HEADER TRANSFERASE 08-FEB-17 5N3D TITLE CAMP-DEPENDENT PROTEIN KINASE A FROM CRICETULUS GRISEUS IN COMPLEX TITLE 2 WITH FRAGMENT LIKE MOLECULE 4-(TRIFLUOROMETHYL)BENZENECARBOXIMIDAMIDE COMPND MOL_ID: 1; COMPND 2 MOLECULE: CAMP-DEPENDENT PROTEIN KINASE CATALYTIC SUBUNIT ALPHA; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: PKA C-ALPHA; COMPND 5 EC: 2.7.11.11; COMPND 6 ENGINEERED: YES; COMPND 7 OTHER_DETAILS: PHOSPHORYLATION OF S11, S140, T198 AND S339; COMPND 8 MOL_ID: 2; COMPND 9 MOLECULE: CAMP-DEPENDENT PROTEIN KINASE INHIBITOR ALPHA-LIKE PROTEIN; COMPND 10 CHAIN: B; COMPND 11 ENGINEERED: YES; COMPND 12 OTHER_DETAILS: CAMP DEPENDENT PROTEIN KINASE INHIBITOR PEPTIDE SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: CRICETULUS GRISEUS; SOURCE 3 ORGANISM_COMMON: CHINESE HAMSTER; SOURCE 4 ORGANISM_TAXID: 10029; SOURCE 5 GENE: PRKACA; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_VARIANT: PLYSS; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET-16BTEV; SOURCE 11 MOL_ID: 2; SOURCE 12 SYNTHETIC: YES; SOURCE 13 ORGANISM_SCIENTIFIC: CRICETULUS GRISEUS; SOURCE 14 ORGANISM_COMMON: CHINESE HAMSTER; SOURCE 15 ORGANISM_TAXID: 10029 KEYWDS FRAGMENT, COMPLEX, TRANSFERASE, SERINE THREONINE KINASE, CAMP, KEYWDS 2 KINASE, PKA EXPDTA X-RAY DIFFRACTION AUTHOR C.SIEFKER,A.HEINE,G.KLEBE REVDAT 4 17-JAN-24 5N3D 1 REMARK REVDAT 3 09-DEC-20 5N3D 1 JRNL REVDAT 2 14-AUG-19 5N3D 1 REMARK REVDAT 1 28-FEB-18 5N3D 0 JRNL AUTH M.OEBBEKE,C.SIEFKER,B.WAGNER,A.HEINE,G.KLEBE JRNL TITL FRAGMENT BINDING TO KINASE HINGE: IF CHARGE DISTRIBUTION AND JRNL TITL 2 LOCAL PK A SHIFTS MISLEAD POPULAR BIOISOSTERISM CONCEPTS. JRNL REF ANGEW.CHEM.INT.ED.ENGL. 2020 JRNL REFN ESSN 1521-3773 JRNL PMID 33021032 JRNL DOI 10.1002/ANIE.202011295 REMARK 2 REMARK 2 RESOLUTION. 1.77 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.10.1_2155: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.77 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 45.46 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.360 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 3 NUMBER OF REFLECTIONS : 44968 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.169 REMARK 3 R VALUE (WORKING SET) : 0.168 REMARK 3 FREE R VALUE : 0.193 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 2249 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 45.4765 - 4.4695 0.99 2859 151 0.1852 0.2153 REMARK 3 2 4.4695 - 3.5480 1.00 2754 145 0.1510 0.1815 REMARK 3 3 3.5480 - 3.0997 1.00 2699 142 0.1660 0.1676 REMARK 3 4 3.0997 - 2.8163 1.00 2706 142 0.1679 0.2067 REMARK 3 5 2.8163 - 2.6145 1.00 2683 142 0.1602 0.1977 REMARK 3 6 2.6145 - 2.4603 1.00 2664 140 0.1576 0.1642 REMARK 3 7 2.4603 - 2.3371 1.00 2653 140 0.1526 0.1708 REMARK 3 8 2.3371 - 2.2354 0.99 2666 140 0.1544 0.1980 REMARK 3 9 2.2354 - 2.1493 1.00 2665 140 0.1598 0.1754 REMARK 3 10 2.1493 - 2.0752 1.00 2639 139 0.1701 0.2134 REMARK 3 11 2.0752 - 2.0103 0.99 2620 138 0.1736 0.2048 REMARK 3 12 2.0103 - 1.9528 0.99 2627 138 0.1740 0.1994 REMARK 3 13 1.9528 - 1.9014 0.99 2622 138 0.1784 0.1856 REMARK 3 14 1.9014 - 1.8550 0.99 2641 139 0.1873 0.2328 REMARK 3 15 1.8550 - 1.8128 0.99 2604 137 0.2073 0.2317 REMARK 3 16 1.8128 - 1.7743 0.98 2617 138 0.2152 0.2376 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.150 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 17.740 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.007 3036 REMARK 3 ANGLE : 0.868 4132 REMARK 3 CHIRALITY : 0.054 440 REMARK 3 PLANARITY : 0.006 539 REMARK 3 DIHEDRAL : 14.538 1807 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 8 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID -2 THROUGH 31 ) REMARK 3 ORIGIN FOR THE GROUP (A): -8.9878 7.8062 -2.3825 REMARK 3 T TENSOR REMARK 3 T11: 0.1595 T22: 0.3566 REMARK 3 T33: 0.2446 T12: -0.1848 REMARK 3 T13: 0.0944 T23: -0.0627 REMARK 3 L TENSOR REMARK 3 L11: 0.6495 L22: 0.8854 REMARK 3 L33: 0.3253 L12: -0.3016 REMARK 3 L13: -0.4493 L23: -0.0508 REMARK 3 S TENSOR REMARK 3 S11: -0.2018 S12: -0.2086 S13: -0.2616 REMARK 3 S21: 0.2961 S22: 0.3230 S23: -0.0318 REMARK 3 S31: 0.1758 S32: 0.6470 S33: 0.0899 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 32 THROUGH 62 ) REMARK 3 ORIGIN FOR THE GROUP (A): -23.1720 24.0209 -31.3035 REMARK 3 T TENSOR REMARK 3 T11: 0.1843 T22: 0.3989 REMARK 3 T33: 0.5281 T12: -0.0523 REMARK 3 T13: -0.1707 T23: 0.0254 REMARK 3 L TENSOR REMARK 3 L11: 0.5105 L22: 0.6791 REMARK 3 L33: 0.7416 L12: 0.2230 REMARK 3 L13: -0.0650 L23: 0.5767 REMARK 3 S TENSOR REMARK 3 S11: 0.2092 S12: 0.4728 S13: -0.2103 REMARK 3 S21: -0.6540 S22: -0.0276 S23: 0.6753 REMARK 3 S31: -0.1680 S32: -0.2339 S33: 0.3762 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 63 THROUGH 160 ) REMARK 3 ORIGIN FOR THE GROUP (A): -12.3372 20.2105 -22.3977 REMARK 3 T TENSOR REMARK 3 T11: 0.1068 T22: 0.2054 REMARK 3 T33: 0.1587 T12: -0.0168 REMARK 3 T13: -0.0138 T23: -0.0195 REMARK 3 L TENSOR REMARK 3 L11: 1.1620 L22: 1.4102 REMARK 3 L33: 0.4106 L12: -0.2972 REMARK 3 L13: 0.1749 L23: -0.4700 REMARK 3 S TENSOR REMARK 3 S11: 0.0924 S12: 0.1355 S13: -0.0108 REMARK 3 S21: -0.0551 S22: -0.0532 S23: 0.3121 REMARK 3 S31: 0.0450 S32: -0.1619 S33: 0.0481 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 161 THROUGH 252 ) REMARK 3 ORIGIN FOR THE GROUP (A): 1.3250 17.3711 -22.3305 REMARK 3 T TENSOR REMARK 3 T11: 0.1113 T22: 0.1128 REMARK 3 T33: 0.1335 T12: -0.0181 REMARK 3 T13: 0.0027 T23: 0.0078 REMARK 3 L TENSOR REMARK 3 L11: 0.5666 L22: 1.1053 REMARK 3 L33: 0.5036 L12: 0.1302 REMARK 3 L13: 0.3499 L23: 0.3276 REMARK 3 S TENSOR REMARK 3 S11: -0.0006 S12: 0.1191 S13: 0.0361 REMARK 3 S21: -0.0387 S22: 0.0100 S23: -0.0793 REMARK 3 S31: 0.0172 S32: -0.0120 S33: -0.0002 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 253 THROUGH 272 ) REMARK 3 ORIGIN FOR THE GROUP (A): 12.9218 24.6684 -10.7622 REMARK 3 T TENSOR REMARK 3 T11: 0.1576 T22: 0.1394 REMARK 3 T33: 0.2010 T12: -0.0237 REMARK 3 T13: -0.0783 T23: 0.0180 REMARK 3 L TENSOR REMARK 3 L11: 0.1010 L22: 0.1597 REMARK 3 L33: 0.0565 L12: -0.0283 REMARK 3 L13: -0.0067 L23: 0.0829 REMARK 3 S TENSOR REMARK 3 S11: -0.0617 S12: -0.0574 S13: 0.0584 REMARK 3 S21: 0.2571 S22: -0.0083 S23: -0.3088 REMARK 3 S31: -0.0397 S32: 0.1311 S33: -0.0591 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 273 THROUGH 316 ) REMARK 3 ORIGIN FOR THE GROUP (A): 0.3550 18.3453 -6.4121 REMARK 3 T TENSOR REMARK 3 T11: 0.2096 T22: 0.1641 REMARK 3 T33: 0.1325 T12: -0.0229 REMARK 3 T13: 0.0025 T23: 0.0112 REMARK 3 L TENSOR REMARK 3 L11: 0.5720 L22: 0.5700 REMARK 3 L33: 0.6279 L12: 0.3619 REMARK 3 L13: 0.4707 L23: 0.1130 REMARK 3 S TENSOR REMARK 3 S11: 0.0793 S12: -0.2066 S13: -0.0454 REMARK 3 S21: 0.3013 S22: -0.0770 S23: -0.0460 REMARK 3 S31: 0.1357 S32: -0.0270 S33: 0.0060 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 317 THROUGH 350 ) REMARK 3 ORIGIN FOR THE GROUP (A): -18.8899 23.5282 -34.6675 REMARK 3 T TENSOR REMARK 3 T11: 0.2002 T22: 0.4468 REMARK 3 T33: 0.2989 T12: 0.0688 REMARK 3 T13: -0.2775 T23: -0.0145 REMARK 3 L TENSOR REMARK 3 L11: 0.6546 L22: 0.7940 REMARK 3 L33: 0.7159 L12: 0.1042 REMARK 3 L13: -0.3799 L23: -0.1080 REMARK 3 S TENSOR REMARK 3 S11: 0.5038 S12: 0.6019 S13: 0.1192 REMARK 3 S21: -0.3680 S22: -0.0888 S23: 0.2321 REMARK 3 S31: -0.0813 S32: -0.0047 S33: 1.1974 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 13 THROUGH 25 ) REMARK 3 ORIGIN FOR THE GROUP (A): 1.0149 23.7837 -31.2330 REMARK 3 T TENSOR REMARK 3 T11: 0.2852 T22: 0.2290 REMARK 3 T33: 0.2472 T12: 0.0273 REMARK 3 T13: -0.0209 T23: 0.0292 REMARK 3 L TENSOR REMARK 3 L11: 0.1805 L22: 0.2330 REMARK 3 L33: 0.0454 L12: -0.2336 REMARK 3 L13: -0.0143 L23: 0.0279 REMARK 3 S TENSOR REMARK 3 S11: 0.2995 S12: 0.2831 S13: 0.0098 REMARK 3 S21: -0.3937 S22: -0.2131 S23: -0.4199 REMARK 3 S31: 0.1577 S32: -0.0272 S33: 0.0103 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5N3D COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 09-FEB-17. REMARK 100 THE DEPOSITION ID IS D_1200003184. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 23-APR-16 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.9 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : BESSY REMARK 200 BEAMLINE : 14.1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.918409 REMARK 200 MONOCHROMATOR : SI-111 CRYSTAL MONOCHROMATOR REMARK 200 OPTICS : SILICON, ACTIVE SURFACE REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 44971 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.770 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 200 DATA REDUNDANCY : 6.640 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 22.7900 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.77 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.88 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.0 REMARK 200 DATA REDUNDANCY IN SHELL : 6.79 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.690 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 4WIH REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 56.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.82 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: MES-BIS-TRIS MEGA8-SOLUTION DTT EDTA REMARK 280 LICL METHANOL, PH 6.9, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 29.20950 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 54.19150 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 36.19450 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 54.19150 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 29.20950 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 36.19450 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2240 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 15990 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -14.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ASN A 2 REMARK 465 SER A 34 REMARK 465 GLN A 35 REMARK 465 ILE B 11 REMARK 465 ALA B 12 REMARK 465 LEU B 26 REMARK 465 VAL B 27 REMARK 465 ALA B 28 REMARK 465 ALA B 29 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 7 CG CD CE NZ REMARK 470 LYS A 8 CD CE NZ REMARK 470 LYS A 16 NZ REMARK 470 LYS A 21 CD CE NZ REMARK 470 GLU A 24 CG CD OE1 OE2 REMARK 470 LYS A 28 CG CD CE NZ REMARK 470 LYS A 29 CE NZ REMARK 470 GLU A 31 CG CD OE1 OE2 REMARK 470 SER A 32 OG REMARK 470 ASN A 36 CG OD1 ND2 REMARK 470 SER A 53 OG REMARK 470 PHE A 54 CD1 CD2 CE1 CE2 CZ REMARK 470 ARG A 56 CZ NH1 NH2 REMARK 470 LYS A 61 CE NZ REMARK 470 LYS A 63 NZ REMARK 470 GLU A 64 CG CD OE1 OE2 REMARK 470 LYS A 78 CD CE NZ REMARK 470 VAL A 80 CG1 CG2 REMARK 470 LYS A 81 CG CD CE NZ REMARK 470 LEU A 82 CD1 CD2 REMARK 470 ILE A 85 CD1 REMARK 470 LYS A 92 CE NZ REMARK 470 GLN A 176 CD OE1 NE2 REMARK 470 LYS A 192 CD CE NZ REMARK 470 ILE A 244 CD1 REMARK 470 GLU A 248 CD OE1 OE2 REMARK 470 LYS A 254 CG CD CE NZ REMARK 470 ARG A 256 CZ NH1 NH2 REMARK 470 LYS A 285 CG CD CE NZ REMARK 470 LYS A 295 CD CE NZ REMARK 470 ILE A 315 CD1 REMARK 470 LYS A 317 CG CD CE NZ REMARK 470 PHE A 318 CG CD1 CD2 CE1 CE2 CZ REMARK 470 LYS A 319 CG CD CE NZ REMARK 470 GLU A 331 CG CD OE1 OE2 REMARK 470 GLU A 333 CG CD OE1 OE2 REMARK 470 GLU A 334 CG CD OE1 OE2 REMARK 470 ILE A 335 CG1 CG2 CD1 REMARK 470 ARG A 336 CG CD NE CZ NH1 NH2 REMARK 470 ILE A 339 CG2 CD1 REMARK 470 LYS A 345 CG CD CE NZ REMARK 470 THR A 348 OG1 CG2 REMARK 470 GLU A 349 CG CD OE1 OE2 REMARK 470 ASP B 24 CG OD1 OD2 REMARK 470 ILE B 25 CG1 CG2 CD1 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 HG SER A 263 O HOH A 502 1.56 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 38 -176.98 -172.95 REMARK 500 ASP A 166 42.31 -145.23 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 8NE A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MPD A 402 DBREF 5N3D A 0 350 UNP P25321 KAPCA_CRIGR 1 351 DBREF1 5N3D B 11 29 UNP A0A061IH64_CRIGR DBREF2 5N3D B A0A061IH64 12 30 SEQADV 5N3D GLY A -2 UNP P25321 EXPRESSION TAG SEQADV 5N3D HIS A -1 UNP P25321 EXPRESSION TAG SEQADV 5N3D ALA B 13 UNP A0A061IH6 SER 14 CONFLICT SEQADV 5N3D GLN B 20 UNP A0A061IH6 ASN 21 CONFLICT SEQADV 5N3D ALA B 28 UNP A0A061IH6 SER 29 CONFLICT SEQADV 5N3D ALA B 29 UNP A0A061IH6 SER 30 CONFLICT SEQRES 1 A 353 GLY HIS MET GLY ASN ALA ALA ALA ALA LYS LYS GLY SEP SEQRES 2 A 353 GLU GLN GLU SER VAL LYS GLU PHE LEU ALA LYS ALA LYS SEQRES 3 A 353 GLU GLU PHE LEU LYS LYS TRP GLU SER PRO SER GLN ASN SEQRES 4 A 353 THR ALA GLN LEU ASP HIS PHE ASP ARG ILE LYS THR LEU SEQRES 5 A 353 GLY THR GLY SER PHE GLY ARG VAL MET LEU VAL LYS HIS SEQRES 6 A 353 LYS GLU THR GLY ASN HIS TYR ALA MET LYS ILE LEU ASP SEQRES 7 A 353 LYS GLN LYS VAL VAL LYS LEU LYS GLN ILE GLU HIS THR SEQRES 8 A 353 LEU ASN GLU LYS ARG ILE LEU GLN ALA VAL ASN PHE PRO SEQRES 9 A 353 PHE LEU VAL LYS LEU GLU PHE SER PHE LYS ASP ASN SER SEQRES 10 A 353 ASN LEU TYR MET VAL MET GLU TYR VAL PRO GLY GLY GLU SEQRES 11 A 353 MET PHE SER HIS LEU ARG ARG ILE GLY ARG PHE SEP GLU SEQRES 12 A 353 PRO HIS ALA ARG PHE TYR ALA ALA GLN ILE VAL LEU THR SEQRES 13 A 353 PHE GLU TYR LEU HIS SER LEU ASP LEU ILE TYR ARG ASP SEQRES 14 A 353 LEU LYS PRO GLU ASN LEU LEU ILE ASP GLN GLN GLY TYR SEQRES 15 A 353 ILE GLN VAL THR ASP PHE GLY PHE ALA LYS ARG VAL LYS SEQRES 16 A 353 GLY ARG THR TRP TPO LEU CYS GLY THR PRO GLU TYR LEU SEQRES 17 A 353 ALA PRO GLU ILE ILE LEU SER LYS GLY TYR ASN LYS ALA SEQRES 18 A 353 VAL ASP TRP TRP ALA LEU GLY VAL LEU ILE TYR GLU MET SEQRES 19 A 353 ALA ALA GLY TYR PRO PRO PHE PHE ALA ASP GLN PRO ILE SEQRES 20 A 353 GLN ILE TYR GLU LYS ILE VAL SER GLY LYS VAL ARG PHE SEQRES 21 A 353 PRO SER HIS PHE SER SER ASP LEU LYS ASP LEU LEU ARG SEQRES 22 A 353 ASN LEU LEU GLN VAL ASP LEU THR LYS ARG PHE GLY ASN SEQRES 23 A 353 LEU LYS ASN GLY VAL ASN ASP ILE LYS ASN HIS LYS TRP SEQRES 24 A 353 PHE ALA THR THR ASP TRP ILE ALA ILE TYR GLN ARG LYS SEQRES 25 A 353 VAL GLU ALA PRO PHE ILE PRO LYS PHE LYS GLY PRO GLY SEQRES 26 A 353 ASP THR SER ASN PHE ASP ASP TYR GLU GLU GLU GLU ILE SEQRES 27 A 353 ARG VAL SEP ILE ASN GLU LYS CYS GLY LYS GLU PHE THR SEQRES 28 A 353 GLU PHE SEQRES 1 B 19 ILE ALA ALA GLY ARG THR GLY ARG ARG GLN ALA ILE HIS SEQRES 2 B 19 ASP ILE LEU VAL ALA ALA MODRES 5N3D SEP A 10 SER MODIFIED RESIDUE MODRES 5N3D SEP A 139 SER MODIFIED RESIDUE MODRES 5N3D TPO A 197 THR MODIFIED RESIDUE MODRES 5N3D SEP A 338 SER MODIFIED RESIDUE HET SEP A 10 14 HET SEP A 139 14 HET TPO A 197 17 HET SEP A 338 14 HET 8NE A 401 21 HET MPD A 402 22 HETNAM SEP PHOSPHOSERINE HETNAM TPO PHOSPHOTHREONINE HETNAM 8NE [AZANYL-[4-(TRIFLUOROMETHYL)PHENYL]METHYLIDENE]AZANIUM HETNAM MPD (4S)-2-METHYL-2,4-PENTANEDIOL HETSYN SEP PHOSPHONOSERINE HETSYN TPO PHOSPHONOTHREONINE FORMUL 1 SEP 3(C3 H8 N O6 P) FORMUL 1 TPO C4 H10 N O6 P FORMUL 3 8NE C8 H8 F3 N2 1+ FORMUL 4 MPD C6 H14 O2 FORMUL 5 HOH *223(H2 O) HELIX 1 AA1 ALA A 4 SER A 32 1 29 HELIX 2 AA2 GLN A 39 ASP A 41 5 3 HELIX 3 AA3 LYS A 81 VAL A 98 1 18 HELIX 4 AA4 GLU A 127 GLY A 136 1 10 HELIX 5 AA5 SEP A 139 LEU A 160 1 22 HELIX 6 AA6 LYS A 168 GLU A 170 5 3 HELIX 7 AA7 THR A 201 LEU A 205 5 5 HELIX 8 AA8 ALA A 206 LEU A 211 1 6 HELIX 9 AA9 LYS A 217 GLY A 234 1 18 HELIX 10 AB1 GLN A 242 GLY A 253 1 12 HELIX 11 AB2 SER A 262 LEU A 273 1 12 HELIX 12 AB3 VAL A 288 ASN A 293 1 6 HELIX 13 AB4 HIS A 294 ALA A 298 5 5 HELIX 14 AB5 ASP A 301 GLN A 307 1 7 HELIX 15 AB6 GLY A 344 THR A 348 5 5 SHEET 1 AA1 5 PHE A 43 THR A 51 0 SHEET 2 AA1 5 GLY A 55 HIS A 62 -1 O VAL A 57 N LEU A 49 SHEET 3 AA1 5 HIS A 68 ASP A 75 -1 O MET A 71 N MET A 58 SHEET 4 AA1 5 ASN A 115 GLU A 121 -1 O MET A 118 N LYS A 72 SHEET 5 AA1 5 LEU A 106 LYS A 111 -1 N GLU A 107 O VAL A 119 SHEET 1 AA2 2 LEU A 162 ILE A 163 0 SHEET 2 AA2 2 LYS A 189 ARG A 190 -1 O LYS A 189 N ILE A 163 SHEET 1 AA3 2 LEU A 172 ILE A 174 0 SHEET 2 AA3 2 ILE A 180 VAL A 182 -1 O GLN A 181 N LEU A 173 LINK C GLY A 9 N SEP A 10 1555 1555 1.33 LINK C SEP A 10 N GLU A 11 1555 1555 1.33 LINK C PHE A 138 N SEP A 139 1555 1555 1.33 LINK C SEP A 139 N GLU A 140 1555 1555 1.34 LINK C TRP A 196 N TPO A 197 1555 1555 1.33 LINK C TPO A 197 N LEU A 198 1555 1555 1.33 LINK C VAL A 337 N SEP A 338 1555 1555 1.33 LINK C SEP A 338 N ILE A 339 1555 1555 1.33 SITE 1 AC1 11 LEU A 49 GLY A 50 VAL A 57 ALA A 70 SITE 2 AC1 11 MET A 120 GLU A 121 TYR A 122 VAL A 123 SITE 3 AC1 11 GLU A 127 LEU A 173 PHE A 327 SITE 1 AC2 4 VAL A 15 LEU A 152 GLU A 155 TYR A 306 CRYST1 58.419 72.389 108.383 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.017118 0.000000 0.000000 0.00000 SCALE2 0.000000 0.013814 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009227 0.00000