HEADER RNA BINDING PROTEIN 10-FEB-17 5N4K TITLE N-TERMINAL DOMAIN OF A HUMAN CORONAVIRUS NL63 NUCLEOCAPSID PROTEIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: NUCLEOPROTEIN; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: NUCLEOCAPSID PROTEIN,PROTEIN N; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HUMAN CORONAVIRUS NL63; SOURCE 3 ORGANISM_COMMON: HCOV-NL63; SOURCE 4 ORGANISM_TAXID: 277944; SOURCE 5 GENE: N, 6; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS RNA BINDING PROTEIN, NUCLEOCAPSID PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR M.ZDZALIK,B.SZELAZEK,W.KABALA,P.GOLIK,M.BURMISTRZ,D.FLOREK,K.KUS, AUTHOR 2 K.PYRC,G.DUBIN REVDAT 4 17-JAN-24 5N4K 1 REMARK REVDAT 3 24-MAY-17 5N4K 1 JRNL REVDAT 2 05-APR-17 5N4K 1 JRNL REVDAT 1 22-FEB-17 5N4K 0 JRNL AUTH B.SZELAZEK,W.KABALA,K.KUS,M.ZDZALIK,A.TWARDA-CLAPA,P.GOLIK, JRNL AUTH 2 M.BURMISTRZ,D.FLOREK,B.WLADYKA,K.PYRC,G.DUBIN JRNL TITL STRUCTURAL CHARACTERIZATION OF HUMAN CORONAVIRUS NL63 N JRNL TITL 2 PROTEIN. JRNL REF J. VIROL. V. 91 2017 JRNL REFN ESSN 1098-5514 JRNL PMID 28331093 JRNL DOI 10.1128/JVI.02503-16 REMARK 2 REMARK 2 RESOLUTION. 1.49 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0073 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.49 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 41.65 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.1 REMARK 3 NUMBER OF REFLECTIONS : 40174 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.153 REMARK 3 R VALUE (WORKING SET) : 0.151 REMARK 3 FREE R VALUE : 0.197 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 2132 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.49 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.53 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2968 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.43 REMARK 3 BIN R VALUE (WORKING SET) : 0.1690 REMARK 3 BIN FREE R VALUE SET COUNT : 153 REMARK 3 BIN FREE R VALUE : 0.1980 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2063 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 70 REMARK 3 SOLVENT ATOMS : 356 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 21.82 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.02000 REMARK 3 B22 (A**2) : 0.02000 REMARK 3 B33 (A**2) : -0.07000 REMARK 3 B12 (A**2) : 0.01000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.069 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.077 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.044 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 1.112 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.972 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.951 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2348 ; 0.024 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 2253 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3219 ; 2.533 ; 2.008 REMARK 3 BOND ANGLES OTHERS (DEGREES): 5225 ; 1.083 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 303 ; 8.949 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 103 ;32.170 ;22.816 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 417 ;15.684 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 22 ;23.638 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 341 ; 0.152 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2588 ; 0.012 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 530 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1087 ; 2.425 ; 1.882 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1086 ; 2.421 ; 1.878 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1365 ; 3.852 ; 2.790 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 1366 ; 3.852 ; 2.795 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1261 ; 3.232 ; 2.233 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 1201 ; 3.145 ; 2.175 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 1742 ; 4.674 ; 3.111 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 2914 ; 7.575 ;17.109 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 2654 ; 7.303 ;15.787 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 5N4K COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 10-FEB-17. REMARK 100 THE DEPOSITION ID IS D_1200003505. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 26-NOV-14 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : BESSY REMARK 200 BEAMLINE : 14.1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.92 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : IMOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 42346 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.490 REMARK 200 RESOLUTION RANGE LOW (A) : 50.610 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.1 REMARK 200 DATA REDUNDANCY : 2.900 REMARK 200 R MERGE (I) : 0.03400 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 16.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.49 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.53 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.5 REMARK 200 DATA REDUNDANCY IN SHELL : 2.90 REMARK 200 R MERGE FOR SHELL (I) : 0.09500 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 7.400 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 2BXX REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 36.86 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.95 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: AMMONIUM SULPHATE, TRIS, PH 8.5, VAPOR REMARK 280 DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 32 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 67.48000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 33.74000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4930 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 14660 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -167.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 HIS A -9 REMARK 465 HIS A -8 REMARK 465 HIS A -7 REMARK 465 HIS A -6 REMARK 465 SER A -5 REMARK 465 GLY A -4 REMARK 465 ASP A -3 REMARK 465 ASP A -2 REMARK 465 ASP A -1 REMARK 465 ASP A 0 REMARK 465 LYS A 1 REMARK 465 ALA A 2 REMARK 465 SER A 3 REMARK 465 VAL A 4 REMARK 465 ASN A 5 REMARK 465 TRP A 6 REMARK 465 ALA A 7 REMARK 465 ASP A 8 REMARK 465 GLY A 67 REMARK 465 GLN A 68 REMARK 465 HIS B -9 REMARK 465 HIS B -8 REMARK 465 HIS B -7 REMARK 465 HIS B -6 REMARK 465 SER B -5 REMARK 465 GLY B -4 REMARK 465 ASP B -3 REMARK 465 ASP B -2 REMARK 465 ASP B -1 REMARK 465 ASP B 0 REMARK 465 LYS B 1 REMARK 465 ALA B 2 REMARK 465 SER B 3 REMARK 465 VAL B 4 REMARK 465 ASN B 5 REMARK 465 TRP B 6 REMARK 465 ALA B 7 REMARK 465 ASP B 8 REMARK 465 ASP B 9 REMARK 465 GLY B 67 REMARK 465 GLN B 68 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ASP A 9 CG OD1 OD2 REMARK 470 ARG A 10 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 65 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 66 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 117 CD CE NZ REMARK 470 LYS A 121 CD CE NZ REMARK 470 TRP B 62 CG CD1 CD2 NE1 CE2 CE3 CZ2 REMARK 470 TRP B 62 CZ3 CH2 REMARK 470 ARG B 65 CD NE CZ NH1 NH2 REMARK 470 ARG B 66 CG CD NE CZ NH1 NH2 REMARK 470 ARG B 69 CG CD NE CZ NH1 NH2 REMARK 470 LYS B 117 CE NZ REMARK 470 LYS B 121 CD CE NZ REMARK 470 GLU B 139 CG CD OE1 OE2 REMARK 470 PHE B 140 CD1 CD2 CE1 CE2 CZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O2 SO4 A 408 O HOH A 504 1.50 REMARK 500 OG SER B 29 O HOH B 503 1.98 REMARK 500 O4 SO4 B 406 O HOH B 504 2.13 REMARK 500 ND2 ASN B 40 O3 SO4 B 406 2.18 REMARK 500 O HOH B 614 O HOH B 653 2.19 REMARK 500 O HOH B 615 O HOH B 665 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 TYR B 79 CZ TYR B 79 OH 0.110 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP A 50 CB - CG - OD2 ANGL. DEV. = -6.6 DEGREES REMARK 500 ARG A 61 NE - CZ - NH1 ANGL. DEV. = 7.6 DEGREES REMARK 500 ARG A 61 NE - CZ - NH2 ANGL. DEV. = -3.5 DEGREES REMARK 500 ARG A 92 NE - CZ - NH2 ANGL. DEV. = -7.5 DEGREES REMARK 500 MET B 23 CG - SD - CE ANGL. DEV. = 9.9 DEGREES REMARK 500 ASP B 30 C - N - CA ANGL. DEV. = 21.4 DEGREES REMARK 500 ARG B 61 NE - CZ - NH1 ANGL. DEV. = 7.3 DEGREES REMARK 500 ARG B 61 NE - CZ - NH2 ANGL. DEV. = -3.7 DEGREES REMARK 500 ARG B 92 NE - CZ - NH2 ANGL. DEV. = -6.4 DEGREES REMARK 500 ARG B 116 NE - CZ - NH2 ANGL. DEV. = 3.6 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 29 -164.03 46.31 REMARK 500 SER B 29 -154.28 165.87 REMARK 500 SER B 29 -142.89 -74.20 REMARK 500 ASP B 30 -54.59 134.24 REMARK 500 ASP B 30 -54.59 126.11 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 ASP A 9 ARG A 10 148.13 REMARK 500 SER B 29 ASP B 30 -65.93 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: MAIN CHAIN PLANARITY REMARK 500 REMARK 500 THE FOLLOWING RESIDUES HAVE A PSEUDO PLANARITY REMARK 500 TORSION ANGLE, C(I) - CA(I) - N(I+1) - O(I), GREATER REMARK 500 10.0 DEGREES. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 500 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 500 I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI ANGLE REMARK 500 SER B 29 11.80 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 404 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 405 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 406 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 407 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 408 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 B 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 B 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 B 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 B 404 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 B 405 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 B 406 DBREF 5N4K A 2 140 UNP Q6Q1R8 NCAP_CVHNL 2 140 DBREF 5N4K B 2 140 UNP Q6Q1R8 NCAP_CVHNL 2 140 SEQADV 5N4K HIS A -9 UNP Q6Q1R8 EXPRESSION TAG SEQADV 5N4K HIS A -8 UNP Q6Q1R8 EXPRESSION TAG SEQADV 5N4K HIS A -7 UNP Q6Q1R8 EXPRESSION TAG SEQADV 5N4K HIS A -6 UNP Q6Q1R8 EXPRESSION TAG SEQADV 5N4K SER A -5 UNP Q6Q1R8 EXPRESSION TAG SEQADV 5N4K GLY A -4 UNP Q6Q1R8 EXPRESSION TAG SEQADV 5N4K ASP A -3 UNP Q6Q1R8 EXPRESSION TAG SEQADV 5N4K ASP A -2 UNP Q6Q1R8 EXPRESSION TAG SEQADV 5N4K ASP A -1 UNP Q6Q1R8 EXPRESSION TAG SEQADV 5N4K ASP A 0 UNP Q6Q1R8 EXPRESSION TAG SEQADV 5N4K LYS A 1 UNP Q6Q1R8 EXPRESSION TAG SEQADV 5N4K HIS B -9 UNP Q6Q1R8 EXPRESSION TAG SEQADV 5N4K HIS B -8 UNP Q6Q1R8 EXPRESSION TAG SEQADV 5N4K HIS B -7 UNP Q6Q1R8 EXPRESSION TAG SEQADV 5N4K HIS B -6 UNP Q6Q1R8 EXPRESSION TAG SEQADV 5N4K SER B -5 UNP Q6Q1R8 EXPRESSION TAG SEQADV 5N4K GLY B -4 UNP Q6Q1R8 EXPRESSION TAG SEQADV 5N4K ASP B -3 UNP Q6Q1R8 EXPRESSION TAG SEQADV 5N4K ASP B -2 UNP Q6Q1R8 EXPRESSION TAG SEQADV 5N4K ASP B -1 UNP Q6Q1R8 EXPRESSION TAG SEQADV 5N4K ASP B 0 UNP Q6Q1R8 EXPRESSION TAG SEQADV 5N4K LYS B 1 UNP Q6Q1R8 EXPRESSION TAG SEQRES 1 A 150 HIS HIS HIS HIS SER GLY ASP ASP ASP ASP LYS ALA SER SEQRES 2 A 150 VAL ASN TRP ALA ASP ASP ARG ALA ALA ARG LYS LYS PHE SEQRES 3 A 150 PRO PRO PRO SER PHE TYR MET PRO LEU LEU VAL SER SER SEQRES 4 A 150 ASP LYS ALA PRO TYR ARG VAL ILE PRO ARG ASN LEU VAL SEQRES 5 A 150 PRO ILE GLY LYS GLY ASN LYS ASP GLU GLN ILE GLY TYR SEQRES 6 A 150 TRP ASN VAL GLN GLU ARG TRP ARG MET ARG ARG GLY GLN SEQRES 7 A 150 ARG VAL ASP LEU PRO PRO LYS VAL HIS PHE TYR TYR LEU SEQRES 8 A 150 GLY THR GLY PRO HIS LYS ASP LEU LYS PHE ARG GLN ARG SEQRES 9 A 150 SER ASP GLY VAL VAL TRP VAL ALA LYS GLU GLY ALA LYS SEQRES 10 A 150 THR VAL ASN THR SER LEU GLY ASN ARG LYS ARG ASN GLN SEQRES 11 A 150 LYS PRO LEU GLU PRO LYS PHE SER ILE ALA LEU PRO PRO SEQRES 12 A 150 GLU LEU SER VAL VAL GLU PHE SEQRES 1 B 150 HIS HIS HIS HIS SER GLY ASP ASP ASP ASP LYS ALA SER SEQRES 2 B 150 VAL ASN TRP ALA ASP ASP ARG ALA ALA ARG LYS LYS PHE SEQRES 3 B 150 PRO PRO PRO SER PHE TYR MET PRO LEU LEU VAL SER SER SEQRES 4 B 150 ASP LYS ALA PRO TYR ARG VAL ILE PRO ARG ASN LEU VAL SEQRES 5 B 150 PRO ILE GLY LYS GLY ASN LYS ASP GLU GLN ILE GLY TYR SEQRES 6 B 150 TRP ASN VAL GLN GLU ARG TRP ARG MET ARG ARG GLY GLN SEQRES 7 B 150 ARG VAL ASP LEU PRO PRO LYS VAL HIS PHE TYR TYR LEU SEQRES 8 B 150 GLY THR GLY PRO HIS LYS ASP LEU LYS PHE ARG GLN ARG SEQRES 9 B 150 SER ASP GLY VAL VAL TRP VAL ALA LYS GLU GLY ALA LYS SEQRES 10 B 150 THR VAL ASN THR SER LEU GLY ASN ARG LYS ARG ASN GLN SEQRES 11 B 150 LYS PRO LEU GLU PRO LYS PHE SER ILE ALA LEU PRO PRO SEQRES 12 B 150 GLU LEU SER VAL VAL GLU PHE HET SO4 A 401 5 HET SO4 A 402 5 HET SO4 A 403 5 HET SO4 A 404 5 HET SO4 A 405 5 HET SO4 A 406 5 HET SO4 A 407 10 HET SO4 A 408 5 HET SO4 B 401 5 HET SO4 B 402 5 HET SO4 B 403 5 HET SO4 B 404 5 HET SO4 B 405 5 HET SO4 B 406 5 HETNAM SO4 SULFATE ION FORMUL 3 SO4 14(O4 S 2-) FORMUL 17 HOH *356(H2 O) HELIX 1 AA1 ALA A 32 ILE A 37 1 6 HELIX 2 AA2 ASN A 48 GLU A 51 5 4 HELIX 3 AA3 ALA B 32 ILE B 37 1 6 HELIX 4 AA4 ASN B 48 GLU B 51 5 4 SHEET 1 AA1 5 VAL A 98 ALA A 102 0 SHEET 2 AA1 5 ILE A 53 ARG A 63 -1 N TRP A 56 O VAL A 99 SHEET 3 AA1 5 VAL A 70 TYR A 80 -1 O VAL A 70 N ARG A 63 SHEET 4 AA1 5 LEU A 25 VAL A 27 -1 N VAL A 27 O PRO A 74 SHEET 5 AA1 5 LEU A 135 VAL A 137 -1 O SER A 136 N LEU A 26 SHEET 1 AA2 5 VAL B 98 ALA B 102 0 SHEET 2 AA2 5 ILE B 53 ARG B 63 -1 N TRP B 56 O VAL B 99 SHEET 3 AA2 5 VAL B 70 TYR B 80 -1 O VAL B 70 N ARG B 63 SHEET 4 AA2 5 LEU B 25 VAL B 27 -1 N VAL B 27 O PRO B 74 SHEET 5 AA2 5 LEU B 135 VAL B 137 -1 O SER B 136 N LEU B 26 CISPEP 1 SER B 29 ASP B 30 0 2.63 SITE 1 AC1 6 LYS A 14 LYS A 117 ARG A 118 HOH A 535 SITE 2 AC1 6 HOH A 556 HOH A 651 SITE 1 AC2 7 ARG A 61 ARG A 63 LEU A 72 HOH A 530 SITE 2 AC2 7 HOH A 584 HOH A 634 SER B 128 SITE 1 AC3 2 ARG A 116 HOH A 611 SITE 1 AC4 5 GLN A 59 ARG A 61 LYS A 75 HOH A 526 SITE 2 AC4 5 HOH A 626 SITE 1 AC5 9 ARG A 39 HOH A 508 HOH A 513 HOH A 542 SITE 2 AC5 9 HOH A 583 HOH A 604 HOH A 646 GLN B 93 SITE 3 AC5 9 ARG B 94 SITE 1 AC6 5 ARG A 13 TYR A 34 ARG A 35 ARG B 13 SITE 2 AC6 5 TYR B 34 SITE 1 AC7 11 ARG A 13 ARG A 92 TRP A 100 HOH A 534 SITE 2 AC7 11 HOH A 536 HOH A 587 HOH A 588 HOH A 603 SITE 3 AC7 11 ARG B 13 ARG B 92 TRP B 100 SITE 1 AC8 8 ARG A 39 ASN A 40 LYS A 103 GLU A 104 SITE 2 AC8 8 HOH A 501 HOH A 504 HOH A 613 HOH A 641 SITE 1 AC9 4 TRP A 62 ARG B 116 HOH B 533 HOH B 585 SITE 1 AD1 6 LYS B 14 LYS B 117 ARG B 118 HOH B 512 SITE 2 AD1 6 HOH B 590 HOH B 593 SITE 1 AD2 7 SER A 128 ARG B 61 ARG B 63 LEU B 72 SITE 2 AD2 7 HOH B 546 HOH B 595 HOH B 621 SITE 1 AD3 6 TRP A 62 GLN B 59 ARG B 61 LYS B 75 SITE 2 AD3 6 HOH B 565 HOH B 614 SITE 1 AD4 7 GLN A 93 ARG A 94 ARG B 10 ARG B 39 SITE 2 AD4 7 HOH B 506 HOH B 557 HOH B 576 SITE 1 AD5 9 LYS A 90 ARG B 39 ASN B 40 ALA B 102 SITE 2 AD5 9 LYS B 103 GLU B 104 HOH B 502 HOH B 504 SITE 3 AD5 9 HOH B 513 CRYST1 48.090 48.090 101.220 90.00 90.00 120.00 P 32 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.020794 0.012006 0.000000 0.00000 SCALE2 0.000000 0.024011 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009879 0.00000