : 11.52
REMARK 3 MEAN B VALUE (OVERALL, A**2) : 22.59
REMARK 3 OVERALL ANISOTROPIC B VALUE.
REMARK 3 B11 (A**2) : -0.35000
REMARK 3 B22 (A**2) : -1.39000
REMARK 3 B33 (A**2) : 1.75000
REMARK 3 B12 (A**2) : 0.00000
REMARK 3 B13 (A**2) : -0.46000
REMARK 3 B23 (A**2) : 0.00000
REMARK 3
REMARK 3 ESTIMATED OVERALL COORDINATE ERROR.
REMARK 3 ESU BASED ON R VALUE (A): 0.147
REMARK 3 ESU BASED ON FREE R VALUE (A): 0.144
REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.097
REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 5.978
REMARK 3
REMARK 3 CORRELATION COEFFICIENTS.
REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.951
REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.923
REMARK 3
REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT
REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3864 ; 0.019 ; 0.019
REMARK 3 BOND LENGTHS OTHERS (A): 3634 ; 0.001 ; 0.020
REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5213 ; 1.933 ; 1.945
REMARK 3 BOND ANGLES OTHERS (DEGREES): 8359 ; 0.946 ; 3.000
REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 431 ; 5.517 ; 5.000
REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 189 ;31.817 ;23.439
REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 661 ;15.251 ;15.000
REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 24 ;18.425 ;15.000
REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 522 ; 0.120 ; 0.200
REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4583 ; 0.011 ; 0.021
REMARK 3 GENERAL PLANES OTHERS (A): 929 ; 0.001 ; 0.020
REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL
REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL
REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL
REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL
REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL
REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL
REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL
REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL
REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL
REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL
REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL
REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL
REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL
REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL
REMARK 3
REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT
REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL
REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL
REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL
REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL
REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL
REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL
REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL
REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL
REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL
REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL
REMARK 3
REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT
REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL
REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL
REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL
REMARK 3
REMARK 3 NCS RESTRAINTS STATISTICS
REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL
REMARK 3
REMARK 3 TLS DETAILS
REMARK 3 NUMBER OF TLS GROUPS : 4
REMARK 3
REMARK 3 TLS GROUP : 1
REMARK 3 NUMBER OF COMPONENTS GROUP : 1
REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI
REMARK 3 RESIDUE RANGE : A 346 A 454
REMARK 3 ORIGIN FOR THE GROUP (A): 27.9605 9.1143 14.5822
REMARK 3 T TENSOR
REMARK 3 T11: 0.0765 T22: 0.0772
REMARK 3 T33: 0.0117 T12: 0.0201
REMARK 3 T13: 0.0288 T23: 0.0045
REMARK 3 L TENSOR
REMARK 3 L11: 0.3461 L22: 0.4516
REMARK 3 L33: 1.9069 L12: -0.1667
REMARK 3 L13: -0.1918 L23: -0.3613
REMARK 3 S TENSOR
REMARK 3 S11: -0.0338 S12: 0.0186 S13: -0.0107
REMARK 3 S21: 0.0694 S22: 0.0923 S23: 0.0330
REMARK 3 S31: -0.0565 S32: 0.0325 S33: -0.0585
REMARK 3
REMARK 3 TLS GROUP : 2
REMARK 3 NUMBER OF COMPONENTS GROUP : 1
REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI
REMARK 3 RESIDUE RANGE : B 346 B 454
REMARK 3 ORIGIN FOR THE GROUP (A): 9.5946 30.4277 18.6372
REMARK 3 T TENSOR
REMARK 3 T11: 0.0779 T22: 0.0604
REMARK 3 T33: 0.1663 T12: 0.0017
REMARK 3 T13: -0.0520 T23: 0.0117
REMARK 3 L TENSOR
REMARK 3 L11: 0.2642 L22: 0.9819
REMARK 3 L33: 2.0254 L12: -0.4809
REMARK 3 L13: -0.2260 L23: 0.6016
REMARK 3 S TENSOR
REMARK 3 S11: -0.1219 S12: 0.0549 S13: -0.0204
REMARK 3 S21: 0.0920 S22: -0.1541 S23: 0.1361
REMARK 3 S31: -0.0214 S32: 0.1583 S33: 0.2760
REMARK 3
REMARK 3 TLS GROUP : 3
REMARK 3 NUMBER OF COMPONENTS GROUP : 1
REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI
REMARK 3 RESIDUE RANGE : C 348 C 454
REMARK 3 ORIGIN FOR THE GROUP (A): 41.7214 33.2546 22.8834
REMARK 3 T TENSOR
REMARK 3 T11: 0.0678 T22: 0.0612
REMARK 3 T33: 0.0497 T12: 0.0125
REMARK 3 T13: -0.0003 T23: -0.0027
REMARK 3 L TENSOR
REMARK 3 L11: 0.2230 L22: 1.5456
REMARK 3 L33: 0.6675 L12: -0.4463
REMARK 3 L13: 0.1309 L23: 0.3012
REMARK 3 S TENSOR
REMARK 3 S11: 0.0118 S12: -0.0101 S13: -0.0034
REMARK 3 S21: -0.0826 S22: 0.0686 S23: -0.0167
REMARK 3 S31: 0.0236 S32: 0.0534 S33: -0.0804
REMARK 3
REMARK 3 TLS GROUP : 4
REMARK 3 NUMBER OF COMPONENTS GROUP : 1
REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI
REMARK 3 RESIDUE RANGE : D 347 D 454
REMARK 3 ORIGIN FOR THE GROUP (A): 60.4135 12.4442 21.4938
REMARK 3 T TENSOR
REMARK 3 T11: 0.0354 T22: 0.0767
REMARK 3 T33: 0.0689 T12: 0.0115
REMARK 3 T13: -0.0078 T23: -0.0070
REMARK 3 L TENSOR
REMARK 3 L11: 0.8552 L22: 0.5819
REMARK 3 L33: 1.0292 L12: -0.6232
REMARK 3 L13: 0.4635 L23: -0.1836
REMARK 3 S TENSOR
REMARK 3 S11: -0.0714 S12: -0.0829 S13: 0.0403
REMARK 3 S21: 0.0378 S22: -0.0026 S23: -0.0794
REMARK 3 S31: -0.0105 S32: -0.1479 S33: 0.0740
REMARK 3
REMARK 3 BULK SOLVENT MODELLING.
REMARK 3 METHOD USED : NULL
REMARK 3 PARAMETERS FOR MASK CALCULATION
REMARK 3 VDW PROBE RADIUS : 1.20
REMARK 3 ION PROBE RADIUS : 0.80
REMARK 3 SHRINKAGE RADIUS : 0.80
REMARK 3
REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING
REMARK 3 POSITIONS
REMARK 4
REMARK 4 5N2L COMPLIES WITH FORMAT V. 3.30, 13-JUL-11
REMARK 100
REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 08-FEB-17.
REMARK 100 THE DEPOSITION ID IS D_1200003397.
REMARK 200
REMARK 200 EXPERIMENTAL DETAILS
REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION
REMARK 200 DATE OF DATA COLLECTION : 30-NOV-14
REMARK 200 TEMPERATURE (KELVIN) : 100
REMARK 200 PH : 5.5 - 7.5
REMARK 200 NUMBER OF CRYSTALS USED : 1
REMARK 200
REMARK 200 SYNCHROTRON (Y/N) : Y
REMARK 200 RADIATION SOURCE : DIAMOND
REMARK 200 BEAMLINE : I02
REMARK 200 X-RAY GENERATOR MODEL : NULL
REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M
REMARK 200 WAVELENGTH OR RANGE (A) : 0.9794
REMARK 200 MONOCHROMATOR : NULL
REMARK 200 OPTICS : NULL
REMARK 200
REMARK 200 DETECTOR TYPE : PIXEL
REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M
REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS
REMARK 200 DATA SCALING SOFTWARE : AIMLESS
REMARK 200
REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 41476
REMARK 200 RESOLUTION RANGE HIGH (A) : 1.890
REMARK 200 RESOLUTION RANGE LOW (A) : 28.950
REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL
REMARK 200
REMARK 200 OVERALL.
REMARK 200 COMPLETENESS FOR RANGE (%) : 99.2
REMARK 200 DATA REDUNDANCY : 6.500
REMARK 200 R MERGE (I) : 0.20000
REMARK 200 R SYM (I) : NULL
REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 11.5000
REMARK 200
REMARK 200 IN THE HIGHEST RESOLUTION SHELL.
REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.89
REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.94
REMARK 200 COMPLETENESS FOR SHELL (%) : 94.2
REMARK 200 DATA REDUNDANCY IN SHELL : 6.00
REMARK 200 R MERGE FOR SHELL (I) : 1.91400
REMARK 200 R SYM FOR SHELL (I) : NULL
REMARK 200 <I/SIGMA(I)> FOR SHELL : 2.700
REMARK 200
REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH
REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT
REMARK 200 SOFTWARE USED: PHASER
REMARK 200 STARTING MODEL: 2DVV
REMARK 200
REMARK 200 REMARK: NULL
REMARK 280
REMARK 280 CRYSTAL
REMARK 280 SOLVENT CONTENT, VS (%): 50.82
REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.50
REMARK 280
REMARK 280 CRYSTALLIZATION CONDITIONS: 25% PEG3350, 0.2 M AMMONIUM SULFATE,
REMARK 280 0.1 M BIS-TRIS PH 5.5, PH 7.5, VAPOR DIFFUSION, SITTING DROP,
REMARK 280 TEMPERATURE 277.15K
REMARK 290
REMARK 290 CRYSTALLOGRAPHIC SYMMETRY
REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1
REMARK 290
REMARK 290 SYMOP SYMMETRY
REMARK 290 NNNMMM OPERATOR
REMARK 290 1555 X,Y,Z
REMARK 290 2555 -X,Y,-Z
REMARK 290 3555 X+1/2,Y+1/2,Z
REMARK 290 4555 -X+1/2,Y+1/2,-Z
REMARK 290
REMARK 290 WHERE NNN -> OPERATOR NUMBER
REMARK 290 MMM -> TRANSLATION VECTOR
REMARK 290
REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS
REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM
REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY
REMARK 290 RELATED MOLECULES.
REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000
REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000
REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000
REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000
REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000
REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000
REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 73.62200
REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 47.20450
REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000
REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 73.62200
REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 47.20450
REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000
REMARK 290
REMARK 290 REMARK: NULL
REMARK 300
REMARK 300 BIOMOLECULE: 1, 2, 3, 4
REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM
REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN
REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON
REMARK 300 BURIED SURFACE AREA.
REMARK 350
REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN
REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE
REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS
REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND
REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN.
REMARK 350
REMARK 350 BIOMOLECULE: 1
REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC
REMARK 350 APPLY THE FOLLOWING TO CHAINS: A
REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000
REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000
REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000
REMARK 350
REMARK 350 BIOMOLECULE: 2
REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC
REMARK 350 APPLY THE FOLLOWING TO CHAINS: B
REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000
REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000
REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000
REMARK 350
REMARK 350 BIOMOLECULE: 3
REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC
REMARK 350 APPLY THE FOLLOWING TO CHAINS: C
REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000
REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000
REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000
REMARK 350
REMARK 350 BIOMOLECULE: 4
REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC
REMARK 350 APPLY THE FOLLOWING TO CHAINS: D
REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000
REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000
REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000
REMARK 375
REMARK 375 SPECIAL POSITION
REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS
REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL
REMARK 375 POSITIONS.
REMARK 375
REMARK 375 ATOM RES CSSEQI
REMARK 375 HOH D 666 LIES ON A SPECIAL POSITION.
REMARK 465
REMARK 465 MISSING RESIDUES
REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE
REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN
REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.)
REMARK 465
REMARK 465 M RES C SSSEQI
REMARK 465 SER A 342
REMARK 465 MET A 343
REMARK 465 GLY A 344
REMARK 465 LYS A 345
REMARK 465 ASP A 455
REMARK 465 SER B 342
REMARK 465 MET B 343
REMARK 465 GLY B 344
REMARK 465 LYS B 345
REMARK 465 ASP B 455
REMARK 465 SER C 342
REMARK 465 MET C 343
REMARK 465 GLY C 344
REMARK 465 LYS C 345
REMARK 465 LEU C 346
REMARK 465 SER C 347
REMARK 465 ASP C 455
REMARK 465 SER D 342
REMARK 465 MET D 343
REMARK 465 GLY D 344
REMARK 465 LYS D 345
REMARK 465 LEU D 346
REMARK 465 ASP D 455
REMARK 500
REMARK 500 GEOMETRY AND STEREOCHEMISTRY
REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT
REMARK 500
REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT.
REMARK 500
REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE
REMARK 500 NH2 ARG B 409 O HOH B 601 1.94
REMARK 500 NH1 ARG A 406 O HOH A 601 2.17
REMARK 500
REMARK 500 REMARK: NULL
REMARK 500
REMARK 500 GEOMETRY AND STEREOCHEMISTRY
REMARK 500 SUBTOPIC: COVALENT BOND ANGLES
REMARK 500
REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES
REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE
REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN
REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE).
REMARK 500
REMARK 500 STANDARD TABLE:
REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1)
REMARK 500
REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999
REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996
REMARK 500
REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3
REMARK 500 ARG A 409 NE - CZ - NH1 ANGL. DEV. = 3.7 DEGREES
REMARK 500 ASP A 444 CB - CG - OD1 ANGL. DEV. = 6.2 DEGREES
REMARK 500 ARG B 440 NE - CZ - NH1 ANGL. DEV. = 3.5 DEGREES
REMARK 500 ARG C 449 NE - CZ - NH1 ANGL. DEV. = 3.6 DEGREES
REMARK 500 ARG D 409 NE - CZ - NH2 ANGL. DEV. = -3.5 DEGREES
REMARK 500 ARG D 440 NE - CZ - NH1 ANGL. DEV. = 3.4 DEGREES
REMARK 500
REMARK 500 REMARK: NULL
REMARK 500
REMARK 500 GEOMETRY AND STEREOCHEMISTRY
REMARK 500 SUBTOPIC: TORSION ANGLES
REMARK 500
REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS:
REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER;
REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE).
REMARK 500
REMARK 500 STANDARD TABLE:
REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2)
REMARK 500
REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI-
REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400
REMARK 500
REMARK 500 M RES CSSEQI PSI PHI
REMARK 500 PRO C 430 150.34 -48.44
REMARK 500
REMARK 500 REMARK: NULL
REMARK 800
REMARK 800 SITE
REMARK 800 SITE_IDENTIFIER: AC1
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 501
REMARK 800
REMARK 800 SITE_IDENTIFIER: AC2
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 502
REMARK 800
REMARK 800 SITE_IDENTIFIER: AC3
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 503
REMARK 800
REMARK 800 SITE_IDENTIFIER: AC4
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: binding site for residue 8J2 A 504
REMARK 800
REMARK 800 SITE_IDENTIFIER: AC5
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 B 501
REMARK 800
REMARK 800 SITE_IDENTIFIER: AC6
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 B 502
REMARK 800
REMARK 800 SITE_IDENTIFIER: AC7
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 B 503
REMARK 800
REMARK 800 SITE_IDENTIFIER: AC8
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: binding site for residue 8J2 B 504
REMARK 800
REMARK 800 SITE_IDENTIFIER: AC9
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 C 501
REMARK 800
REMARK 800 SITE_IDENTIFIER: AD1
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: binding site for residue EDO C 502
REMARK 800
REMARK 800 SITE_IDENTIFIER: AD2
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: binding site for residue 8J2 C 503
REMARK 800
REMARK 800 SITE_IDENTIFIER: AD3
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: binding site for residue 8J2 C 504
REMARK 800
REMARK 800 SITE_IDENTIFIER: AD4
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 D 501
REMARK 800
REMARK 800 SITE_IDENTIFIER: AD5
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: binding site for residue EDO D 502
DBREF 5N2L A 344 455 UNP P25440 BRD2_HUMAN 344 455
DBREF 5N2L B 344 455 UNP P25440 BRD2_HUMAN 344 455
DBREF 5N2L C 344 455 UNP P25440 BRD2_HUMAN 344 455
DBREF 5N2L D 344 455 UNP P25440 BRD2_HUMAN 344 455
SEQADV 5N2L SER A 342 UNP P25440 EXPRESSION TAG
SEQADV 5N2L MET A 343 UNP P25440 EXPRESSION TAG
SEQADV 5N2L SER B 342 UNP P25440 EXPRESSION TAG
SEQADV 5N2L MET B 343 UNP P25440 EXPRESSION TAG
SEQADV 5N2L SER C 342 UNP P25440 EXPRESSION TAG
SEQADV 5N2L MET C 343 UNP P25440 EXPRESSION TAG
SEQADV 5N2L SER D 342 UNP P25440 EXPRESSION TAG
SEQADV 5N2L MET D 343 UNP P25440 EXPRESSION TAG
SEQRES 1 A 114 SER MET GLY LYS LEU SER GLU GLN LEU LYS HIS CYS ASN
SEQRES 2 A 114 GLY ILE LEU LYS GLU LEU LEU SER LYS LYS HIS ALA ALA
SEQRES 3 A 114 TYR ALA TRP PRO PHE TYR LYS PRO VAL ASP ALA SER ALA
SEQRES 4 A 114 LEU GLY LEU HIS ASP TYR HIS ASP ILE ILE LYS HIS PRO
SEQRES 5 A 114 MET ASP LEU SER THR VAL LYS ARG LYS MET GLU ASN ARG
SEQRES 6 A 114 ASP TYR ARG ASP ALA GLN GLU PHE ALA ALA ASP VAL ARG
SEQRES 7 A 114 LEU MET PHE SER ASN CYS TYR LYS TYR ASN PRO PRO ASP
SEQRES 8 A 114 HIS ASP VAL VAL ALA MET ALA ARG LYS LEU GLN ASP VAL
SEQRES 9 A 114 PHE GLU PHE ARG TYR ALA LYS MET PRO ASP
SEQRES 1 B 114 SER MET GLY LYS LEU SER GLU GLN LEU LYS HIS CYS ASN
SEQRES 2 B 114 GLY ILE LEU LYS GLU LEU LEU SER LYS LYS HIS ALA ALA
SEQRES 3 B 114 TYR ALA TRP PRO PHE TYR LYS PRO VAL ASP ALA SER ALA
SEQRES 4 B 114 LEU GLY LEU HIS ASP TYR HIS ASP ILE ILE LYS HIS PRO
SEQRES 5 B 114 MET ASP LEU SER THR VAL LYS ARG LYS MET GLU ASN ARG
SEQRES 6 B 114 ASP TYR ARG ASP ALA GLN GLU PHE ALA ALA ASP VAL ARG
SEQRES 7 B 114 LEU MET PHE SER ASN CYS TYR LYS TYR ASN PRO PRO ASP
SEQRES 8 B 114 HIS ASP VAL VAL ALA MET ALA ARG LYS LEU GLN ASP VAL
SEQRES 9 B 114 PHE GLU PHE ARG TYR ALA LYS MET PRO ASP
SEQRES 1 C 114 SER MET GLY LYS LEU SER GLU GLN LEU LYS HIS CYS ASN
SEQRES 2 C 114 GLY ILE LEU LYS GLU LEU LEU SER LYS LYS HIS ALA ALA
SEQRES 3 C 114 TYR ALA TRP PRO PHE TYR LYS PRO VAL ASP ALA SER ALA
SEQRES 4 C 114 LEU GLY LEU HIS ASP TYR HIS ASP ILE ILE LYS HIS PRO
SEQRES 5 C 114 MET ASP LEU SER THR VAL LYS ARG LYS MET GLU ASN ARG
SEQRES 6 C 114 ASP TYR ARG ASP ALA GLN GLU PHE ALA ALA ASP VAL ARG
SEQRES 7 C 114 LEU MET PHE SER ASN CYS TYR LYS TYR ASN PRO PRO ASP
SEQRES 8 C 114 HIS ASP VAL VAL ALA MET ALA ARG LYS LEU GLN ASP VAL
SEQRES 9 C 114 PHE GLU PHE ARG TYR ALA LYS MET PRO ASP
SEQRES 1 D 114 SER MET GLY LYS LEU SER GLU GLN LEU LYS HIS CYS ASN
SEQRES 2 D 114 GLY ILE LEU LYS GLU LEU LEU SER LYS LYS HIS ALA ALA
SEQRES 3 D 114 TYR ALA TRP PRO PHE TYR LYS PRO VAL ASP ALA SER ALA
SEQRES 4 D 114 LEU GLY LEU HIS ASP TYR HIS ASP ILE ILE LYS HIS PRO
SEQRES 5 D 114 MET ASP LEU SER THR VAL LYS ARG LYS MET GLU ASN ARG
SEQRES 6 D 114 ASP TYR ARG ASP ALA GLN GLU PHE ALA ALA ASP VAL ARG
SEQRES 7 D 114 LEU MET PHE SER ASN CYS TYR LYS TYR ASN PRO PRO ASP
SEQRES 8 D 114 HIS ASP VAL VAL ALA MET ALA ARG LYS LEU GLN ASP VAL
SEQRES 9 D 114 PHE GLU PHE ARG TYR ALA LYS MET PRO ASP
HET SO4 A 501 5
HET EDO A 502 4
HET EDO A 503 4
HET 8J2 A 504 31
HET SO4 B 501 5
HET SO4 B 502 5
HET SO4 B 503 5
HET 8J2 B 504 31
HET SO4 C 501 5
HET EDO C 502 4
HET 8J2 C 503 31
HET 8J2 C 504 31
HET SO4 D 501 5
HET EDO D 502 4
HETNAM SO4 SULFATE ION
HETNAM EDO 1,2-ETHANEDIOL
HETNAM 8J2 PROPAN-2-YL ~{N}-[(2~{S},4~{R})-6-(3-ACETAMIDOPHENYL)-
HETNAM 2 8J2 1-ETHANOYL-2-METHYL-3,4-DIHYDRO-2~{H}-QUINOLIN-4-
HETNAM 3 8J2 YL]CARBAMATE
HETSYN EDO ETHYLENE GLYCOL
FORMUL 5 SO4 6(O4 S 2-)
FORMUL 6 EDO 4(C2 H6 O2)
FORMUL 8 8J2 4(C24 H29 N3 O4)
FORMUL 19 HOH *309(H2 O)
HELIX 1 AA1 LEU A 346 LEU A 361 1 16
HELIX 2 AA2 SER A 362 LYS A 364 5 3
HELIX 3 AA3 HIS A 365 TRP A 370 1 6
HELIX 4 AA4 PRO A 371 TYR A 373 5 3
HELIX 5 AA5 ASP A 377 GLY A 382 1 6
HELIX 6 AA6 ASP A 385 ILE A 390 1 6
HELIX 7 AA7 ASP A 395 ASN A 405 1 11
HELIX 8 AA8 ASP A 410 ASN A 429 1 20
HELIX 9 AA9 HIS A 433 LYS A 452 1 20
HELIX 10 AB1 SER B 347 LEU B 361 1 15
HELIX 11 AB2 SER B 362 LYS B 364 5 3
HELIX 12 AB3 HIS B 365 TRP B 370 1 6
HELIX 13 AB4 PRO B 371 TYR B 373 5 3
HELIX 14 AB5 ASP B 377 GLY B 382 1 6
HELIX 15 AB6 ASP B 385 ILE B 390 1 6
HELIX 16 AB7 ASP B 395 ASN B 405 1 11
HELIX 17 AB8 ASP B 410 ASN B 429 1 20
HELIX 18 AB9 HIS B 433 LYS B 452 1 20
HELIX 19 AC1 GLN C 349 LEU C 361 1 13
HELIX 20 AC2 SER C 362 LYS C 364 5 3
HELIX 21 AC3 HIS C 365 TRP C 370 1 6
HELIX 22 AC4 PRO C 371 TYR C 373 5 3
HELIX 23 AC5 ASP C 385 ILE C 390 1 6
HELIX 24 AC6 ASP C 395 ASN C 405 1 11
HELIX 25 AC7 ASP C 410 ASN C 429 1 20
HELIX 26 AC8 HIS C 433 MET C 453 1 21
HELIX 27 AC9 GLU D 348 LEU D 361 1 14
HELIX 28 AD1 SER D 362 LYS D 364 5 3
HELIX 29 AD2 HIS D 365 TRP D 370 1 6
HELIX 30 AD3 PRO D 371 TYR D 373 5 3
HELIX 31 AD4 ASP D 377 GLY D 382 1 6
HELIX 32 AD5 ASP D 385 ILE D 390 1 6
HELIX 33 AD6 ASP D 395 ASN D 405 1 11
HELIX 34 AD7 ASP D 410 ASN D 429 1 20
HELIX 35 AD8 HIS D 433 LYS D 452 1 20
SITE 1 AC1 4 HIS A 365 VAL A 445 ARG A 449 ARG C 440
SITE 1 AC2 4 SER A 362 LYS A 363 LYS A 364 HOH A 648
SITE 1 AC3 3 SER A 379 MET C 394 LYS C 402
SITE 1 AC4 16 TRP A 370 PRO A 371 PHE A 372 LEU A 383
SITE 2 AC4 16 CYS A 425 ASN A 429 HIS A 433 VAL A 435
SITE 3 AC4 16 HOH A 604 HOH A 607 HOH A 615 HOH A 637
SITE 4 AC4 16 HOH A 659 LYS B 363 TRP B 370 TYR B 373
SITE 1 AC5 5 LYS B 364 HIS B 365 ARG B 440 ARG B 449
SITE 2 AC5 5 HOH B 628
SITE 1 AC6 5 VAL B 376 ASP B 377 ALA B 378 SER B 379
SITE 2 AC6 5 HIS B 387
SITE 1 AC7 4 SER B 362 LYS B 363 HIS B 384 HOH B 620
SITE 1 AC8 15 LYS A 363 TYR A 373 HOH A 630 TRP B 370
SITE 2 AC8 15 PRO B 371 PHE B 372 LEU B 381 LEU B 383
SITE 3 AC8 15 CYS B 425 ASN B 429 HIS B 433 MET B 438
SITE 4 AC8 15 HOH B 615 HOH B 639 HOH B 640
SITE 1 AC9 4 ARG A 440 LYS C 364 HIS C 365 ARG C 449
SITE 1 AD1 4 VAL C 376 ALA C 378 SER C 379 HIS C 387
SITE 1 AD2 14 TRP C 370 PRO C 371 PHE C 372 LEU C 383
SITE 2 AD2 14 CYS C 425 ASN C 429 HIS C 433 ASP C 434
SITE 3 AD2 14 MET C 438 HOH C 605 HOH C 634 HOH C 665
SITE 4 AD2 14 LYS D 363 TYR D 373
SITE 1 AD3 13 TYR C 373 HOH C 639 HOH C 647 HOH C 648
SITE 2 AD3 13 TRP D 370 PRO D 371 PHE D 372 LEU D 383
SITE 3 AD3 13 CYS D 425 ASN D 429 HIS D 433 MET D 438
SITE 4 AD3 13 HOH D 617
SITE 1 AD4 5 LYS D 364 HIS D 365 ARG D 440 VAL D 445
SITE 2 AD4 5 ARG D 449
SITE 1 AD5 3 ALA D 437 LYS D 441 HOH D 601
CRYST1 147.244 94.409 38.585 90.00 95.43 90.00 C 1 2 1 16
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 0.006791 0.000000 0.000646 0.00000
SCALE2 0.000000 0.010592 0.000000 0.00000
SCALE3 0.000000 0.000000 0.026034 0.00000