HEADER TRANSFERASE 08-FEB-17 5N3C TITLE CAMP-DEPENDENT PROTEIN KINASE A FROM CRICETULUS GRISEUS IN COMPLEX TITLE 2 WITH FRAGMENT LIKE MOLECULE THIOPHENE-3-CARBOXIMIDAMIDE COMPND MOL_ID: 1; COMPND 2 MOLECULE: CAMP-DEPENDENT PROTEIN KINASE CATALYTIC SUBUNIT ALPHA; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: PKA C-ALPHA; COMPND 5 EC: 2.7.11.11; COMPND 6 ENGINEERED: YES; COMPND 7 OTHER_DETAILS: PHOSPHORYLATION OF S11, S140, T198 AND S339; COMPND 8 MOL_ID: 2; COMPND 9 MOLECULE: CAMP DEPENDENT PROTEIN KINASE INHIBITOR ALPHA-LIKE PROTEIN; COMPND 10 CHAIN: B; COMPND 11 ENGINEERED: YES; COMPND 12 OTHER_DETAILS: CAMP DEPENDENT PROTEIN KINASE INHIBITOR PEPTIDE SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: CRICETULUS GRISEUS; SOURCE 3 ORGANISM_COMMON: CHINESE HAMSTER; SOURCE 4 ORGANISM_TAXID: 10029; SOURCE 5 GENE: PRKACA; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_VARIANT: PLYSS; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PET-16BTEV; SOURCE 10 MOL_ID: 2; SOURCE 11 SYNTHETIC: YES; SOURCE 12 ORGANISM_SCIENTIFIC: CRICETULUS GRISEUS; SOURCE 13 ORGANISM_COMMON: CHINESE HAMSTER; SOURCE 14 ORGANISM_TAXID: 10029 KEYWDS FRAGMENT, COMPLEX, TRANSFERASE, SERINE THREONINE KINASE, CAMP, KEYWDS 2 KINASE, PKA EXPDTA X-RAY DIFFRACTION AUTHOR C.SIEFKER,A.HEINE,G.KLEBE REVDAT 4 17-JAN-24 5N3C 1 REMARK REVDAT 3 09-DEC-20 5N3C 1 JRNL REVDAT 2 14-AUG-19 5N3C 1 REMARK REVDAT 1 28-FEB-18 5N3C 0 JRNL AUTH M.OEBBEKE,C.SIEFKER,B.WAGNER,A.HEINE,G.KLEBE JRNL TITL FRAGMENT BINDING TO KINASE HINGE: IF CHARGE DISTRIBUTION AND JRNL TITL 2 LOCAL PK A SHIFTS MISLEAD POPULAR BIOISOSTERISM CONCEPTS. JRNL REF ANGEW.CHEM.INT.ED.ENGL. 2020 JRNL REFN ESSN 1521-3773 JRNL PMID 33021032 JRNL DOI 10.1002/ANIE.202011295 REMARK 2 REMARK 2 RESOLUTION. 1.77 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.10.1_2155: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.77 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 45.59 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.370 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 45616 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.179 REMARK 3 R VALUE (WORKING SET) : 0.178 REMARK 3 FREE R VALUE : 0.196 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 2281 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 45.6048 - 4.4646 1.00 2905 154 0.1882 0.1971 REMARK 3 2 4.4646 - 3.5441 1.00 2787 146 0.1548 0.1675 REMARK 3 3 3.5441 - 3.0962 1.00 2739 144 0.1704 0.1841 REMARK 3 4 3.0962 - 2.8132 1.00 2724 144 0.1655 0.1911 REMARK 3 5 2.8132 - 2.6116 1.00 2728 143 0.1644 0.1756 REMARK 3 6 2.6116 - 2.4576 1.00 2682 142 0.1602 0.1725 REMARK 3 7 2.4576 - 2.3345 1.00 2706 142 0.1584 0.1635 REMARK 3 8 2.3345 - 2.2329 1.00 2721 143 0.1606 0.1772 REMARK 3 9 2.2329 - 2.1469 1.00 2683 141 0.1654 0.1739 REMARK 3 10 2.1469 - 2.0729 1.00 2665 141 0.1765 0.2408 REMARK 3 11 2.0729 - 2.0080 1.00 2701 142 0.1881 0.2191 REMARK 3 12 2.0080 - 1.9506 1.00 2669 140 0.1963 0.2383 REMARK 3 13 1.9506 - 1.8993 1.00 2684 141 0.2394 0.2588 REMARK 3 14 1.8993 - 1.8529 1.00 2704 143 0.2776 0.3121 REMARK 3 15 1.8529 - 1.8108 1.00 2633 138 0.2597 0.3006 REMARK 3 16 1.8108 - 1.7723 0.97 2604 137 0.2680 0.2630 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.170 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 19.220 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.007 3074 REMARK 3 ANGLE : 0.894 4189 REMARK 3 CHIRALITY : 0.054 446 REMARK 3 PLANARITY : 0.006 547 REMARK 3 DIHEDRAL : 14.042 1832 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 8 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID -2 THROUGH 31 ) REMARK 3 ORIGIN FOR THE GROUP (A): -8.9143 8.1895 -1.6065 REMARK 3 T TENSOR REMARK 3 T11: 0.1476 T22: 0.3325 REMARK 3 T33: 0.1564 T12: -0.1209 REMARK 3 T13: 0.0683 T23: -0.0274 REMARK 3 L TENSOR REMARK 3 L11: 0.3500 L22: 0.2620 REMARK 3 L33: 0.2179 L12: -0.0860 REMARK 3 L13: -0.2631 L23: -0.0973 REMARK 3 S TENSOR REMARK 3 S11: -0.0783 S12: -0.2185 S13: -0.1098 REMARK 3 S21: 0.0286 S22: -0.0065 S23: 0.0806 REMARK 3 S31: 0.1869 S32: 0.3284 S33: -0.0377 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 32 THROUGH 62 ) REMARK 3 ORIGIN FOR THE GROUP (A): -23.3513 23.2819 -31.2970 REMARK 3 T TENSOR REMARK 3 T11: 0.1300 T22: 0.3272 REMARK 3 T33: 0.4818 T12: -0.0143 REMARK 3 T13: -0.2005 T23: 0.0283 REMARK 3 L TENSOR REMARK 3 L11: 0.4408 L22: 0.3024 REMARK 3 L33: 0.5792 L12: 0.1908 REMARK 3 L13: -0.0169 L23: 0.3224 REMARK 3 S TENSOR REMARK 3 S11: 0.1810 S12: 0.3528 S13: -0.0649 REMARK 3 S21: -0.5624 S22: -0.0031 S23: 0.6052 REMARK 3 S31: -0.3482 S32: -0.1128 S33: 0.2921 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 63 THROUGH 140 ) REMARK 3 ORIGIN FOR THE GROUP (A): -14.4189 19.8678 -25.6790 REMARK 3 T TENSOR REMARK 3 T11: 0.1076 T22: 0.1785 REMARK 3 T33: 0.1389 T12: 0.0067 REMARK 3 T13: -0.0452 T23: -0.0276 REMARK 3 L TENSOR REMARK 3 L11: 0.6181 L22: 0.8650 REMARK 3 L33: 0.1434 L12: -0.3785 REMARK 3 L13: 0.1721 L23: -0.3418 REMARK 3 S TENSOR REMARK 3 S11: 0.1118 S12: 0.1817 S13: -0.0404 REMARK 3 S21: -0.1115 S22: -0.0504 S23: 0.2345 REMARK 3 S31: 0.0242 S32: -0.0567 S33: 0.0572 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 141 THROUGH 160 ) REMARK 3 ORIGIN FOR THE GROUP (A): -5.0792 18.7737 -10.4384 REMARK 3 T TENSOR REMARK 3 T11: 0.1444 T22: 0.1008 REMARK 3 T33: 0.0854 T12: -0.0251 REMARK 3 T13: 0.0228 T23: 0.0001 REMARK 3 L TENSOR REMARK 3 L11: 0.1756 L22: 0.0914 REMARK 3 L33: 0.0617 L12: -0.0381 REMARK 3 L13: 0.0839 L23: -0.0177 REMARK 3 S TENSOR REMARK 3 S11: -0.0095 S12: -0.0599 S13: 0.0212 REMARK 3 S21: 0.1434 S22: -0.0007 S23: 0.0112 REMARK 3 S31: 0.0183 S32: -0.1595 S33: -0.0222 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 161 THROUGH 251 ) REMARK 3 ORIGIN FOR THE GROUP (A): 0.9384 17.1104 -22.2817 REMARK 3 T TENSOR REMARK 3 T11: 0.0917 T22: 0.0601 REMARK 3 T33: 0.0812 T12: -0.0117 REMARK 3 T13: -0.0015 T23: 0.0034 REMARK 3 L TENSOR REMARK 3 L11: 0.4634 L22: 0.7529 REMARK 3 L33: 0.3230 L12: 0.1609 REMARK 3 L13: 0.2996 L23: 0.1177 REMARK 3 S TENSOR REMARK 3 S11: -0.0024 S12: 0.0789 S13: 0.0297 REMARK 3 S21: -0.0140 S22: 0.0130 S23: -0.0487 REMARK 3 S31: 0.0124 S32: 0.0150 S33: -0.0021 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 252 THROUGH 316 ) REMARK 3 ORIGIN FOR THE GROUP (A): 4.4606 19.8435 -7.8903 REMARK 3 T TENSOR REMARK 3 T11: 0.1564 T22: 0.0925 REMARK 3 T33: 0.0938 T12: -0.0049 REMARK 3 T13: -0.0193 T23: 0.0092 REMARK 3 L TENSOR REMARK 3 L11: 0.3967 L22: 0.5585 REMARK 3 L33: 0.4609 L12: 0.0921 REMARK 3 L13: 0.2989 L23: 0.2516 REMARK 3 S TENSOR REMARK 3 S11: 0.0120 S12: -0.0966 S13: -0.0103 REMARK 3 S21: 0.2987 S22: -0.0238 S23: -0.1173 REMARK 3 S31: 0.0957 S32: 0.0229 S33: -0.1155 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 317 THROUGH 350 ) REMARK 3 ORIGIN FOR THE GROUP (A): -19.0984 22.8421 -34.8019 REMARK 3 T TENSOR REMARK 3 T11: 0.2468 T22: 0.3339 REMARK 3 T33: 0.2786 T12: 0.1210 REMARK 3 T13: -0.2282 T23: -0.0253 REMARK 3 L TENSOR REMARK 3 L11: 0.5564 L22: 0.3289 REMARK 3 L33: 0.4921 L12: -0.0114 REMARK 3 L13: -0.2912 L23: -0.0206 REMARK 3 S TENSOR REMARK 3 S11: 0.4411 S12: 0.5304 S13: 0.0321 REMARK 3 S21: -0.4581 S22: -0.1786 S23: 0.1655 REMARK 3 S31: -0.0871 S32: 0.0488 S33: 0.6469 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 13 THROUGH 25 ) REMARK 3 ORIGIN FOR THE GROUP (A): 0.8630 22.7832 -31.5573 REMARK 3 T TENSOR REMARK 3 T11: 0.2585 T22: 0.1426 REMARK 3 T33: 0.1806 T12: 0.0194 REMARK 3 T13: -0.0144 T23: 0.0250 REMARK 3 L TENSOR REMARK 3 L11: 0.0523 L22: 0.0348 REMARK 3 L33: 0.0291 L12: -0.0520 REMARK 3 L13: 0.0249 L23: -0.0201 REMARK 3 S TENSOR REMARK 3 S11: 0.1829 S12: 0.2038 S13: 0.0237 REMARK 3 S21: -0.2581 S22: -0.2232 S23: -0.1776 REMARK 3 S31: 0.2992 S32: 0.1248 S33: -0.0006 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5N3C COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 09-FEB-17. REMARK 100 THE DEPOSITION ID IS D_1200003180. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 13-JUL-16 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.9 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID23-2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.873 REMARK 200 MONOCHROMATOR : SI-111 CRYSTAL MONOCHROMATOR REMARK 200 OPTICS : SILICON REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 225 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 45623 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.770 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 6.580 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 13.2400 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.77 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.88 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.9 REMARK 200 DATA REDUNDANCY IN SHELL : 6.41 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.060 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 4WIH REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 57.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.84 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: MES-BIS-TRIS MEGA8-SOLUTION DTT EDTA REMARK 280 LICL METHANOL, PH 6.9, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 29.25650 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 54.27500 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 36.36400 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 54.27500 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 29.25650 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 36.36400 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2280 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 16140 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -13.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A 34 REMARK 465 ILE B 11 REMARK 465 ALA B 12 REMARK 465 LEU B 26 REMARK 465 VAL B 27 REMARK 465 ALA B 28 REMARK 465 ALA B 29 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ASN A 2 CG OD1 ND2 REMARK 470 LYS A 7 CE NZ REMARK 470 LYS A 8 CD CE NZ REMARK 470 LYS A 16 CE NZ REMARK 470 LYS A 21 CD CE NZ REMARK 470 LYS A 23 CE NZ REMARK 470 LYS A 28 CD CE NZ REMARK 470 LYS A 29 CE NZ REMARK 470 GLU A 31 CG CD OE1 OE2 REMARK 470 SER A 32 OG REMARK 470 GLN A 35 CG CD OE1 NE2 REMARK 470 ASN A 36 OD1 ND2 REMARK 470 SER A 53 OG REMARK 470 PHE A 54 CD1 CD2 CE1 CE2 CZ REMARK 470 ARG A 56 NH1 NH2 REMARK 470 LYS A 61 CE NZ REMARK 470 GLU A 64 CG CD OE1 OE2 REMARK 470 LYS A 78 CG CD CE NZ REMARK 470 LYS A 81 CG CD CE NZ REMARK 470 LEU A 82 CD1 CD2 REMARK 470 LYS A 92 CE NZ REMARK 470 ILE A 135 CD1 REMARK 470 GLN A 176 CG CD OE1 NE2 REMARK 470 LYS A 192 CD CE NZ REMARK 470 GLN A 242 OE1 NE2 REMARK 470 ILE A 244 CD1 REMARK 470 GLU A 248 CD OE1 OE2 REMARK 470 LYS A 254 CG CD CE NZ REMARK 470 ARG A 256 NE CZ NH1 NH2 REMARK 470 LYS A 285 CG CD CE NZ REMARK 470 LYS A 295 CD CE NZ REMARK 470 LYS A 317 CG CD CE NZ REMARK 470 PHE A 318 CG CD1 CD2 CE1 CE2 CZ REMARK 470 LYS A 319 CG CD CE NZ REMARK 470 GLU A 331 CG CD OE1 OE2 REMARK 470 GLU A 333 CG CD OE1 OE2 REMARK 470 GLU A 334 CG CD OE1 OE2 REMARK 470 ILE A 335 CG1 CG2 CD1 REMARK 470 ARG A 336 CG CD NE CZ NH1 NH2 REMARK 470 ILE A 339 CD1 REMARK 470 LYS A 345 CG CD CE NZ REMARK 470 GLU A 349 CG CD OE1 OE2 REMARK 470 ILE B 25 CG1 CG2 CD1 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 HE21 GLN A 39 OD1 ASP A 41 1.53 REMARK 500 OE2 GLU A 91 O HOH A 501 2.12 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 144 NE - CZ - NH1 ANGL. DEV. = 3.0 DEGREES REMARK 500 ARG A 144 NE - CZ - NH2 ANGL. DEV. = -3.0 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 38 -175.18 -175.94 REMARK 500 ASN A 99 114.20 -160.11 REMARK 500 ASP A 166 39.98 -143.78 REMARK 500 THR A 183 -161.58 -119.65 REMARK 500 ASP A 184 76.61 58.89 REMARK 500 ASP A 184 109.87 32.38 REMARK 500 ASP B 24 96.17 -160.37 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 8M2 A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MPD A 402 DBREF 5N3C A 0 350 UNP P25321 KAPCA_CRIGR 1 351 DBREF 5N3C B 11 29 PDB 5N3C 5N3C 11 29 SEQADV 5N3C GLY A -2 UNP P25321 EXPRESSION TAG SEQADV 5N3C HIS A -1 UNP P25321 EXPRESSION TAG SEQRES 1 A 353 GLY HIS MET GLY ASN ALA ALA ALA ALA LYS LYS GLY SEP SEQRES 2 A 353 GLU GLN GLU SER VAL LYS GLU PHE LEU ALA LYS ALA LYS SEQRES 3 A 353 GLU GLU PHE LEU LYS LYS TRP GLU SER PRO SER GLN ASN SEQRES 4 A 353 THR ALA GLN LEU ASP HIS PHE ASP ARG ILE LYS THR LEU SEQRES 5 A 353 GLY THR GLY SER PHE GLY ARG VAL MET LEU VAL LYS HIS SEQRES 6 A 353 LYS GLU THR GLY ASN HIS TYR ALA MET LYS ILE LEU ASP SEQRES 7 A 353 LYS GLN LYS VAL VAL LYS LEU LYS GLN ILE GLU HIS THR SEQRES 8 A 353 LEU ASN GLU LYS ARG ILE LEU GLN ALA VAL ASN PHE PRO SEQRES 9 A 353 PHE LEU VAL LYS LEU GLU PHE SER PHE LYS ASP ASN SER SEQRES 10 A 353 ASN LEU TYR MET VAL MET GLU TYR VAL PRO GLY GLY GLU SEQRES 11 A 353 MET PHE SER HIS LEU ARG ARG ILE GLY ARG PHE SEP GLU SEQRES 12 A 353 PRO HIS ALA ARG PHE TYR ALA ALA GLN ILE VAL LEU THR SEQRES 13 A 353 PHE GLU TYR LEU HIS SER LEU ASP LEU ILE TYR ARG ASP SEQRES 14 A 353 LEU LYS PRO GLU ASN LEU LEU ILE ASP GLN GLN GLY TYR SEQRES 15 A 353 ILE GLN VAL THR ASP PHE GLY PHE ALA LYS ARG VAL LYS SEQRES 16 A 353 GLY ARG THR TRP TPO LEU CYS GLY THR PRO GLU TYR LEU SEQRES 17 A 353 ALA PRO GLU ILE ILE LEU SER LYS GLY TYR ASN LYS ALA SEQRES 18 A 353 VAL ASP TRP TRP ALA LEU GLY VAL LEU ILE TYR GLU MET SEQRES 19 A 353 ALA ALA GLY TYR PRO PRO PHE PHE ALA ASP GLN PRO ILE SEQRES 20 A 353 GLN ILE TYR GLU LYS ILE VAL SER GLY LYS VAL ARG PHE SEQRES 21 A 353 PRO SER HIS PHE SER SER ASP LEU LYS ASP LEU LEU ARG SEQRES 22 A 353 ASN LEU LEU GLN VAL ASP LEU THR LYS ARG PHE GLY ASN SEQRES 23 A 353 LEU LYS ASN GLY VAL ASN ASP ILE LYS ASN HIS LYS TRP SEQRES 24 A 353 PHE ALA THR THR ASP TRP ILE ALA ILE TYR GLN ARG LYS SEQRES 25 A 353 VAL GLU ALA PRO PHE ILE PRO LYS PHE LYS GLY PRO GLY SEQRES 26 A 353 ASP THR SER ASN PHE ASP ASP TYR GLU GLU GLU GLU ILE SEQRES 27 A 353 ARG VAL SEP ILE ASN GLU LYS CYS GLY LYS GLU PHE THR SEQRES 28 A 353 GLU PHE SEQRES 1 B 19 ILE ALA ALA GLY ARG THR GLY ARG ARG GLN ALA ILE HIS SEQRES 2 B 19 ASP ILE LEU VAL ALA ALA MODRES 5N3C SEP A 10 SER MODIFIED RESIDUE MODRES 5N3C SEP A 139 SER MODIFIED RESIDUE MODRES 5N3C TPO A 197 THR MODIFIED RESIDUE MODRES 5N3C SEP A 338 SER MODIFIED RESIDUE HET SEP A 10 14 HET SEP A 139 28 HET TPO A 197 17 HET SEP A 338 14 HET 8M2 A 401 15 HET MPD A 402 22 HETNAM SEP PHOSPHOSERINE HETNAM TPO PHOSPHOTHREONINE HETNAM 8M2 [AZANYL(THIOPHEN-3-YL)METHYLIDENE]AZANIUM HETNAM MPD (4S)-2-METHYL-2,4-PENTANEDIOL HETSYN SEP PHOSPHONOSERINE HETSYN TPO PHOSPHONOTHREONINE FORMUL 1 SEP 3(C3 H8 N O6 P) FORMUL 1 TPO C4 H10 N O6 P FORMUL 3 8M2 C5 H7 N2 S 1+ FORMUL 4 MPD C6 H14 O2 FORMUL 5 HOH *235(H2 O) HELIX 1 AA1 GLY A 1 SER A 32 1 32 HELIX 2 AA2 GLN A 39 ASP A 41 5 3 HELIX 3 AA3 LYS A 81 VAL A 98 1 18 HELIX 4 AA4 GLU A 127 GLY A 136 1 10 HELIX 5 AA5 SEP A 139 LEU A 160 1 22 HELIX 6 AA6 LYS A 168 GLU A 170 5 3 HELIX 7 AA7 THR A 201 LEU A 205 5 5 HELIX 8 AA8 ALA A 206 LEU A 211 1 6 HELIX 9 AA9 LYS A 217 GLY A 234 1 18 HELIX 10 AB1 GLN A 242 SER A 252 1 11 HELIX 11 AB2 SER A 262 LEU A 273 1 12 HELIX 12 AB3 VAL A 288 ASN A 293 1 6 HELIX 13 AB4 HIS A 294 ALA A 298 5 5 HELIX 14 AB5 ASP A 301 GLN A 307 1 7 SHEET 1 AA1 5 PHE A 43 GLY A 52 0 SHEET 2 AA1 5 GLY A 55 HIS A 62 -1 O VAL A 57 N LEU A 49 SHEET 3 AA1 5 HIS A 68 ASP A 75 -1 O MET A 71 N MET A 58 SHEET 4 AA1 5 ASN A 115 GLU A 121 -1 O MET A 120 N ALA A 70 SHEET 5 AA1 5 LEU A 106 LYS A 111 -1 N GLU A 107 O VAL A 119 SHEET 1 AA2 2 LEU A 162 ILE A 163 0 SHEET 2 AA2 2 LYS A 189 ARG A 190 -1 O LYS A 189 N ILE A 163 SHEET 1 AA3 2 LEU A 172 ILE A 174 0 SHEET 2 AA3 2 ILE A 180 VAL A 182 -1 O GLN A 181 N LEU A 173 LINK C GLY A 9 N SEP A 10 1555 1555 1.33 LINK C SEP A 10 N GLU A 11 1555 1555 1.33 LINK C PHE A 138 N ASEP A 139 1555 1555 1.33 LINK C PHE A 138 N BSEP A 139 1555 1555 1.33 LINK C ASEP A 139 N GLU A 140 1555 1555 1.34 LINK C BSEP A 139 N GLU A 140 1555 1555 1.33 LINK C TRP A 196 N TPO A 197 1555 1555 1.33 LINK C TPO A 197 N LEU A 198 1555 1555 1.34 LINK C VAL A 337 N SEP A 338 1555 1555 1.33 LINK C SEP A 338 N ILE A 339 1555 1555 1.33 SITE 1 AC1 6 LEU A 49 GLU A 127 GLU A 170 ASP A 184 SITE 2 AC1 6 PHE A 327 HOH A 684 SITE 1 AC2 4 VAL A 15 LEU A 152 GLU A 155 TYR A 306 CRYST1 58.513 72.728 108.550 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.017090 0.000000 0.000000 0.00000 SCALE2 0.000000 0.013750 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009212 0.00000