HEADER DNA BINDING PROTEIN 08-FEB-17 5N2Q TITLE MOBM RELAXASE DOMAIN (MOBV; MOB_PRE) BOUND TO 26NT PMV158 ORIT DNA COMPND MOL_ID: 1; COMPND 2 MOLECULE: PLASMID RECOMBINATION ENZYME; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: MOBILIZATION PROTEIN; COMPND 5 ENGINEERED: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: DNA (26-MER); COMPND 8 CHAIN: B; COMPND 9 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: STREPTOCOCCUS AGALACTIAE; SOURCE 3 ORGANISM_TAXID: 1311; SOURCE 4 GENE: PRE, MOB; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 MOL_ID: 2; SOURCE 8 ORGANISM_SCIENTIFIC: PLASMID PMV158; SOURCE 9 ORGANISM_TAXID: 2606; SOURCE 10 EXPRESSION_SYSTEM: SYNTHETIC CONSTRUCT; SOURCE 11 EXPRESSION_SYSTEM_TAXID: 32630 KEYWDS RELAXASE, NUCLEASE, CONJUGATION, DNA BINDING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR S.RUSSI,D.R.BOER,M.COLL REVDAT 4 23-OCT-24 5N2Q 1 LINK REVDAT 3 16-OCT-19 5N2Q 1 REMARK REVDAT 2 27-SEP-17 5N2Q 1 JRNL REVDAT 1 12-APR-17 5N2Q 0 JRNL AUTH R.PLUTA,D.R.BOER,F.LORENZO-DIAZ,S.RUSSI,H.GOMEZ, JRNL AUTH 2 C.FERNANDEZ-LOPEZ,R.PEREZ-LUQUE,M.OROZCO,M.ESPINOSA,M.COLL JRNL TITL STRUCTURAL BASIS OF A HISTIDINE-DNA NICKING/JOINING JRNL TITL 2 MECHANISM FOR GENE TRANSFER AND PROMISCUOUS SPREAD OF JRNL TITL 3 ANTIBIOTIC RESISTANCE. JRNL REF PROC. NATL. ACAD. SCI. V. 114 E6526 2017 JRNL REF 2 U.S.A. JRNL REFN ESSN 1091-6490 JRNL PMID 28739894 JRNL DOI 10.1073/PNAS.1702971114 REMARK 2 REMARK 2 RESOLUTION. 2.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0102 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 55.73 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 98.6 REMARK 3 NUMBER OF REFLECTIONS : 16179 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.170 REMARK 3 R VALUE (WORKING SET) : 0.166 REMARK 3 FREE R VALUE : 0.238 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 862 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.00 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.05 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1025 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 85.98 REMARK 3 BIN R VALUE (WORKING SET) : 0.2740 REMARK 3 BIN FREE R VALUE SET COUNT : 48 REMARK 3 BIN FREE R VALUE : 0.3310 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1429 REMARK 3 NUCLEIC ACID ATOMS : 537 REMARK 3 HETEROGEN ATOMS : 9 REMARK 3 SOLVENT ATOMS : 155 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 31.72 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 2.77000 REMARK 3 B22 (A**2) : -0.76000 REMARK 3 B33 (A**2) : -2.35000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -1.65000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.193 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.183 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.125 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 4.546 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.964 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.922 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2235 ; 0.022 ; 0.021 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3147 ; 2.135 ; 2.256 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 209 ; 6.793 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 94 ;37.513 ;24.787 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 312 ;17.388 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 10 ;16.969 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 332 ; 0.130 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1556 ; 0.010 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 961 ; 1.169 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1556 ; 2.096 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1274 ; 2.964 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1577 ; 4.267 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 5N2Q COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 09-FEB-17. REMARK 100 THE DEPOSITION ID IS D_1200003440. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 01-MAY-08 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 4.6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID23-2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.8726 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 225 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : IMOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 16179 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.000 REMARK 200 RESOLUTION RANGE LOW (A) : 55.730 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.6 REMARK 200 DATA REDUNDANCY : 4.100 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 10.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 37.17 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.96 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 100 MM NAAC, PH 4.6 AND 10% PEG 6000, REMARK 280 BATCH MODE, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 26.42650 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3920 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 13310 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -35.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ARG A 25 REMARK 465 VAL A 26 REMARK 465 PHE A 27 REMARK 465 GLU A 28 REMARK 465 THR A 29 REMARK 465 HIS A 30 REMARK 465 SER A 31 REMARK 465 ASN A 32 REMARK 465 LYS A 33 REMARK 465 ASP A 34 REMARK 465 ILE A 35 REMARK 465 ASN A 36 REMARK 465 PRO A 37 REMARK 465 SER A 38 REMARK 465 ARG A 39 REMARK 465 SER A 40 REMARK 465 HIS A 41 REMARK 465 LEU A 42 REMARK 465 ARG A 194 REMARK 465 ALA A 195 REMARK 465 MSE A 196 REMARK 465 ALA A 197 REMARK 465 ASP A 198 REMARK 465 MSE A 199 REMARK 465 DT B 27 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 DC B 2 C4 DC B 2 C5 0.051 REMARK 500 DT B 3 C6 DT B 3 N1 0.054 REMARK 500 DT B 3 C5 DT B 3 C7 0.037 REMARK 500 DT B 4 O3' DT B 4 C3' -0.078 REMARK 500 DT B 4 C5 DT B 4 C7 0.037 REMARK 500 DT B 5 C5 DT B 5 C7 0.041 REMARK 500 DA B 12 C5 DA B 12 N7 0.038 REMARK 500 DG B 17 N7 DG B 17 C8 0.048 REMARK 500 DA B 21 N9 DA B 21 C4 0.054 REMARK 500 DA B 21 C6 DA B 21 N6 0.048 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 101 NE - CZ - NH1 ANGL. DEV. = -3.2 DEGREES REMARK 500 DA B 1 C6 - N1 - C2 ANGL. DEV. = 3.6 DEGREES REMARK 500 DA B 1 N1 - C2 - N3 ANGL. DEV. = -4.7 DEGREES REMARK 500 DC B 2 C1' - O4' - C4' ANGL. DEV. = -6.4 DEGREES REMARK 500 DC B 2 O4' - C1' - N1 ANGL. DEV. = 4.2 DEGREES REMARK 500 DC B 2 N1 - C2 - O2 ANGL. DEV. = 4.8 DEGREES REMARK 500 DC B 2 N3 - C4 - N4 ANGL. DEV. = -4.9 DEGREES REMARK 500 DC B 2 C5 - C4 - N4 ANGL. DEV. = 5.2 DEGREES REMARK 500 DT B 3 OP1 - P - OP2 ANGL. DEV. = 11.4 DEGREES REMARK 500 DT B 4 C4 - C5 - C7 ANGL. DEV. = 3.6 DEGREES REMARK 500 DT B 5 C4' - C3' - C2' ANGL. DEV. = 5.6 DEGREES REMARK 500 DT B 5 C4 - C5 - C7 ANGL. DEV. = 4.9 DEGREES REMARK 500 DA B 6 N1 - C2 - N3 ANGL. DEV. = -3.3 DEGREES REMARK 500 DA B 6 N1 - C6 - N6 ANGL. DEV. = 4.0 DEGREES REMARK 500 DT B 7 O4' - C1' - N1 ANGL. DEV. = 3.0 DEGREES REMARK 500 DG B 8 O4' - C1' - N9 ANGL. DEV. = -5.8 DEGREES REMARK 500 DA B 9 O5' - P - OP1 ANGL. DEV. = -9.3 DEGREES REMARK 500 DA B 9 O5' - P - OP2 ANGL. DEV. = 9.8 DEGREES REMARK 500 DA B 9 N1 - C2 - N3 ANGL. DEV. = -3.4 DEGREES REMARK 500 DA B 10 O4' - C1' - N9 ANGL. DEV. = 4.0 DEGREES REMARK 500 DA B 10 C5 - N7 - C8 ANGL. DEV. = -3.2 DEGREES REMARK 500 DA B 11 C3' - C2' - C1' ANGL. DEV. = -4.9 DEGREES REMARK 500 DA B 11 O4' - C1' - N9 ANGL. DEV. = 2.8 DEGREES REMARK 500 DA B 15 OP1 - P - OP2 ANGL. DEV. = 9.7 DEGREES REMARK 500 DA B 15 O5' - P - OP1 ANGL. DEV. = -6.0 DEGREES REMARK 500 DA B 15 O4' - C1' - N9 ANGL. DEV. = -4.8 DEGREES REMARK 500 DA B 16 O4' - C1' - N9 ANGL. DEV. = 7.0 DEGREES REMARK 500 DG B 17 O4' - C1' - N9 ANGL. DEV. = -5.0 DEGREES REMARK 500 DT B 18 O4' - C1' - N1 ANGL. DEV. = 2.3 DEGREES REMARK 500 DT B 18 N3 - C4 - O4 ANGL. DEV. = 4.3 DEGREES REMARK 500 DT B 20 O4' - C1' - C2' ANGL. DEV. = -5.9 DEGREES REMARK 500 DA B 21 N1 - C6 - N6 ANGL. DEV. = 3.9 DEGREES REMARK 500 DG B 22 O4' - C1' - N9 ANGL. DEV. = 4.5 DEGREES REMARK 500 DG B 22 C5 - C6 - N1 ANGL. DEV. = 4.1 DEGREES REMARK 500 DG B 22 C5 - C6 - O6 ANGL. DEV. = -3.8 DEGREES REMARK 500 DG B 24 O4' - C1' - N9 ANGL. DEV. = -5.0 DEGREES REMARK 500 DG B 24 N3 - C4 - C5 ANGL. DEV. = -3.2 DEGREES REMARK 500 DG B 26 O4' - C1' - N9 ANGL. DEV. = -4.3 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 23 35.86 -86.07 REMARK 500 ASN A 23 34.17 -97.52 REMARK 500 THR A 86 -162.96 -167.58 REMARK 500 SER A 87 -157.89 -162.73 REMARK 500 SER A 87 -159.24 -162.73 REMARK 500 ALA A 123 82.44 -150.02 REMARK 500 LEU A 127 59.72 -140.87 REMARK 500 ASP A 128 -121.44 -141.39 REMARK 500 ASP A 128 -51.38 -131.69 REMARK 500 GLU A 129 -21.27 -159.64 REMARK 500 SER A 182 134.25 -37.96 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 202 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 PHE A 92 O REMARK 620 2 LEU A 95 O 83.3 REMARK 620 3 HOH A 326 O 83.1 107.1 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA B 102 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 DC B 2 OP2 REMARK 620 2 HOH B 210 O 116.3 REMARK 620 3 HOH B 255 O 109.6 113.7 REMARK 620 N 1 2 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL A 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG A 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL B 101 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NA B 102 DBREF 5N2Q A 2 198 UNP P13925 PRE_STRAG 2 198 DBREF 5N2Q B 1 27 PDB 5N2Q 5N2Q 1 27 SEQADV 5N2Q MSE A 199 UNP P13925 EXPRESSION TAG SEQRES 1 A 198 SER TYR MSE VAL ALA ARG MSE GLN LYS MSE LYS ALA GLY SEQRES 2 A 198 ASN LEU GLY GLY ALA PHE LYS HIS ASN GLU ARG VAL PHE SEQRES 3 A 198 GLU THR HIS SER ASN LYS ASP ILE ASN PRO SER ARG SER SEQRES 4 A 198 HIS LEU ASN TYR GLU LEU THR ASP ARG ASP ARG SER VAL SEQRES 5 A 198 SER TYR GLU LYS GLN ILE LYS ASP TYR VAL ASN GLU ASN SEQRES 6 A 198 LYS VAL SER ASN ARG ALA ILE ARG LYS ASP ALA VAL LEU SEQRES 7 A 198 CYS ASP GLU TRP ILE ILE THR SER ASP LYS ASP PHE PHE SEQRES 8 A 198 GLU LYS LEU ASP GLU GLU GLN THR ARG THR PHE PHE GLU SEQRES 9 A 198 THR ALA LYS ASN TYR PHE ALA GLU ASN TYR GLY GLU SER SEQRES 10 A 198 ASN ILE ALA TYR ALA SER VAL HIS LEU ASP GLU SER THR SEQRES 11 A 198 PRO HIS MSE HIS MSE GLY VAL VAL PRO PHE GLU ASN GLY SEQRES 12 A 198 LYS LEU SER SER LYS ALA MSE PHE ASP ARG GLU GLU LEU SEQRES 13 A 198 LYS HIS ILE GLN GLU ASP LEU PRO ARG TYR MSE SER ASP SEQRES 14 A 198 HIS GLY PHE GLU LEU GLU ARG GLY LYS LEU ASN SER GLU SEQRES 15 A 198 ALA LYS HIS LYS THR VAL ALA GLU PHE LYS ARG ALA MSE SEQRES 16 A 198 ALA ASP MSE SEQRES 1 B 27 DA DC DT DT DT DA DT DG DA DA DA DA DT SEQRES 2 B 27 DA DA DA DG DT DA DT DA DG DT DG DT DG SEQRES 3 B 27 DT MODRES 5N2Q MSE A 4 MET MODIFIED RESIDUE MODRES 5N2Q MSE A 8 MET MODIFIED RESIDUE MODRES 5N2Q MSE A 11 MET MODIFIED RESIDUE MODRES 5N2Q MSE A 134 MET MODIFIED RESIDUE MODRES 5N2Q MSE A 136 MET MODIFIED RESIDUE MODRES 5N2Q MSE A 151 MET MODIFIED RESIDUE MODRES 5N2Q MSE A 168 MET MODIFIED RESIDUE HET MSE A 4 16 HET MSE A 8 8 HET MSE A 11 8 HET MSE A 134 8 HET MSE A 136 8 HET MSE A 151 8 HET MSE A 168 8 HET CL A 201 1 HET MG A 202 1 HET GOL B 101 6 HET NA B 102 1 HETNAM MSE SELENOMETHIONINE HETNAM CL CHLORIDE ION HETNAM MG MAGNESIUM ION HETNAM GOL GLYCEROL HETNAM NA SODIUM ION HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 1 MSE 7(C5 H11 N O2 SE) FORMUL 3 CL CL 1- FORMUL 4 MG MG 2+ FORMUL 5 GOL C3 H8 O3 FORMUL 6 NA NA 1+ FORMUL 7 HOH *155(H2 O) HELIX 1 AA1 ASN A 15 ASN A 23 1 9 HELIX 2 AA2 SER A 54 LYS A 67 1 14 HELIX 3 AA3 ASP A 88 LYS A 94 1 7 HELIX 4 AA4 ASP A 96 GLY A 116 1 21 HELIX 5 AA5 SER A 147 PHE A 152 1 6 HELIX 6 AA6 ASP A 153 HIS A 171 1 19 HELIX 7 AA7 THR A 188 LYS A 193 1 6 SHEET 1 AA1 5 VAL A 5 MSE A 11 0 SHEET 2 AA1 5 CYS A 80 THR A 86 -1 O ILE A 84 N ARG A 7 SHEET 3 AA1 5 HIS A 133 VAL A 138 -1 O VAL A 138 N ASP A 81 SHEET 4 AA1 5 ILE A 120 HIS A 126 -1 N SER A 124 O HIS A 135 SHEET 5 AA1 5 TYR A 44 GLU A 45 -1 N TYR A 44 O VAL A 125 SHEET 1 AA2 2 PHE A 141 GLU A 142 0 SHEET 2 AA2 2 LYS A 145 LEU A 146 -1 O LYS A 145 N GLU A 142 LINK C ATYR A 3 N AMSE A 4 1555 1555 1.33 LINK C BTYR A 3 N BMSE A 4 1555 1555 1.32 LINK C AMSE A 4 N AVAL A 5 1555 1555 1.34 LINK C BMSE A 4 N BVAL A 5 1555 1555 1.33 LINK C ARG A 7 N MSE A 8 1555 1555 1.33 LINK C MSE A 8 N GLN A 9 1555 1555 1.33 LINK C LYS A 10 N MSE A 11 1555 1555 1.32 LINK C MSE A 11 N LYS A 12 1555 1555 1.33 LINK C HIS A 133 N MSE A 134 1555 1555 1.33 LINK C MSE A 134 N HIS A 135 1555 1555 1.32 LINK C HIS A 135 N MSE A 136 1555 1555 1.33 LINK C MSE A 136 N GLY A 137 1555 1555 1.31 LINK C ALA A 150 N MSE A 151 1555 1555 1.34 LINK C MSE A 151 N PHE A 152 1555 1555 1.34 LINK C TYR A 167 N MSE A 168 1555 1555 1.32 LINK C MSE A 168 N SER A 169 1555 1555 1.33 LINK O PHE A 92 MG MG A 202 1555 1555 2.39 LINK O LEU A 95 MG MG A 202 1555 1555 2.34 LINK MG MG A 202 O HOH A 326 1555 1555 2.13 LINK OP2 DC B 2 NA NA B 102 1555 1555 2.15 LINK NA NA B 102 O HOH B 210 1555 1555 3.10 LINK NA NA B 102 O HOH B 255 1555 1555 2.74 SITE 1 AC1 2 ALA A 13 GLY A 14 SITE 1 AC2 3 PHE A 92 LEU A 95 HOH A 326 SITE 1 AC3 2 PHE A 192 DG B 24 SITE 1 AC4 5 GLU A 97 GLU A 98 DA B 1 DC B 2 SITE 2 AC4 5 HOH B 255 CRYST1 43.576 52.853 56.035 90.00 95.88 90.00 P 1 21 1 2 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.022949 0.000000 0.002363 0.00000 SCALE2 0.000000 0.018920 0.000000 0.00000 SCALE3 0.000000 0.000000 0.017940 0.00000