HEADER TRANSCRIPTION 07-FEB-17 5N2L TITLE CRYSTAL STRUCTURE OF THE SECOND BROMODOMAIN OF HUMAN BRD2 IN COMPLEX TITLE 2 WITH A TETRAHYDROQUINOLINE ANALOGUE COMPND MOL_ID: 1; COMPND 2 MOLECULE: BROMODOMAIN-CONTAINING PROTEIN 2; COMPND 3 CHAIN: A, B, C, D; COMPND 4 SYNONYM: O27.1.1,REALLY INTERESTING NEW GENE 3 PROTEIN; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: BRD2, KIAA9001, RING3; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID KEYWDS TRANSCRIPTION, STRUCTURAL GENOMICS, STRUCTURAL GENOMICS CONSORTIUM, KEYWDS 2 SGC EXPDTA X-RAY DIFFRACTION AUTHOR C.TALLANT,P.J.SLAVISH,P.SIEJKA,N.BHARATHAM,W.R.SHADRICK,S.CHAI, AUTHOR 2 B.M.YOUNG,V.A.BOYD,C.HEROVEN,H.J.WIGGERS,S.PICAUD,O.FEDOROV, AUTHOR 3 T.KROJER,T.CHEN,R.E.LEE,R.K.GUY,A.A.SHELAT,F.VON DELFT, AUTHOR 4 C.H.ARROWSMITH,A.M.EDWARDS,C.BOUNTRA,S.KNAPP,STRUCTURAL GENOMICS AUTHOR 5 CONSORTIUM (SGC) REVDAT 3 17-JAN-24 5N2L 1 REMARK REVDAT 2 03-OCT-18 5N2L 1 REMARK REVDAT 1 28-FEB-18 5N2L 0 JRNL AUTH C.TALLANT,P.J.SLAVISH,P.SIEJKA,N.BHARATHAM,W.R.SHADRICK, JRNL AUTH 2 S.CHAI,B.M.YOUNG,V.A.BOYD,C.HEROVEN,H.J.WIGGERS,S.PICAUD, JRNL AUTH 3 O.FEDOROV,T.KROJER,T.CHEN,R.E.LEE,R.K.GUY,A.A.SHELAT, JRNL AUTH 4 F.VON DELFT,C.H.ARROWSMITH,A.M.EDWARDS,C.BOUNTRA,S.KNAPP JRNL TITL CRYSTAL STRUCTURE OF THE SECOND BROMODOMAIN OF HUMAN BRD2 IN JRNL TITL 2 COMPLEX WITH A TETRAHYDROQUINOLINE ANALOGUE JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.89 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.7.0029 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.89 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 28.95 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.3 REMARK 3 NUMBER OF REFLECTIONS : 39476 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.184 REMARK 3 R VALUE (WORKING SET) : 0.181 REMARK 3 FREE R VALUE : 0.233 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.800 REMARK 3 FREE R VALUE TEST SET COUNT : 1999 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.89 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.94 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2775 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 95.50 REMARK 3 BIN R VALUE (WORKING SET) : 0.2570 REMARK 3 BIN FREE R VALUE SET COUNT : 152 REMARK 3 BIN FREE R VALUE : 0.3380 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3586 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 170 REMARK 3 SOLVENT ATOMS : 309 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 11.52 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 22.59 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.35000 REMARK 3 B22 (A**2) : -1.39000 REMARK 3 B33 (A**2) : 1.75000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -0.46000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.147 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.144 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.097 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 5.978 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.951 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.923 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3864 ; 0.019 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 3634 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5213 ; 1.933 ; 1.945 REMARK 3 BOND ANGLES OTHERS (DEGREES): 8359 ; 0.946 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 431 ; 5.517 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 189 ;31.817 ;23.439 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 661 ;15.251 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 24 ;18.425 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 522 ; 0.120 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4583 ; 0.011 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 929 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 346 A 454 REMARK 3 ORIGIN FOR THE GROUP (A): 27.9605 9.1143 14.5822 REMARK 3 T TENSOR REMARK 3 T11: 0.0765 T22: 0.0772 REMARK 3 T33: 0.0117 T12: 0.0201 REMARK 3 T13: 0.0288 T23: 0.0045 REMARK 3 L TENSOR REMARK 3 L11: 0.3461 L22: 0.4516 REMARK 3 L33: 1.9069 L12: -0.1667 REMARK 3 L13: -0.1918 L23: -0.3613 REMARK 3 S TENSOR REMARK 3 S11: -0.0338 S12: 0.0186 S13: -0.0107 REMARK 3 S21: 0.0694 S22: 0.0923 S23: 0.0330 REMARK 3 S31: -0.0565 S32: 0.0325 S33: -0.0585 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 346 B 454 REMARK 3 ORIGIN FOR THE GROUP (A): 9.5946 30.4277 18.6372 REMARK 3 T TENSOR REMARK 3 T11: 0.0779 T22: 0.0604 REMARK 3 T33: 0.1663 T12: 0.0017 REMARK 3 T13: -0.0520 T23: 0.0117 REMARK 3 L TENSOR REMARK 3 L11: 0.2642 L22: 0.9819 REMARK 3 L33: 2.0254 L12: -0.4809 REMARK 3 L13: -0.2260 L23: 0.6016 REMARK 3 S TENSOR REMARK 3 S11: -0.1219 S12: 0.0549 S13: -0.0204 REMARK 3 S21: 0.0920 S22: -0.1541 S23: 0.1361 REMARK 3 S31: -0.0214 S32: 0.1583 S33: 0.2760 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : C 348 C 454 REMARK 3 ORIGIN FOR THE GROUP (A): 41.7214 33.2546 22.8834 REMARK 3 T TENSOR REMARK 3 T11: 0.0678 T22: 0.0612 REMARK 3 T33: 0.0497 T12: 0.0125 REMARK 3 T13: -0.0003 T23: -0.0027 REMARK 3 L TENSOR REMARK 3 L11: 0.2230 L22: 1.5456 REMARK 3 L33: 0.6675 L12: -0.4463 REMARK 3 L13: 0.1309 L23: 0.3012 REMARK 3 S TENSOR REMARK 3 S11: 0.0118 S12: -0.0101 S13: -0.0034 REMARK 3 S21: -0.0826 S22: 0.0686 S23: -0.0167 REMARK 3 S31: 0.0236 S32: 0.0534 S33: -0.0804 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : D 347 D 454 REMARK 3 ORIGIN FOR THE GROUP (A): 60.4135 12.4442 21.4938 REMARK 3 T TENSOR REMARK 3 T11: 0.0354 T22: 0.0767 REMARK 3 T33: 0.0689 T12: 0.0115 REMARK 3 T13: -0.0078 T23: -0.0070 REMARK 3 L TENSOR REMARK 3 L11: 0.8552 L22: 0.5819 REMARK 3 L33: 1.0292 L12: -0.6232 REMARK 3 L13: 0.4635 L23: -0.1836 REMARK 3 S TENSOR REMARK 3 S11: -0.0714 S12: -0.0829 S13: 0.0403 REMARK 3 S21: 0.0378 S22: -0.0026 S23: -0.0794 REMARK 3 S31: -0.0105 S32: -0.1479 S33: 0.0740 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 5N2L COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 08-FEB-17. REMARK 100 THE DEPOSITION ID IS D_1200003397. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 30-NOV-14 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.5 - 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I02 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9794 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 41476 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.890 REMARK 200 RESOLUTION RANGE LOW (A) : 28.950 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.2 REMARK 200 DATA REDUNDANCY : 6.500 REMARK 200 R MERGE (I) : 0.20000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 11.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.89 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.94 REMARK 200 COMPLETENESS FOR SHELL (%) : 94.2 REMARK 200 DATA REDUNDANCY IN SHELL : 6.00 REMARK 200 R MERGE FOR SHELL (I) : 1.91400 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.700 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 2DVV REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 50.82 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.50 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 25% PEG3350, 0.2 M AMMONIUM SULFATE, REMARK 280 0.1 M BIS-TRIS PH 5.5, PH 7.5, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 277.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 73.62200 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 47.20450 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 73.62200 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 47.20450 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3, 4 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 4 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH D 666 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A 342 REMARK 465 MET A 343 REMARK 465 GLY A 344 REMARK 465 LYS A 345 REMARK 465 ASP A 455 REMARK 465 SER B 342 REMARK 465 MET B 343 REMARK 465 GLY B 344 REMARK 465 LYS B 345 REMARK 465 ASP B 455 REMARK 465 SER C 342 REMARK 465 MET C 343 REMARK 465 GLY C 344 REMARK 465 LYS C 345 REMARK 465 LEU C 346 REMARK 465 SER C 347 REMARK 465 ASP C 455 REMARK 465 SER D 342 REMARK 465 MET D 343 REMARK 465 GLY D 344 REMARK 465 LYS D 345 REMARK 465 LEU D 346 REMARK 465 ASP D 455 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 NH2 ARG B 409 O HOH B 601 1.94 REMARK 500 NH1 ARG A 406 O HOH A 601 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 409 NE - CZ - NH1 ANGL. DEV. = 3.7 DEGREES REMARK 500 ASP A 444 CB - CG - OD1 ANGL. DEV. = 6.2 DEGREES REMARK 500 ARG B 440 NE - CZ - NH1 ANGL. DEV. = 3.5 DEGREES REMARK 500 ARG C 449 NE - CZ - NH1 ANGL. DEV. = 3.6 DEGREES REMARK 500 ARG D 409 NE - CZ - NH2 ANGL. DEV. = -3.5 DEGREES REMARK 500 ARG D 440 NE - CZ - NH1 ANGL. DEV. = 3.4 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PRO C 430 150.34 -48.44 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 503 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 8J2 A 504 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 B 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 B 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 B 503 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 8J2 B 504 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 C 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO C 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 8J2 C 503 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 8J2 C 504 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 D 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO D 502 DBREF 5N2L A 344 455 UNP P25440 BRD2_HUMAN 344 455 DBREF 5N2L B 344 455 UNP P25440 BRD2_HUMAN 344 455 DBREF 5N2L C 344 455 UNP P25440 BRD2_HUMAN 344 455 DBREF 5N2L D 344 455 UNP P25440 BRD2_HUMAN 344 455 SEQADV 5N2L SER A 342 UNP P25440 EXPRESSION TAG SEQADV 5N2L MET A 343 UNP P25440 EXPRESSION TAG SEQADV 5N2L SER B 342 UNP P25440 EXPRESSION TAG SEQADV 5N2L MET B 343 UNP P25440 EXPRESSION TAG SEQADV 5N2L SER C 342 UNP P25440 EXPRESSION TAG SEQADV 5N2L MET C 343 UNP P25440 EXPRESSION TAG SEQADV 5N2L SER D 342 UNP P25440 EXPRESSION TAG SEQADV 5N2L MET D 343 UNP P25440 EXPRESSION TAG SEQRES 1 A 114 SER MET GLY LYS LEU SER GLU GLN LEU LYS HIS CYS ASN SEQRES 2 A 114 GLY ILE LEU LYS GLU LEU LEU SER LYS LYS HIS ALA ALA SEQRES 3 A 114 TYR ALA TRP PRO PHE TYR LYS PRO VAL ASP ALA SER ALA SEQRES 4 A 114 LEU GLY LEU HIS ASP TYR HIS ASP ILE ILE LYS HIS PRO SEQRES 5 A 114 MET ASP LEU SER THR VAL LYS ARG LYS MET GLU ASN ARG SEQRES 6 A 114 ASP TYR ARG ASP ALA GLN GLU PHE ALA ALA ASP VAL ARG SEQRES 7 A 114 LEU MET PHE SER ASN CYS TYR LYS TYR ASN PRO PRO ASP SEQRES 8 A 114 HIS ASP VAL VAL ALA MET ALA ARG LYS LEU GLN ASP VAL SEQRES 9 A 114 PHE GLU PHE ARG TYR ALA LYS MET PRO ASP SEQRES 1 B 114 SER MET GLY LYS LEU SER GLU GLN LEU LYS HIS CYS ASN SEQRES 2 B 114 GLY ILE LEU LYS GLU LEU LEU SER LYS LYS HIS ALA ALA SEQRES 3 B 114 TYR ALA TRP PRO PHE TYR LYS PRO VAL ASP ALA SER ALA SEQRES 4 B 114 LEU GLY LEU HIS ASP TYR HIS ASP ILE ILE LYS HIS PRO SEQRES 5 B 114 MET ASP LEU SER THR VAL LYS ARG LYS MET GLU ASN ARG SEQRES 6 B 114 ASP TYR ARG ASP ALA GLN GLU PHE ALA ALA ASP VAL ARG SEQRES 7 B 114 LEU MET PHE SER ASN CYS TYR LYS TYR ASN PRO PRO ASP SEQRES 8 B 114 HIS ASP VAL VAL ALA MET ALA ARG LYS LEU GLN ASP VAL SEQRES 9 B 114 PHE GLU PHE ARG TYR ALA LYS MET PRO ASP SEQRES 1 C 114 SER MET GLY LYS LEU SER GLU GLN LEU LYS HIS CYS ASN SEQRES 2 C 114 GLY ILE LEU LYS GLU LEU LEU SER LYS LYS HIS ALA ALA SEQRES 3 C 114 TYR ALA TRP PRO PHE TYR LYS PRO VAL ASP ALA SER ALA SEQRES 4 C 114 LEU GLY LEU HIS ASP TYR HIS ASP ILE ILE LYS HIS PRO SEQRES 5 C 114 MET ASP LEU SER THR VAL LYS ARG LYS MET GLU ASN ARG SEQRES 6 C 114 ASP TYR ARG ASP ALA GLN GLU PHE ALA ALA ASP VAL ARG SEQRES 7 C 114 LEU MET PHE SER ASN CYS TYR LYS TYR ASN PRO PRO ASP SEQRES 8 C 114 HIS ASP VAL VAL ALA MET ALA ARG LYS LEU GLN ASP VAL SEQRES 9 C 114 PHE GLU PHE ARG TYR ALA LYS MET PRO ASP SEQRES 1 D 114 SER MET GLY LYS LEU SER GLU GLN LEU LYS HIS CYS ASN SEQRES 2 D 114 GLY ILE LEU LYS GLU LEU LEU SER LYS LYS HIS ALA ALA SEQRES 3 D 114 TYR ALA TRP PRO PHE TYR LYS PRO VAL ASP ALA SER ALA SEQRES 4 D 114 LEU GLY LEU HIS ASP TYR HIS ASP ILE ILE LYS HIS PRO SEQRES 5 D 114 MET ASP LEU SER THR VAL LYS ARG LYS MET GLU ASN ARG SEQRES 6 D 114 ASP TYR ARG ASP ALA GLN GLU PHE ALA ALA ASP VAL ARG SEQRES 7 D 114 LEU MET PHE SER ASN CYS TYR LYS TYR ASN PRO PRO ASP SEQRES 8 D 114 HIS ASP VAL VAL ALA MET ALA ARG LYS LEU GLN ASP VAL SEQRES 9 D 114 PHE GLU PHE ARG TYR ALA LYS MET PRO ASP HET SO4 A 501 5 HET EDO A 502 4 HET EDO A 503 4 HET 8J2 A 504 31 HET SO4 B 501 5 HET SO4 B 502 5 HET SO4 B 503 5 HET 8J2 B 504 31 HET SO4 C 501 5 HET EDO C 502 4 HET 8J2 C 503 31 HET 8J2 C 504 31 HET SO4 D 501 5 HET EDO D 502 4 HETNAM SO4 SULFATE ION HETNAM EDO 1,2-ETHANEDIOL HETNAM 8J2 PROPAN-2-YL ~{N}-[(2~{S},4~{R})-6-(3-ACETAMIDOPHENYL)- HETNAM 2 8J2 1-ETHANOYL-2-METHYL-3,4-DIHYDRO-2~{H}-QUINOLIN-4- HETNAM 3 8J2 YL]CARBAMATE HETSYN EDO ETHYLENE GLYCOL FORMUL 5 SO4 6(O4 S 2-) FORMUL 6 EDO 4(C2 H6 O2) FORMUL 8 8J2 4(C24 H29 N3 O4) FORMUL 19 HOH *309(H2 O) HELIX 1 AA1 LEU A 346 LEU A 361 1 16 HELIX 2 AA2 SER A 362 LYS A 364 5 3 HELIX 3 AA3 HIS A 365 TRP A 370 1 6 HELIX 4 AA4 PRO A 371 TYR A 373 5 3 HELIX 5 AA5 ASP A 377 GLY A 382 1 6 HELIX 6 AA6 ASP A 385 ILE A 390 1 6 HELIX 7 AA7 ASP A 395 ASN A 405 1 11 HELIX 8 AA8 ASP A 410 ASN A 429 1 20 HELIX 9 AA9 HIS A 433 LYS A 452 1 20 HELIX 10 AB1 SER B 347 LEU B 361 1 15 HELIX 11 AB2 SER B 362 LYS B 364 5 3 HELIX 12 AB3 HIS B 365 TRP B 370 1 6 HELIX 13 AB4 PRO B 371 TYR B 373 5 3 HELIX 14 AB5 ASP B 377 GLY B 382 1 6 HELIX 15 AB6 ASP B 385 ILE B 390 1 6 HELIX 16 AB7 ASP B 395 ASN B 405 1 11 HELIX 17 AB8 ASP B 410 ASN B 429 1 20 HELIX 18 AB9 HIS B 433 LYS B 452 1 20 HELIX 19 AC1 GLN C 349 LEU C 361 1 13 HELIX 20 AC2 SER C 362 LYS C 364 5 3 HELIX 21 AC3 HIS C 365 TRP C 370 1 6 HELIX 22 AC4 PRO C 371 TYR C 373 5 3 HELIX 23 AC5 ASP C 385 ILE C 390 1 6 HELIX 24 AC6 ASP C 395 ASN C 405 1 11 HELIX 25 AC7 ASP C 410 ASN C 429 1 20 HELIX 26 AC8 HIS C 433 MET C 453 1 21 HELIX 27 AC9 GLU D 348 LEU D 361 1 14 HELIX 28 AD1 SER D 362 LYS D 364 5 3 HELIX 29 AD2 HIS D 365 TRP D 370 1 6 HELIX 30 AD3 PRO D 371 TYR D 373 5 3 HELIX 31 AD4 ASP D 377 GLY D 382 1 6 HELIX 32 AD5 ASP D 385 ILE D 390 1 6 HELIX 33 AD6 ASP D 395 ASN D 405 1 11 HELIX 34 AD7 ASP D 410 ASN D 429 1 20 HELIX 35 AD8 HIS D 433 LYS D 452 1 20 SITE 1 AC1 4 HIS A 365 VAL A 445 ARG A 449 ARG C 440 SITE 1 AC2 4 SER A 362 LYS A 363 LYS A 364 HOH A 648 SITE 1 AC3 3 SER A 379 MET C 394 LYS C 402 SITE 1 AC4 16 TRP A 370 PRO A 371 PHE A 372 LEU A 383 SITE 2 AC4 16 CYS A 425 ASN A 429 HIS A 433 VAL A 435 SITE 3 AC4 16 HOH A 604 HOH A 607 HOH A 615 HOH A 637 SITE 4 AC4 16 HOH A 659 LYS B 363 TRP B 370 TYR B 373 SITE 1 AC5 5 LYS B 364 HIS B 365 ARG B 440 ARG B 449 SITE 2 AC5 5 HOH B 628 SITE 1 AC6 5 VAL B 376 ASP B 377 ALA B 378 SER B 379 SITE 2 AC6 5 HIS B 387 SITE 1 AC7 4 SER B 362 LYS B 363 HIS B 384 HOH B 620 SITE 1 AC8 15 LYS A 363 TYR A 373 HOH A 630 TRP B 370 SITE 2 AC8 15 PRO B 371 PHE B 372 LEU B 381 LEU B 383 SITE 3 AC8 15 CYS B 425 ASN B 429 HIS B 433 MET B 438 SITE 4 AC8 15 HOH B 615 HOH B 639 HOH B 640 SITE 1 AC9 4 ARG A 440 LYS C 364 HIS C 365 ARG C 449 SITE 1 AD1 4 VAL C 376 ALA C 378 SER C 379 HIS C 387 SITE 1 AD2 14 TRP C 370 PRO C 371 PHE C 372 LEU C 383 SITE 2 AD2 14 CYS C 425 ASN C 429 HIS C 433 ASP C 434 SITE 3 AD2 14 MET C 438 HOH C 605 HOH C 634 HOH C 665 SITE 4 AD2 14 LYS D 363 TYR D 373 SITE 1 AD3 13 TYR C 373 HOH C 639 HOH C 647 HOH C 648 SITE 2 AD3 13 TRP D 370 PRO D 371 PHE D 372 LEU D 383 SITE 3 AD3 13 CYS D 425 ASN D 429 HIS D 433 MET D 438 SITE 4 AD3 13 HOH D 617 SITE 1 AD4 5 LYS D 364 HIS D 365 ARG D 440 VAL D 445 SITE 2 AD4 5 ARG D 449 SITE 1 AD5 3 ALA D 437 LYS D 441 HOH D 601 CRYST1 147.244 94.409 38.585 90.00 95.43 90.00 C 1 2 1 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.006791 0.000000 0.000646 0.00000 SCALE2 0.000000 0.010592 0.000000 0.00000 SCALE3 0.000000 0.000000 0.026034 0.00000