HEADER CELL ADHESION 08-FEB-17 5N30 TITLE CRYSTAL STRUCTURE OF THE V72I MUTANT OF THE MOUSE ALPHA-DYSTROGLYCAN TITLE 2 N-TERMINAL REGION COMPND MOL_ID: 1; COMPND 2 MOLECULE: DYSTROGLYCAN; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: DYSTROPHIN-ASSOCIATED GLYCOPROTEIN 1; COMPND 5 ENGINEERED: YES; COMPND 6 MUTATION: YES; COMPND 7 OTHER_DETAILS: V72I MUTANT SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 3 ORGANISM_COMMON: HOUSE MOUSE; SOURCE 4 ORGANISM_TAXID: 10090; SOURCE 5 TISSUE: SKELETAL MUSCLE; SOURCE 6 GENE: DAG1, DAG-1; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_TAXID: 469008 KEYWDS DYSTROGLYCAN CELL ADHESION LAMININ BINDING, CELL ADHESION EXPDTA X-RAY DIFFRACTION AUTHOR A.CASSETTA,S.COVACEUSZACH,A.BRANCACCIO,F.SCIANDRA,M.BOZZI, AUTHOR 2 M.G.BIGOTTI,P.V.KONAREV REVDAT 2 17-JAN-24 5N30 1 REMARK REVDAT 1 01-NOV-17 5N30 0 JRNL AUTH S.COVACEUSZACH,M.BOZZI,M.G.BIGOTTI,F.SCIANDRA,P.V.KONAREV, JRNL AUTH 2 A.BRANCACCIO,A.CASSETTA JRNL TITL THE EFFECT OF THE PATHOLOGICAL V72I, D109N AND T190M JRNL TITL 2 MISSENSE MUTATIONS ON THE MOLECULAR STRUCTURE OF JRNL TITL 3 ALPHA-DYSTROGLYCAN. JRNL REF PLOS ONE V. 12 86110 2017 JRNL REFN ESSN 1932-6203 JRNL PMID 29036200 JRNL DOI 10.1371/JOURNAL.PONE.0186110 REMARK 2 REMARK 2 RESOLUTION. 1.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.11_2561: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 35.91 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.920 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 25621 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.156 REMARK 3 R VALUE (WORKING SET) : 0.154 REMARK 3 FREE R VALUE : 0.182 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1282 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 35.9121 - 3.7431 1.00 2700 143 0.1435 0.1670 REMARK 3 2 3.7431 - 2.9714 1.00 2713 142 0.1457 0.1827 REMARK 3 3 2.9714 - 2.5959 1.00 2720 143 0.1541 0.1791 REMARK 3 4 2.5959 - 2.3586 1.00 2710 143 0.1447 0.1667 REMARK 3 5 2.3586 - 2.1896 1.00 2701 142 0.1396 0.1535 REMARK 3 6 2.1896 - 2.0605 1.00 2708 143 0.1564 0.2264 REMARK 3 7 2.0605 - 1.9573 1.00 2723 143 0.1719 0.1990 REMARK 3 8 1.9573 - 1.8721 1.00 2667 141 0.2095 0.2247 REMARK 3 9 1.8721 - 1.8001 0.99 2697 142 0.2863 0.3058 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.200 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 19.570 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.016 1794 REMARK 3 ANGLE : 1.338 2438 REMARK 3 CHIRALITY : 0.086 281 REMARK 3 PLANARITY : 0.011 315 REMARK 3 DIHEDRAL : 19.316 1085 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 3 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 59 THROUGH 113 ) REMARK 3 ORIGIN FOR THE GROUP (A): 70.2639 16.0435 12.1488 REMARK 3 T TENSOR REMARK 3 T11: 0.3899 T22: 0.3649 REMARK 3 T33: 0.3369 T12: -0.0478 REMARK 3 T13: -0.0418 T23: 0.0295 REMARK 3 L TENSOR REMARK 3 L11: 0.7596 L22: 1.1333 REMARK 3 L33: 1.2850 L12: -0.2942 REMARK 3 L13: 0.1560 L23: -0.7670 REMARK 3 S TENSOR REMARK 3 S11: -0.0931 S12: -0.0965 S13: -0.0788 REMARK 3 S21: -0.2539 S22: 0.0445 S23: 0.2687 REMARK 3 S31: -0.1018 S32: -0.4079 S33: -0.0001 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 114 THROUGH 155 ) REMARK 3 ORIGIN FOR THE GROUP (A): 74.7875 14.5889 9.6019 REMARK 3 T TENSOR REMARK 3 T11: 0.3627 T22: 0.3014 REMARK 3 T33: 0.2715 T12: -0.0552 REMARK 3 T13: -0.0225 T23: 0.0306 REMARK 3 L TENSOR REMARK 3 L11: 1.0554 L22: 0.9380 REMARK 3 L33: 1.0303 L12: 0.2387 REMARK 3 L13: -0.9497 L23: 0.2552 REMARK 3 S TENSOR REMARK 3 S11: -0.2230 S12: 0.0716 S13: -0.1106 REMARK 3 S21: -0.2197 S22: 0.0403 S23: 0.1358 REMARK 3 S31: -0.3410 S32: -0.0637 S33: 0.0001 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 156 THROUGH 303 ) REMARK 3 ORIGIN FOR THE GROUP (A): 81.4732 16.2814 39.8062 REMARK 3 T TENSOR REMARK 3 T11: 0.2140 T22: 0.1998 REMARK 3 T33: 0.2189 T12: -0.0314 REMARK 3 T13: -0.0196 T23: 0.0013 REMARK 3 L TENSOR REMARK 3 L11: 1.3412 L22: 2.1105 REMARK 3 L33: 2.4513 L12: 0.1321 REMARK 3 L13: 0.3270 L23: 0.3186 REMARK 3 S TENSOR REMARK 3 S11: -0.0854 S12: 0.0209 S13: 0.1507 REMARK 3 S21: -0.0779 S22: 0.0022 S23: -0.0759 REMARK 3 S31: -0.3170 S32: 0.1322 S33: -0.0326 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5N30 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 08-FEB-17. REMARK 100 THE DEPOSITION ID IS D_1200003471. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 10-MAR-16 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.2 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ELETTRA REMARK 200 BEAMLINE : 5.2R REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9763 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL SI(1 1 1) REMARK 200 OPTICS : PT-COATED TOROIDAL MIRROR REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 2M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS VERSION OCT 15, 2015 REMARK 200 DATA SCALING SOFTWARE : XSCALE VERSION OCT 15, 2015 REMARK 200 BUILT=20151231 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 25641 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.800 REMARK 200 RESOLUTION RANGE LOW (A) : 36.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 11.50 REMARK 200 R MERGE (I) : 0.10500 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 15.8400 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.86 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.4 REMARK 200 DATA REDUNDANCY IN SHELL : 11.30 REMARK 200 R MERGE FOR SHELL (I) : 1.30600 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.130 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER 2.7.2 REMARK 200 STARTING MODEL: 1U2C REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 50.74 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.50 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: CROSS STREAK-SEEDING (FROM D109N ALPHA REMARK 280 -DG MUTANT) 1 MUL PROTEIN SOLUTION + 1 MUL PRECIPITANT SEEDING REMARK 280 AFTER 3-6 DAYS OF EQUILIBRATION PROTEIN SOLUTION: (5 MG / ML REMARK 280 PROTEIN, 25 MM TRIS, 150 MM NACL, PH 7.5) PRECIPITANT: 0.8 M REMARK 280 CITRATE BUFFER, PH 7.2, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: H 3 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 X+2/3,Y+1/3,Z+1/3 REMARK 290 5555 -Y+2/3,X-Y+1/3,Z+1/3 REMARK 290 6555 -X+Y+2/3,-X+1/3,Z+1/3 REMARK 290 7555 X+1/3,Y+2/3,Z+2/3 REMARK 290 8555 -Y+1/3,X-Y+2/3,Z+2/3 REMARK 290 9555 -X+Y+1/3,-X+2/3,Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 35.90500 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 20.72976 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 47.99667 REMARK 290 SMTRY1 5 -0.500000 -0.866025 0.000000 35.90500 REMARK 290 SMTRY2 5 0.866025 -0.500000 0.000000 20.72976 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 47.99667 REMARK 290 SMTRY1 6 -0.500000 0.866025 0.000000 35.90500 REMARK 290 SMTRY2 6 -0.866025 -0.500000 0.000000 20.72976 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 47.99667 REMARK 290 SMTRY1 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 41.45952 REMARK 290 SMTRY3 7 0.000000 0.000000 1.000000 95.99333 REMARK 290 SMTRY1 8 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 8 0.866025 -0.500000 0.000000 41.45952 REMARK 290 SMTRY3 8 0.000000 0.000000 1.000000 95.99333 REMARK 290 SMTRY1 9 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 -0.500000 0.000000 41.45952 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 95.99333 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 920 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 12050 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: 13.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 631 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A 50 REMARK 465 VAL A 51 REMARK 465 LEU A 52 REMARK 465 SER A 53 REMARK 465 ASP A 54 REMARK 465 PHE A 55 REMARK 465 GLN A 56 REMARK 465 GLU A 57 REMARK 465 ALA A 58 REMARK 465 GLN A 163 REMARK 465 SER A 164 REMARK 465 VAL A 165 REMARK 465 ARG A 166 REMARK 465 ALA A 167 REMARK 465 ALA A 168 REMARK 465 SER A 169 REMARK 465 SER A 170 REMARK 465 ASP A 171 REMARK 465 PRO A 172 REMARK 465 GLY A 173 REMARK 465 GLU A 174 REMARK 465 VAL A 175 REMARK 465 VAL A 176 REMARK 465 PRO A 177 REMARK 465 SER A 178 REMARK 465 LEU A 304 REMARK 465 PRO A 305 REMARK 465 LYS A 306 REMARK 465 ARG A 307 REMARK 465 LEU A 308 REMARK 465 ARG A 309 REMARK 465 ARG A 310 REMARK 465 GLN A 311 REMARK 465 ILE A 312 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 HE1 TRP A 258 HO2 EDO A 402 1.34 REMARK 500 O HOH A 579 O HOH A 592 2.04 REMARK 500 O HOH A 527 O HOH A 655 2.15 REMARK 500 O HOH A 502 O HOH A 569 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 183 -2.25 64.21 REMARK 500 LEU A 233 36.43 -97.41 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PEG A 404 DBREF 5N30 A 50 312 UNP Q62165 DAG1_MOUSE 50 312 SEQADV 5N30 ILE A 72 UNP Q62165 VAL 72 ENGINEERED MUTATION SEQRES 1 A 263 SER VAL LEU SER ASP PHE GLN GLU ALA VAL PRO THR VAL SEQRES 2 A 263 VAL GLY ILE PRO ASP GLY THR ALA VAL ILE GLY ARG SER SEQRES 3 A 263 PHE ARG VAL SER ILE PRO THR ASP LEU ILE ALA SER SER SEQRES 4 A 263 GLY GLU ILE ILE LYS VAL SER ALA ALA GLY LYS GLU ALA SEQRES 5 A 263 LEU PRO SER TRP LEU HIS TRP ASP PRO HIS SER HIS ILE SEQRES 6 A 263 LEU GLU GLY LEU PRO LEU ASP THR ASP LYS GLY VAL HIS SEQRES 7 A 263 TYR ILE SER VAL SER ALA ALA ARG LEU GLY ALA ASN GLY SEQRES 8 A 263 SER HIS VAL PRO GLN THR SER SER VAL PHE SER ILE GLU SEQRES 9 A 263 VAL TYR PRO GLU ASP HIS ASN GLU PRO GLN SER VAL ARG SEQRES 10 A 263 ALA ALA SER SER ASP PRO GLY GLU VAL VAL PRO SER ALA SEQRES 11 A 263 CYS ALA ALA ASP GLU PRO VAL THR VAL LEU THR VAL ILE SEQRES 12 A 263 LEU ASP ALA ASP LEU THR LYS MET THR PRO LYS GLN ARG SEQRES 13 A 263 ILE ASP LEU LEU ASN ARG MET GLN SER PHE SER GLU VAL SEQRES 14 A 263 GLU LEU HIS ASN MET LYS LEU VAL PRO VAL VAL ASN ASN SEQRES 15 A 263 ARG LEU PHE ASP MET SER ALA PHE MET ALA GLY PRO GLY SEQRES 16 A 263 ASN ALA LYS LYS VAL VAL GLU ASN GLY ALA LEU LEU SER SEQRES 17 A 263 TRP LYS LEU GLY CYS SER LEU ASN GLN ASN SER VAL PRO SEQRES 18 A 263 ASP ILE ARG GLY VAL GLU THR PRO ALA ARG GLU GLY ALA SEQRES 19 A 263 MET SER ALA GLN LEU GLY TYR PRO VAL VAL GLY TRP HIS SEQRES 20 A 263 ILE ALA ASN LYS LYS PRO THR LEU PRO LYS ARG LEU ARG SEQRES 21 A 263 ARG GLN ILE HET EDO A 401 10 HET EDO A 402 10 HET EDO A 403 10 HET PEG A 404 17 HETNAM EDO 1,2-ETHANEDIOL HETNAM PEG DI(HYDROXYETHYL)ETHER HETSYN EDO ETHYLENE GLYCOL FORMUL 2 EDO 3(C2 H6 O2) FORMUL 5 PEG C4 H10 O3 FORMUL 6 HOH *172(H2 O) HELIX 1 AA1 PRO A 81 ALA A 86 1 6 HELIX 2 AA2 LEU A 120 LYS A 124 5 5 HELIX 3 AA3 ASP A 196 MET A 200 5 5 HELIX 4 AA4 THR A 201 GLU A 217 1 17 HELIX 5 AA5 GLU A 219 MET A 223 5 5 HELIX 6 AA6 ILE A 272 GLY A 282 1 11 HELIX 7 AA7 GLY A 282 GLY A 289 1 8 SHEET 1 AA1 4 GLY A 68 VAL A 71 0 SHEET 2 AA1 4 HIS A 142 TYR A 155 1 O TYR A 155 N ALA A 70 SHEET 3 AA1 4 GLY A 125 LEU A 136 -1 N ARG A 135 O VAL A 143 SHEET 4 AA1 4 ILE A 91 ALA A 96 -1 N ILE A 91 O ALA A 134 SHEET 1 AA2 3 PHE A 76 SER A 79 0 SHEET 2 AA2 3 ILE A 114 GLY A 117 -1 O LEU A 115 N VAL A 78 SHEET 3 AA2 3 LEU A 106 ASP A 109 -1 N ASP A 109 O ILE A 114 SHEET 1 AA3 5 LYS A 224 PRO A 227 0 SHEET 2 AA3 5 ALA A 254 CYS A 262 -1 O LEU A 255 N VAL A 226 SHEET 3 AA3 5 VAL A 186 LEU A 193 -1 N THR A 187 O LEU A 260 SHEET 4 AA3 5 VAL A 292 LYS A 300 -1 O GLY A 294 N ILE A 192 SHEET 5 AA3 5 MET A 240 PRO A 243 -1 N MET A 240 O ILE A 297 SSBOND 1 CYS A 180 CYS A 262 1555 1555 2.09 SITE 1 AC1 6 PHE A 215 ASN A 245 ALA A 283 HOH A 534 SITE 2 AC1 6 HOH A 538 HOH A 612 SITE 1 AC2 5 SER A 216 GLU A 217 TRP A 258 ASP A 271 SITE 2 AC2 5 EDO A 403 SITE 1 AC3 4 SER A 216 VAL A 218 LYS A 259 EDO A 402 SITE 1 AC4 9 ASP A 158 ASN A 160 PRO A 162 ASN A 222 SITE 2 AC4 9 LYS A 224 SER A 257 TRP A 258 LYS A 259 SITE 3 AC4 9 HOH A 580 CRYST1 71.810 71.810 143.990 90.00 90.00 120.00 H 3 9 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013926 0.008040 0.000000 0.00000 SCALE2 0.000000 0.016080 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006945 0.00000