HEADER OXIDOREDUCTASE 13-FEB-17 5N56 TITLE STAPHYLOCOCCUS AUREUS MN-DEPENDENT SUPEROXIDE DISMUTASE SODA COMPND MOL_ID: 1; COMPND 2 MOLECULE: SUPEROXIDE DISMUTASE [MN/FE] 1; COMPND 3 CHAIN: A, B; COMPND 4 EC: 1.15.1.1; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: STAPHYLOCOCCUS AUREUS (STRAIN BOVINE RF122 / SOURCE 3 ET3-1); SOURCE 4 ORGANISM_TAXID: 273036; SOURCE 5 STRAIN: BOVINE RF122 / ET3-1; SOURCE 6 GENE: SODA, SAB1425C; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS SUPEROXIDE DISMUTASE, MN-DEPENDENT, STAPHYLOCOCCUS AUREUS, KEYWDS 2 OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR A.BARWINSKA-SENDRA,A.BASLE,K.WALDRON REVDAT 3 17-JAN-24 5N56 1 LINK REVDAT 2 21-MAR-18 5N56 1 JRNL REVDAT 1 07-MAR-18 5N56 0 JRNL AUTH A.BARWINSKA-SENDRA,A.BASLE,K.J.WALDRON,S.UN JRNL TITL A CHARGE POLARIZATION MODEL FOR THE METAL-SPECIFIC ACTIVITY JRNL TITL 2 OF SUPEROXIDE DISMUTASES. JRNL REF PHYS CHEM CHEM PHYS V. 20 2363 2018 JRNL REFN ESSN 1463-9084 JRNL PMID 29308487 JRNL DOI 10.1039/C7CP06829H REMARK 2 REMARK 2 RESOLUTION. 2.07 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0155 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.07 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 43.30 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 91.8 REMARK 3 NUMBER OF REFLECTIONS : 20774 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.154 REMARK 3 R VALUE (WORKING SET) : 0.150 REMARK 3 FREE R VALUE : 0.239 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.900 REMARK 3 FREE R VALUE TEST SET COUNT : 1070 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.07 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.12 REMARK 3 REFLECTION IN BIN (WORKING SET) : 879 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 51.70 REMARK 3 BIN R VALUE (WORKING SET) : 0.2540 REMARK 3 BIN FREE R VALUE SET COUNT : 34 REMARK 3 BIN FREE R VALUE : 0.3620 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3202 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 2 REMARK 3 SOLVENT ATOMS : 140 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 38.48 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 3.68000 REMARK 3 B22 (A**2) : -1.69000 REMARK 3 B33 (A**2) : -2.18000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.94000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.207 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.183 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 16.220 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.972 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.933 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3292 ; 0.014 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 3022 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4480 ; 1.563 ; 1.923 REMARK 3 BOND ANGLES OTHERS (DEGREES): 6970 ; 1.018 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 394 ; 5.885 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 172 ;40.111 ;25.581 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 536 ;13.872 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 8 ; 9.038 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 474 ; 0.099 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3768 ; 0.007 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 776 ; 0.002 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1582 ; 4.254 ; 3.208 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1581 ; 4.252 ; 3.207 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1974 ; 5.327 ; 4.816 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 1975 ; 5.329 ; 4.817 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1710 ; 4.405 ; 3.412 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 1711 ; 4.404 ; 3.413 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 2507 ; 5.280 ; 4.995 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 3818 ; 5.860 ;37.082 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 3803 ; 5.849 ;37.013 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): 6314 ; 2.874 ; 3.000 REMARK 3 SPHERICITY; FREE ATOMS (A**2): 88 ;44.011 ; 5.000 REMARK 3 SPHERICITY; BONDED ATOMS (A**2): 6278 ;26.596 ; 5.000 REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 2 A 198 REMARK 3 ORIGIN FOR THE GROUP (A): -15.7780 -1.1000 -1.8070 REMARK 3 T TENSOR REMARK 3 T11: 0.0614 T22: 0.1657 REMARK 3 T33: 0.1536 T12: 0.0018 REMARK 3 T13: -0.0657 T23: 0.0005 REMARK 3 L TENSOR REMARK 3 L11: 0.2202 L22: 0.0768 REMARK 3 L33: 0.2417 L12: -0.0060 REMARK 3 L13: 0.0582 L23: -0.0598 REMARK 3 S TENSOR REMARK 3 S11: 0.0023 S12: 0.0477 S13: -0.0027 REMARK 3 S21: 0.0092 S22: -0.0020 S23: -0.0023 REMARK 3 S31: 0.0092 S32: -0.0043 S33: -0.0003 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 5N56 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 13-FEB-17. REMARK 100 THE DEPOSITION ID IS D_1200003530. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 24-APR-14 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I04 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.881 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 21845 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.070 REMARK 200 RESOLUTION RANGE LOW (A) : 43.300 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 91.6 REMARK 200 DATA REDUNDANCY : 3.500 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 9.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.07 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.12 REMARK 200 COMPLETENESS FOR SHELL (%) : 51.7 REMARK 200 DATA REDUNDANCY IN SHELL : 1.60 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 1.500 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 1IDS REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 42.96 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.16 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2 M MGCL2, 30 % PEG 4000, 0.1 M TRIS REMARK 280 PH 8.5, VAPOR DIFFUSION, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 34.17800 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1760 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 17400 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -12.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 MET B 1 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLU A 100 CD GLU A 100 OE2 0.072 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP A 147 CB - CG - OD1 ANGL. DEV. = 6.0 DEGREES REMARK 500 ASP A 161 CB - CG - OD2 ANGL. DEV. = -6.6 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG A 30 -60.71 -109.45 REMARK 500 ASN A 91 57.65 -141.64 REMARK 500 ASN A 145 -121.06 54.83 REMARK 500 TYR A 167 -7.84 -140.49 REMARK 500 GLN A 172 -123.35 46.31 REMARK 500 ASN B 59 40.54 -108.54 REMARK 500 ASN B 145 -114.74 54.51 REMARK 500 GLN B 172 -129.72 52.01 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN A 201 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 27 NE2 REMARK 620 2 HIS A 81 NE2 95.1 REMARK 620 3 ASP A 161 OD2 80.2 116.5 REMARK 620 4 HIS A 165 NE2 89.6 131.1 112.3 REMARK 620 5 HOH A 320 O 167.6 95.0 88.8 89.3 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN B 201 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS B 27 NE2 REMARK 620 2 HIS B 81 NE2 89.8 REMARK 620 3 ASP B 161 OD2 83.3 107.6 REMARK 620 4 HIS B 165 NE2 90.3 133.2 118.9 REMARK 620 5 HOH B 336 O 171.1 92.7 87.7 94.2 REMARK 620 N 1 2 3 4 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MN A 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MN B 201 DBREF 5N56 A 1 199 UNP Q2YT26 SODM1_STAAB 1 199 DBREF 5N56 B 1 199 UNP Q2YT26 SODM1_STAAB 1 199 SEQRES 1 A 199 MET ALA PHE GLU LEU PRO LYS LEU PRO TYR ALA PHE ASP SEQRES 2 A 199 ALA LEU GLU PRO HIS PHE ASP LYS GLU THR MET GLU ILE SEQRES 3 A 199 HIS HIS ASP ARG HIS HIS ASN THR TYR VAL THR LYS LEU SEQRES 4 A 199 ASN ALA ALA VAL GLU GLY THR ASP LEU GLU SER LYS SER SEQRES 5 A 199 ILE GLU GLU ILE VAL ALA ASN LEU ASP SER VAL PRO ALA SEQRES 6 A 199 ASN ILE GLN THR ALA VAL ARG ASN ASN GLY GLY GLY HIS SEQRES 7 A 199 LEU ASN HIS SER LEU PHE TRP GLU LEU LEU SER PRO ASN SEQRES 8 A 199 SER GLU GLU LYS GLY THR VAL VAL GLU LYS ILE LYS GLU SEQRES 9 A 199 GLN TRP GLY SER LEU GLU GLU PHE LYS LYS GLU PHE ALA SEQRES 10 A 199 ASP LYS ALA ALA ALA ARG PHE GLY SER GLY TRP ALA TRP SEQRES 11 A 199 LEU VAL VAL ASN ASN GLY GLN LEU GLU ILE VAL THR THR SEQRES 12 A 199 PRO ASN GLN ASP ASN PRO LEU THR GLU GLY LYS THR PRO SEQRES 13 A 199 ILE LEU GLY LEU ASP VAL TRP GLU HIS ALA TYR TYR LEU SEQRES 14 A 199 LYS TYR GLN ASN LYS ARG PRO ASP TYR ILE GLY ALA PHE SEQRES 15 A 199 TRP ASN VAL VAL ASN TRP GLU LYS VAL ASP GLU LEU TYR SEQRES 16 A 199 ASN ALA THR LYS SEQRES 1 B 199 MET ALA PHE GLU LEU PRO LYS LEU PRO TYR ALA PHE ASP SEQRES 2 B 199 ALA LEU GLU PRO HIS PHE ASP LYS GLU THR MET GLU ILE SEQRES 3 B 199 HIS HIS ASP ARG HIS HIS ASN THR TYR VAL THR LYS LEU SEQRES 4 B 199 ASN ALA ALA VAL GLU GLY THR ASP LEU GLU SER LYS SER SEQRES 5 B 199 ILE GLU GLU ILE VAL ALA ASN LEU ASP SER VAL PRO ALA SEQRES 6 B 199 ASN ILE GLN THR ALA VAL ARG ASN ASN GLY GLY GLY HIS SEQRES 7 B 199 LEU ASN HIS SER LEU PHE TRP GLU LEU LEU SER PRO ASN SEQRES 8 B 199 SER GLU GLU LYS GLY THR VAL VAL GLU LYS ILE LYS GLU SEQRES 9 B 199 GLN TRP GLY SER LEU GLU GLU PHE LYS LYS GLU PHE ALA SEQRES 10 B 199 ASP LYS ALA ALA ALA ARG PHE GLY SER GLY TRP ALA TRP SEQRES 11 B 199 LEU VAL VAL ASN ASN GLY GLN LEU GLU ILE VAL THR THR SEQRES 12 B 199 PRO ASN GLN ASP ASN PRO LEU THR GLU GLY LYS THR PRO SEQRES 13 B 199 ILE LEU GLY LEU ASP VAL TRP GLU HIS ALA TYR TYR LEU SEQRES 14 B 199 LYS TYR GLN ASN LYS ARG PRO ASP TYR ILE GLY ALA PHE SEQRES 15 B 199 TRP ASN VAL VAL ASN TRP GLU LYS VAL ASP GLU LEU TYR SEQRES 16 B 199 ASN ALA THR LYS HET MN A 201 1 HET MN B 201 1 HETNAM MN MANGANESE (II) ION FORMUL 3 MN 2(MN 2+) FORMUL 5 HOH *140(H2 O) HELIX 1 AA1 ASP A 20 ARG A 30 1 11 HELIX 2 AA2 ARG A 30 GLU A 44 1 15 HELIX 3 AA3 SER A 52 ASN A 59 1 8 HELIX 4 AA4 LEU A 60 VAL A 63 5 4 HELIX 5 AA5 PRO A 64 LEU A 87 1 24 HELIX 6 AA6 GLY A 96 GLY A 107 1 12 HELIX 7 AA7 SER A 108 ALA A 122 1 15 HELIX 8 AA8 ASN A 148 GLY A 153 5 6 HELIX 9 AA9 TRP A 163 ALA A 166 5 4 HELIX 10 AB1 TYR A 167 GLN A 172 1 6 HELIX 11 AB2 LYS A 174 TRP A 183 1 10 HELIX 12 AB3 ASN A 184 VAL A 186 5 3 HELIX 13 AB4 ASN A 187 ALA A 197 1 11 HELIX 14 AB5 ASP B 20 ARG B 30 1 11 HELIX 15 AB6 ARG B 30 GLU B 44 1 15 HELIX 16 AB7 THR B 46 LYS B 51 5 6 HELIX 17 AB8 SER B 52 ASN B 59 1 8 HELIX 18 AB9 LEU B 60 VAL B 63 5 4 HELIX 19 AC1 ILE B 67 LEU B 87 1 21 HELIX 20 AC2 GLY B 96 GLY B 107 1 12 HELIX 21 AC3 SER B 108 ARG B 123 1 16 HELIX 22 AC4 ASN B 148 GLY B 153 5 6 HELIX 23 AC5 TRP B 163 ALA B 166 5 4 HELIX 24 AC6 TYR B 167 GLN B 172 1 6 HELIX 25 AC7 LYS B 174 TRP B 183 1 10 HELIX 26 AC8 ASN B 184 VAL B 186 5 3 HELIX 27 AC9 ASN B 187 THR B 198 1 12 SHEET 1 AA1 3 GLN A 137 PRO A 144 0 SHEET 2 AA1 3 GLY A 127 ASN A 134 -1 N ASN A 134 O GLN A 137 SHEET 3 AA1 3 THR A 155 ASP A 161 -1 O LEU A 158 N LEU A 131 SHEET 1 AA2 3 GLN B 137 PRO B 144 0 SHEET 2 AA2 3 GLY B 127 ASN B 134 -1 N TRP B 130 O VAL B 141 SHEET 3 AA2 3 THR B 155 ASP B 161 -1 O ILE B 157 N LEU B 131 LINK NE2 HIS A 27 MN MN A 201 1555 1555 2.36 LINK NE2 HIS A 81 MN MN A 201 1555 1555 2.13 LINK OD2 ASP A 161 MN MN A 201 1555 1555 2.12 LINK NE2 HIS A 165 MN MN A 201 1555 1555 2.41 LINK MN MN A 201 O HOH A 320 1555 1555 2.22 LINK NE2 HIS B 27 MN MN B 201 1555 1555 2.38 LINK NE2 HIS B 81 MN MN B 201 1555 1555 2.17 LINK OD2 ASP B 161 MN MN B 201 1555 1555 2.06 LINK NE2 HIS B 165 MN MN B 201 1555 1555 2.20 LINK MN MN B 201 O HOH B 336 1555 1555 2.22 CISPEP 1 GLU A 16 PRO A 17 0 13.06 CISPEP 2 GLU B 16 PRO B 17 0 10.29 SITE 1 AC1 5 HIS A 27 HIS A 81 ASP A 161 HIS A 165 SITE 2 AC1 5 HOH A 320 SITE 1 AC2 5 HIS B 27 HIS B 81 ASP B 161 HIS B 165 SITE 2 AC2 5 HOH B 336 CRYST1 51.275 68.356 56.724 90.00 99.45 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.019503 0.000000 0.003247 0.00000 SCALE2 0.000000 0.014629 0.000000 0.00000 SCALE3 0.000000 0.000000 0.017872 0.00000