HEADER HYDROLASE 09-FEB-17 5N3V TITLE THERMOLYSIN IN COMPLEX WITH INHIBITOR JC292 COMPND MOL_ID: 1; COMPND 2 MOLECULE: THERMOLYSIN; COMPND 3 CHAIN: E; COMPND 4 SYNONYM: THERMOSTABLE NEUTRAL PROTEINASE; COMPND 5 EC: 3.4.24.27 SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BACILLUS THERMOPROTEOLYTICUS; SOURCE 3 ORGANISM_TAXID: 1427 KEYWDS INHIBITOR, PHOSPHONAMIDATE, PROTEASE, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR J.CRAMER,S.G.KRIMMER,A.HEINE,G.KLEBE REVDAT 3 17-JAN-24 5N3V 1 LINK REVDAT 2 26-JUL-17 5N3V 1 REVDAT 1 21-JUN-17 5N3V 0 JRNL AUTH J.CRAMER,S.G.KRIMMER,A.HEINE,G.KLEBE JRNL TITL PAYING THE PRICE OF DESOLVATION IN SOLVENT-EXPOSED PROTEIN JRNL TITL 2 POCKETS: IMPACT OF DISTAL SOLUBILIZING GROUPS ON AFFINITY JRNL TITL 3 AND BINDING THERMODYNAMICS IN A SERIES OF THERMOLYSIN JRNL TITL 4 INHIBITORS. JRNL REF J. MED. CHEM. V. 60 5791 2017 JRNL REFN ISSN 1520-4804 JRNL PMID 28590130 JRNL DOI 10.1021/ACS.JMEDCHEM.7B00490 REMARK 2 REMARK 2 RESOLUTION. 1.12 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.10.1_2155: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.12 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 40.14 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.370 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 3 NUMBER OF REFLECTIONS : 125548 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.111 REMARK 3 R VALUE (WORKING SET) : 0.111 REMARK 3 FREE R VALUE : 0.119 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 6278 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 40.1635 - 3.4791 0.99 4345 230 0.1369 0.1544 REMARK 3 2 3.4791 - 2.7617 1.00 4146 218 0.1225 0.1218 REMARK 3 3 2.7617 - 2.4126 1.00 4099 216 0.1119 0.1228 REMARK 3 4 2.4126 - 2.1920 1.00 4063 213 0.1046 0.1169 REMARK 3 5 2.1920 - 2.0349 1.00 4048 214 0.1023 0.1085 REMARK 3 6 2.0349 - 1.9150 1.00 4023 211 0.1002 0.1179 REMARK 3 7 1.9150 - 1.8191 1.00 4001 211 0.0986 0.1051 REMARK 3 8 1.8191 - 1.7399 1.00 4022 212 0.0921 0.1008 REMARK 3 9 1.7399 - 1.6729 1.00 3997 210 0.0889 0.0955 REMARK 3 10 1.6729 - 1.6152 1.00 3973 209 0.0839 0.0956 REMARK 3 11 1.6152 - 1.5647 1.00 4002 211 0.0845 0.0860 REMARK 3 12 1.5647 - 1.5199 1.00 3963 208 0.0846 0.1006 REMARK 3 13 1.5199 - 1.4799 1.00 3977 209 0.0879 0.0926 REMARK 3 14 1.4799 - 1.4438 1.00 3971 209 0.0907 0.0990 REMARK 3 15 1.4438 - 1.4110 1.00 3958 209 0.0944 0.0995 REMARK 3 16 1.4110 - 1.3810 1.00 3939 207 0.0978 0.0992 REMARK 3 17 1.3810 - 1.3533 0.99 3928 207 0.1010 0.1198 REMARK 3 18 1.3533 - 1.3278 1.00 3926 207 0.1027 0.1232 REMARK 3 19 1.3278 - 1.3041 0.99 3951 207 0.1042 0.1265 REMARK 3 20 1.3041 - 1.2820 0.99 3946 208 0.1120 0.1094 REMARK 3 21 1.2820 - 1.2613 0.99 3924 207 0.1112 0.1061 REMARK 3 22 1.2613 - 1.2419 0.99 3911 206 0.1162 0.1272 REMARK 3 23 1.2419 - 1.2236 0.99 3896 205 0.1203 0.1272 REMARK 3 24 1.2236 - 1.2064 0.99 3922 206 0.1236 0.1250 REMARK 3 25 1.2064 - 1.1901 0.99 3900 205 0.1288 0.1322 REMARK 3 26 1.1901 - 1.1746 0.99 3891 205 0.1337 0.1404 REMARK 3 27 1.1746 - 1.1599 0.99 3902 205 0.1286 0.1441 REMARK 3 28 1.1599 - 1.1460 0.99 3897 206 0.1382 0.1216 REMARK 3 29 1.1460 - 1.1326 0.99 3870 203 0.1472 0.1506 REMARK 3 30 1.1326 - 1.1199 0.98 3879 204 0.1569 0.1698 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.050 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 8.160 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.008 2603 REMARK 3 ANGLE : 1.041 3565 REMARK 3 CHIRALITY : 0.083 380 REMARK 3 PLANARITY : 0.007 470 REMARK 3 DIHEDRAL : 18.623 887 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5N3V COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 09-FEB-17. REMARK 100 THE DEPOSITION ID IS D_1200003487. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 25-OCT-15 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : BESSY REMARK 200 BEAMLINE : 14.1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.918409 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 125558 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.120 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 200 DATA REDUNDANCY : 5.490 REMARK 200 R MERGE (I) : 0.09000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 11.4700 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.12 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.19 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.6 REMARK 200 DATA REDUNDANCY IN SHELL : 5.40 REMARK 200 R MERGE FOR SHELL (I) : 0.46000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.220 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 8TLN REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 47.62 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.35 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 4 MM TLN, 1.9 M CSCL, 50% DMSO, 50 MM REMARK 280 TRIS-HCL, PH 7.5, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 61 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+5/6 REMARK 290 6555 X-Y,X,Z+1/6 REMARK 290 7555 Y,X,-Z+1/3 REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z+2/3 REMARK 290 10555 -Y,-X,-Z+5/6 REMARK 290 11555 -X+Y,Y,-Z+1/2 REMARK 290 12555 X,X-Y,-Z+1/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 43.38467 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 86.76933 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 65.07700 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 108.46167 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 21.69233 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 43.38467 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 86.76933 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 108.46167 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 65.07700 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 21.69233 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1210 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 12550 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -52.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: E REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH E 767 LIES ON A SPECIAL POSITION. REMARK 375 HOH E 783 LIES ON A SPECIAL POSITION. REMARK 375 HOH E 794 LIES ON A SPECIAL POSITION. REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ILE E 1 CD1 REMARK 470 GLN E 61 CD OE1 NE2 REMARK 470 GLN E 128 CG CD OE1 NE2 REMARK 470 GLN E 158 CD OE1 NE2 REMARK 470 LYS E 182 CG CD CE NZ REMARK 470 LYS E 210 CG CD CE NZ REMARK 470 GLN E 225 CD OE1 NE2 REMARK 470 LYS E 316 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 HG SER E 282 OXT LYS E 316 1.49 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 THR E 26 -59.49 70.00 REMARK 500 SER E 92 -172.63 60.73 REMARK 500 SER E 107 -162.75 61.42 REMARK 500 ASN E 111 53.05 -90.72 REMARK 500 THR E 152 -100.43 -116.04 REMARK 500 ASN E 159 -144.79 52.89 REMARK 500 ASN E 159 -144.79 58.42 REMARK 500 THR E 194 74.93 43.94 REMARK 500 ILE E 232 -60.44 -102.22 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH E 863 DISTANCE = 6.03 ANGSTROMS REMARK 525 HOH E 864 DISTANCE = 6.37 ANGSTROMS REMARK 525 HOH E 865 DISTANCE = 7.36 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA E 402 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP E 57 OD1 REMARK 620 2 ASP E 57 OD2 52.3 REMARK 620 3 ASP E 59 OD1 122.7 70.6 REMARK 620 4 GLN E 61 O 94.7 89.5 88.8 REMARK 620 5 HOH E 585 O 157.5 147.3 77.3 96.0 REMARK 620 6 HOH E 603 O 82.0 133.0 154.6 83.0 79.7 REMARK 620 7 HOH E 766 O 85.5 88.1 88.5 176.9 84.9 100.1 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA E 403 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP E 138 OD2 REMARK 620 2 GLU E 177 OE1 77.9 REMARK 620 3 GLU E 177 OE2 127.2 49.5 REMARK 620 4 ASP E 185 OD1 160.5 121.6 72.3 REMARK 620 5 GLU E 187 O 84.3 146.8 142.2 78.6 REMARK 620 6 GLU E 190 OE1 84.3 127.4 121.1 83.0 77.5 REMARK 620 7 GLU E 190 OE2 98.9 82.5 72.8 84.7 128.3 51.9 REMARK 620 8 HOH E 594 O 97.6 79.5 79.6 87.0 75.3 152.4 152.4 REMARK 620 N 1 2 3 4 5 6 7 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN E 401 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS E 142 NE2 REMARK 620 2 HIS E 146 NE2 102.9 REMARK 620 3 GLU E 166 OE2 125.4 96.4 REMARK 620 4 8L5 E 406 O01 112.5 126.6 94.3 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA E 404 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU E 177 OE2 REMARK 620 2 ASN E 183 O 92.8 REMARK 620 3 ASP E 185 OD2 88.2 89.9 REMARK 620 4 GLU E 190 OE2 83.1 171.1 82.2 REMARK 620 5 HOH E 547 O 88.6 92.7 176.0 95.0 REMARK 620 6 HOH E 565 O 173.5 92.1 96.2 92.7 86.8 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA E 405 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 TYR E 193 O REMARK 620 2 THR E 194 O 75.8 REMARK 620 3 THR E 194 OG1 76.3 71.7 REMARK 620 4 ILE E 197 O 154.9 80.7 104.4 REMARK 620 5 ASP E 200 OD1 123.0 134.3 73.6 80.1 REMARK 620 6 HOH E 607 O 82.0 150.5 121.4 116.7 74.4 REMARK 620 7 HOH E 741 O 88.2 82.8 152.7 80.4 133.4 77.3 REMARK 620 N 1 2 3 4 5 6 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN E 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CA E 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CA E 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CA E 404 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CA E 405 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 8L5 E 406 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MPD E 407 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MPD E 408 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue DMS E 409 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue DMS E 410 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue DMS E 411 DBREF 5N3V E 1 316 UNP P00800 THER_BACTH 233 548 SEQRES 1 E 316 ILE THR GLY THR SER THR VAL GLY VAL GLY ARG GLY VAL SEQRES 2 E 316 LEU GLY ASP GLN LYS ASN ILE ASN THR THR TYR SER THR SEQRES 3 E 316 TYR TYR TYR LEU GLN ASP ASN THR ARG GLY ASN GLY ILE SEQRES 4 E 316 PHE THR TYR ASP ALA LYS TYR ARG THR THR LEU PRO GLY SEQRES 5 E 316 SER LEU TRP ALA ASP ALA ASP ASN GLN PHE PHE ALA SER SEQRES 6 E 316 TYR ASP ALA PRO ALA VAL ASP ALA HIS TYR TYR ALA GLY SEQRES 7 E 316 VAL THR TYR ASP TYR TYR LYS ASN VAL HIS ASN ARG LEU SEQRES 8 E 316 SER TYR ASP GLY ASN ASN ALA ALA ILE ARG SER SER VAL SEQRES 9 E 316 HIS TYR SER GLN GLY TYR ASN ASN ALA PHE TRP ASN GLY SEQRES 10 E 316 SER GLN MET VAL TYR GLY ASP GLY ASP GLY GLN THR PHE SEQRES 11 E 316 ILE PRO LEU SER GLY GLY ILE ASP VAL VAL ALA HIS GLU SEQRES 12 E 316 LEU THR HIS ALA VAL THR ASP TYR THR ALA GLY LEU ILE SEQRES 13 E 316 TYR GLN ASN GLU SER GLY ALA ILE ASN GLU ALA ILE SER SEQRES 14 E 316 ASP ILE PHE GLY THR LEU VAL GLU PHE TYR ALA ASN LYS SEQRES 15 E 316 ASN PRO ASP TRP GLU ILE GLY GLU ASP VAL TYR THR PRO SEQRES 16 E 316 GLY ILE SER GLY ASP SER LEU ARG SER MET SER ASP PRO SEQRES 17 E 316 ALA LYS TYR GLY ASP PRO ASP HIS TYR SER LYS ARG TYR SEQRES 18 E 316 THR GLY THR GLN ASP ASN GLY GLY VAL HIS ILE ASN SER SEQRES 19 E 316 GLY ILE ILE ASN LYS ALA ALA TYR LEU ILE SER GLN GLY SEQRES 20 E 316 GLY THR HIS TYR GLY VAL SER VAL VAL GLY ILE GLY ARG SEQRES 21 E 316 ASP LYS LEU GLY LYS ILE PHE TYR ARG ALA LEU THR GLN SEQRES 22 E 316 TYR LEU THR PRO THR SER ASN PHE SER GLN LEU ARG ALA SEQRES 23 E 316 ALA ALA VAL GLN SER ALA THR ASP LEU TYR GLY SER THR SEQRES 24 E 316 SER GLN GLU VAL ALA SER VAL LYS GLN ALA PHE ASP ALA SEQRES 25 E 316 VAL GLY VAL LYS HET ZN E 401 1 HET CA E 402 1 HET CA E 403 1 HET CA E 404 1 HET CA E 405 1 HET 8L5 E 406 55 HET MPD E 407 8 HET MPD E 408 8 HET DMS E 409 4 HET DMS E 410 4 HET DMS E 411 4 HETNAM ZN ZINC ION HETNAM CA CALCIUM ION HETNAM 8L5 ~{N}-[(2~{S})-1-(AMINOMETHYLAMINO)-4-METHYL-1- HETNAM 2 8L5 OXIDANYLIDENE-PENTAN-2-YL]- HETNAM 3 8L5 (PHENYLMETHOXYCARBONYLAMINOMETHYL)PHOSPHONAMIDIC HETNAM 4 8L5 ACID;HYDROGEN HETNAM MPD (4S)-2-METHYL-2,4-PENTANEDIOL HETNAM DMS DIMETHYL SULFOXIDE FORMUL 2 ZN ZN 2+ FORMUL 3 CA 4(CA 2+) FORMUL 7 8L5 C16 H30 N4 O5 P FORMUL 8 MPD 2(C6 H14 O2) FORMUL 10 DMS 3(C2 H6 O S) FORMUL 13 HOH *365(H2 O) HELIX 1 AA1 ALA E 64 TYR E 66 5 3 HELIX 2 AA2 ASP E 67 ASN E 89 1 23 HELIX 3 AA3 PRO E 132 GLY E 135 5 4 HELIX 4 AA4 GLY E 136 THR E 152 1 17 HELIX 5 AA5 GLN E 158 ASN E 181 1 24 HELIX 6 AA6 ASP E 207 GLY E 212 5 6 HELIX 7 AA7 HIS E 216 ARG E 220 5 5 HELIX 8 AA8 THR E 224 VAL E 230 1 7 HELIX 9 AA9 ASN E 233 GLY E 247 1 15 HELIX 10 AB1 GLY E 259 TYR E 274 1 16 HELIX 11 AB2 ASN E 280 GLY E 297 1 18 HELIX 12 AB3 SER E 300 VAL E 313 1 14 SHEET 1 AA1 5 ALA E 56 ASP E 57 0 SHEET 2 AA1 5 TYR E 28 TYR E 29 -1 N TYR E 28 O ASP E 57 SHEET 3 AA1 5 GLN E 17 TYR E 24 -1 N THR E 23 O TYR E 29 SHEET 4 AA1 5 THR E 4 ARG E 11 -1 N GLY E 8 O ILE E 20 SHEET 5 AA1 5 GLN E 61 PHE E 62 1 O PHE E 62 N VAL E 9 SHEET 1 AA2 3 GLN E 31 ASP E 32 0 SHEET 2 AA2 3 ILE E 39 ASP E 43 -1 O ILE E 39 N ASP E 32 SHEET 3 AA2 3 SER E 53 LEU E 54 -1 O SER E 53 N ASP E 43 SHEET 1 AA3 5 GLN E 31 ASP E 32 0 SHEET 2 AA3 5 ILE E 39 ASP E 43 -1 O ILE E 39 N ASP E 32 SHEET 3 AA3 5 ILE E 100 TYR E 106 1 O ILE E 100 N PHE E 40 SHEET 4 AA3 5 MET E 120 GLY E 123 1 O MET E 120 N ARG E 101 SHEET 5 AA3 5 ALA E 113 TRP E 115 -1 N PHE E 114 O VAL E 121 SHEET 1 AA4 2 GLU E 187 ILE E 188 0 SHEET 2 AA4 2 ARG E 203 SER E 204 -1 O ARG E 203 N ILE E 188 SHEET 1 AA5 2 GLY E 248 HIS E 250 0 SHEET 2 AA5 2 VAL E 253 VAL E 255 -1 O VAL E 255 N GLY E 248 LINK OD1 ASP E 57 CA CA E 402 1555 1555 2.39 LINK OD2 ASP E 57 CA CA E 402 1555 1555 2.57 LINK OD1 ASP E 59 CA CA E 402 1555 1555 2.39 LINK O GLN E 61 CA CA E 402 1555 1555 2.28 LINK OD2 ASP E 138 CA CA E 403 1555 1555 2.38 LINK NE2 HIS E 142 ZN ZN E 401 1555 1555 2.02 LINK NE2 HIS E 146 ZN ZN E 401 1555 1555 2.03 LINK OE2 GLU E 166 ZN ZN E 401 1555 1555 1.98 LINK OE1 GLU E 177 CA CA E 403 1555 1555 2.45 LINK OE2 GLU E 177 CA CA E 403 1555 1555 2.74 LINK OE2 GLU E 177 CA CA E 404 1555 1555 2.39 LINK O ASN E 183 CA CA E 404 1555 1555 2.29 LINK OD1 ASP E 185 CA CA E 403 1555 1555 2.49 LINK OD2 ASP E 185 CA CA E 404 1555 1555 2.34 LINK O GLU E 187 CA CA E 403 1555 1555 2.32 LINK OE1 GLU E 190 CA CA E 403 1555 1555 2.48 LINK OE2 GLU E 190 CA CA E 403 1555 1555 2.51 LINK OE2 GLU E 190 CA CA E 404 1555 1555 2.31 LINK O TYR E 193 CA CA E 405 1555 1555 2.39 LINK O THR E 194 CA CA E 405 1555 1555 2.40 LINK OG1 THR E 194 CA CA E 405 1555 1555 2.36 LINK O ILE E 197 CA CA E 405 1555 1555 2.29 LINK OD1 ASP E 200 CA CA E 405 1555 1555 2.36 LINK ZN ZN E 401 O01 8L5 E 406 1555 1555 1.98 LINK CA CA E 402 O HOH E 585 1555 1555 2.40 LINK CA CA E 402 O HOH E 603 1555 1555 2.41 LINK CA CA E 402 O HOH E 766 1555 1555 2.34 LINK CA CA E 403 O HOH E 594 1555 1555 2.43 LINK CA CA E 404 O HOH E 547 1555 1555 2.36 LINK CA CA E 404 O HOH E 565 1555 1555 2.34 LINK CA CA E 405 O HOH E 607 1555 1555 2.40 LINK CA CA E 405 O HOH E 741 1555 1555 2.39 CISPEP 1 LEU E 50 PRO E 51 0 5.49 SITE 1 AC1 4 HIS E 142 HIS E 146 GLU E 166 8L5 E 406 SITE 1 AC2 6 ASP E 57 ASP E 59 GLN E 61 HOH E 585 SITE 2 AC2 6 HOH E 603 HOH E 766 SITE 1 AC3 6 ASP E 138 GLU E 177 ASP E 185 GLU E 187 SITE 2 AC3 6 GLU E 190 HOH E 594 SITE 1 AC4 6 GLU E 177 ASN E 183 ASP E 185 GLU E 190 SITE 2 AC4 6 HOH E 547 HOH E 565 SITE 1 AC5 6 TYR E 193 THR E 194 ILE E 197 ASP E 200 SITE 2 AC5 6 HOH E 607 HOH E 741 SITE 1 AC6 19 ASN E 112 ALA E 113 ASN E 116 HIS E 142 SITE 2 AC6 19 GLU E 143 HIS E 146 TYR E 157 GLU E 166 SITE 3 AC6 19 LEU E 202 ARG E 203 HIS E 231 ZN E 401 SITE 4 AC6 19 MPD E 407 HOH E 569 HOH E 590 HOH E 592 SITE 5 AC6 19 HOH E 678 HOH E 701 HOH E 734 SITE 1 AC7 6 TYR E 110 ASN E 227 8L5 E 406 HOH E 537 SITE 2 AC7 6 HOH E 702 HOH E 835 SITE 1 AC8 5 GLN E 290 THR E 293 HOH E 633 HOH E 804 SITE 2 AC8 5 HOH E 829 SITE 1 AC9 5 TYR E 66 HIS E 216 SER E 218 HOH E 782 SITE 2 AC9 5 HOH E 849 SITE 1 AD1 4 THR E 2 GLY E 3 GLN E 31 ASN E 33 SITE 1 AD2 4 GLY E 259 ARG E 260 ASP E 261 HOH E 516 CRYST1 92.694 92.694 130.154 90.00 90.00 120.00 P 61 2 2 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010788 0.006229 0.000000 0.00000 SCALE2 0.000000 0.012457 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007683 0.00000