HEADER HYDROLASE 14-FEB-17 5N5G TITLE CRYSTAL STRUCTURE OF DI-ZINC METALLO-BETA-LACTAMASE VIM-1 COMPND MOL_ID: 1; COMPND 2 MOLECULE: BETA-LACTAMASE VIM-1; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: CLASS B CARBAPENEMASE VIM-1,METALLO-BETA-LACTAMASE,METALLO- COMPND 5 BETA-LACTAMASE VIM-1,METALLOBETA-LACTAMASE,VIM-1,VIM-1 METALLO-BETA COMPND 6 LACTAMASE,VIM-1 METALLO-BETA-LACTAMASE,VIM-1 PROTEIN; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PSEUDOMONAS AERUGINOSA; SOURCE 3 ORGANISM_TAXID: 287; SOURCE 4 GENE: BLAVIM, BLAVIM-1; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: ROSETTA2; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: POPINE KEYWDS LACTAMASE, CARBAPENEMASE, METALLO, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR R.SALIMRAJ,P.HINCHLIFFE,J.SPENCER REVDAT 3 17-JAN-24 5N5G 1 LINK REVDAT 2 27-FEB-19 5N5G 1 JRNL REVDAT 1 07-MAR-18 5N5G 0 JRNL AUTH R.SALIMRAJ,P.HINCHLIFFE,M.KOSMOPOULOU,J.M.TYRRELL,J.BREM, JRNL AUTH 2 S.S.VAN BERKEL,A.VERMA,R.J.OWENS,M.A.MCDONOUGH,T.R.WALSH, JRNL AUTH 3 C.J.SCHOFIELD,J.SPENCER JRNL TITL CRYSTAL STRUCTURES OF VIM-1 COMPLEXES EXPLAIN ACTIVE SITE JRNL TITL 2 HETEROGENEITY IN VIM-CLASS METALLO-BETA-LACTAMASES. JRNL REF FEBS J. V. 286 169 2019 JRNL REFN ISSN 1742-4658 JRNL PMID 30430727 JRNL DOI 10.1111/FEBS.14695 REMARK 2 REMARK 2 RESOLUTION. 1.29 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.10.1_2155: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.29 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 34.25 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.360 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.3 REMARK 3 NUMBER OF REFLECTIONS : 53159 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.145 REMARK 3 R VALUE (WORKING SET) : 0.145 REMARK 3 FREE R VALUE : 0.156 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.710 REMARK 3 FREE R VALUE TEST SET COUNT : 2502 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 34.2650 - 3.3850 0.98 2823 140 0.1395 0.1489 REMARK 3 2 3.3850 - 2.6871 0.99 2803 155 0.1405 0.1668 REMARK 3 3 2.6871 - 2.3475 0.99 2798 156 0.1318 0.1348 REMARK 3 4 2.3475 - 2.1329 1.00 2842 127 0.1331 0.1443 REMARK 3 5 2.1329 - 1.9801 1.00 2833 146 0.1298 0.1259 REMARK 3 6 1.9801 - 1.8633 0.99 2805 169 0.1359 0.1513 REMARK 3 7 1.8633 - 1.7700 0.99 2827 120 0.1379 0.1294 REMARK 3 8 1.7700 - 1.6930 0.99 2809 137 0.1403 0.1537 REMARK 3 9 1.6930 - 1.6278 0.99 2799 154 0.1464 0.1599 REMARK 3 10 1.6278 - 1.5716 0.99 2825 128 0.1515 0.1779 REMARK 3 11 1.5716 - 1.5225 0.99 2816 134 0.1571 0.1462 REMARK 3 12 1.5225 - 1.4790 1.00 2784 144 0.1560 0.1705 REMARK 3 13 1.4790 - 1.4400 0.99 2847 123 0.1582 0.1986 REMARK 3 14 1.4400 - 1.4049 1.00 2838 118 0.1702 0.1736 REMARK 3 15 1.4049 - 1.3730 1.00 2842 118 0.1741 0.1936 REMARK 3 16 1.3730 - 1.3437 0.99 2786 145 0.1787 0.2114 REMARK 3 17 1.3437 - 1.3169 1.00 2810 156 0.1934 0.2252 REMARK 3 18 1.3169 - 1.2920 0.99 2770 132 0.2230 0.2649 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.120 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 15.040 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.009 1806 REMARK 3 ANGLE : 1.140 2476 REMARK 3 CHIRALITY : 0.078 282 REMARK 3 PLANARITY : 0.006 329 REMARK 3 DIHEDRAL : 21.359 640 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 8 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 27 THROUGH 52 ) REMARK 3 ORIGIN FOR THE GROUP (A): 12.8740 -11.2589 51.9537 REMARK 3 T TENSOR REMARK 3 T11: 0.1058 T22: 0.1135 REMARK 3 T33: 0.1914 T12: 0.0131 REMARK 3 T13: 0.0071 T23: -0.0029 REMARK 3 L TENSOR REMARK 3 L11: 1.9843 L22: 1.7773 REMARK 3 L33: 2.4406 L12: 0.1682 REMARK 3 L13: -0.6253 L23: -0.5870 REMARK 3 S TENSOR REMARK 3 S11: -0.0228 S12: 0.1516 S13: -0.2625 REMARK 3 S21: -0.0569 S22: -0.0599 S23: -0.3999 REMARK 3 S31: 0.2407 S32: 0.2554 S33: 0.0696 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 53 THROUGH 88 ) REMARK 3 ORIGIN FOR THE GROUP (A): 4.3282 -7.9766 57.8321 REMARK 3 T TENSOR REMARK 3 T11: 0.0436 T22: 0.0457 REMARK 3 T33: 0.0592 T12: -0.0053 REMARK 3 T13: -0.0050 T23: -0.0001 REMARK 3 L TENSOR REMARK 3 L11: 1.1380 L22: 2.3632 REMARK 3 L33: 1.5624 L12: -0.2042 REMARK 3 L13: -0.3477 L23: 0.0870 REMARK 3 S TENSOR REMARK 3 S11: -0.0206 S12: -0.0619 S13: 0.0083 REMARK 3 S21: -0.0105 S22: 0.0284 S23: -0.0387 REMARK 3 S31: 0.0518 S32: -0.0271 S33: -0.0069 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 89 THROUGH 102 ) REMARK 3 ORIGIN FOR THE GROUP (A): 11.2324 -10.7505 64.4141 REMARK 3 T TENSOR REMARK 3 T11: 0.0705 T22: 0.0764 REMARK 3 T33: 0.0832 T12: 0.0041 REMARK 3 T13: -0.0129 T23: 0.0042 REMARK 3 L TENSOR REMARK 3 L11: 6.0002 L22: 3.4070 REMARK 3 L33: 2.9294 L12: 2.2440 REMARK 3 L13: -1.4458 L23: -0.7007 REMARK 3 S TENSOR REMARK 3 S11: 0.1213 S12: -0.2361 S13: -0.0380 REMARK 3 S21: 0.0478 S22: -0.0958 S23: -0.1488 REMARK 3 S31: 0.0157 S32: 0.2087 S33: -0.0262 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 103 THROUGH 163 ) REMARK 3 ORIGIN FOR THE GROUP (A): -6.1451 -4.2725 64.8460 REMARK 3 T TENSOR REMARK 3 T11: 0.0723 T22: 0.0738 REMARK 3 T33: 0.0585 T12: 0.0077 REMARK 3 T13: 0.0005 T23: -0.0061 REMARK 3 L TENSOR REMARK 3 L11: 1.3849 L22: 1.0037 REMARK 3 L33: 0.8149 L12: -0.1119 REMARK 3 L13: 0.0073 L23: 0.0938 REMARK 3 S TENSOR REMARK 3 S11: 0.0136 S12: -0.0092 S13: -0.0098 REMARK 3 S21: 0.0529 S22: 0.0141 S23: 0.0348 REMARK 3 S31: 0.0025 S32: -0.0297 S33: -0.0256 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 164 THROUGH 215 ) REMARK 3 ORIGIN FOR THE GROUP (A): -5.2031 -1.2490 51.3559 REMARK 3 T TENSOR REMARK 3 T11: 0.0707 T22: 0.0789 REMARK 3 T33: 0.0652 T12: 0.0075 REMARK 3 T13: -0.0000 T23: 0.0108 REMARK 3 L TENSOR REMARK 3 L11: 1.6071 L22: 0.3906 REMARK 3 L33: 1.7773 L12: -0.4210 REMARK 3 L13: -0.3840 L23: -0.1305 REMARK 3 S TENSOR REMARK 3 S11: -0.0096 S12: 0.0564 S13: 0.0239 REMARK 3 S21: -0.0841 S22: -0.0020 S23: 0.0252 REMARK 3 S31: -0.0380 S32: -0.1444 S33: 0.0076 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 216 THROUGH 229 ) REMARK 3 ORIGIN FOR THE GROUP (A): -11.9748 1.7066 44.2517 REMARK 3 T TENSOR REMARK 3 T11: 0.1316 T22: 0.1714 REMARK 3 T33: 0.0843 T12: 0.0128 REMARK 3 T13: -0.0219 T23: 0.0183 REMARK 3 L TENSOR REMARK 3 L11: 4.7690 L22: 6.4204 REMARK 3 L33: 1.6867 L12: 3.7667 REMARK 3 L13: 0.1787 L23: 0.3841 REMARK 3 S TENSOR REMARK 3 S11: -0.2180 S12: 0.2515 S13: 0.3465 REMARK 3 S21: -0.4923 S22: 0.2358 S23: 0.4342 REMARK 3 S31: -0.1250 S32: -0.3239 S33: -0.0089 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 230 THROUGH 245 ) REMARK 3 ORIGIN FOR THE GROUP (A): 2.3239 0.3126 45.9801 REMARK 3 T TENSOR REMARK 3 T11: 0.1072 T22: 0.0930 REMARK 3 T33: 0.0764 T12: -0.0111 REMARK 3 T13: 0.0076 T23: 0.0076 REMARK 3 L TENSOR REMARK 3 L11: 2.8527 L22: 1.4778 REMARK 3 L33: 2.3828 L12: -1.1055 REMARK 3 L13: -0.1858 L23: 0.0700 REMARK 3 S TENSOR REMARK 3 S11: 0.1008 S12: 0.1333 S13: 0.1718 REMARK 3 S21: -0.1438 S22: -0.0691 S23: -0.1859 REMARK 3 S31: -0.1774 S32: 0.1334 S33: 0.0032 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 246 THROUGH 259 ) REMARK 3 ORIGIN FOR THE GROUP (A): -6.9284 -4.8644 38.7580 REMARK 3 T TENSOR REMARK 3 T11: 0.0925 T22: 0.1575 REMARK 3 T33: 0.0501 T12: -0.0224 REMARK 3 T13: 0.0091 T23: -0.0013 REMARK 3 L TENSOR REMARK 3 L11: 6.7471 L22: 6.4370 REMARK 3 L33: 3.5643 L12: 2.1459 REMARK 3 L13: 0.6619 L23: 0.1133 REMARK 3 S TENSOR REMARK 3 S11: -0.0796 S12: 0.3377 S13: 0.0564 REMARK 3 S21: -0.1299 S22: 0.0028 S23: 0.1870 REMARK 3 S31: 0.0734 S32: -0.4872 S33: 0.0783 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5N5G COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 14-FEB-17. REMARK 100 THE DEPOSITION ID IS D_1200003542. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 30-OCT-12 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I04 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9795 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M-F REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 53183 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.290 REMARK 200 RESOLUTION RANGE LOW (A) : 40.260 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.3 REMARK 200 DATA REDUNDANCY : 3.600 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 12.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.29 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.31 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.7 REMARK 200 DATA REDUNDANCY IN SHELL : 3.40 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.900 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 2WGH REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 39.16 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.02 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.03 M MGCL2, 0.03 M CACL2, 0.1 M MOPS REMARK 280 PH 7.5, 0.1 M HEPES SODIUM SALT PH 7.50, 12.5% W/V PEG 3350, REMARK 280 12.5% W/V PEG 1000, 12.5% W/V MPD, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 291.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 33.97000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 610 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 9700 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -114.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A 21 REMARK 465 PRO A 22 REMARK 465 LEU A 23 REMARK 465 ALA A 24 REMARK 465 HIS A 25 REMARK 465 SER A 26 REMARK 465 LYS A 260 REMARK 465 ASN A 261 REMARK 465 ARG A 262 REMARK 465 SER A 263 REMARK 465 VAL A 264 REMARK 465 ALA A 265 REMARK 465 GLU A 266 REMARK 465 LYS A 267 REMARK 465 HIS A 268 REMARK 465 HIS A 269 REMARK 465 HIS A 270 REMARK 465 HIS A 271 REMARK 465 HIS A 272 REMARK 465 HIS A 273 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 HE21 GLN A 227 O HOH A 401 1.43 REMARK 500 HZ1 LYS A 257 O HOH A 402 1.49 REMARK 500 HG2 GLN A 227 O HOH A 401 1.51 REMARK 500 NE2 GLN A 227 O HOH A 401 1.85 REMARK 500 O HOH A 482 O HOH A 659 1.87 REMARK 500 O HOH A 445 O HOH A 595 1.93 REMARK 500 NZ LYS A 257 O HOH A 402 1.95 REMARK 500 O HOH A 637 O HOH A 656 1.98 REMARK 500 OE1 GLU A 28 O HOH A 403 2.00 REMARK 500 O HOH A 661 O HOH A 670 2.07 REMARK 500 O SER A 154 O HOH A 404 2.08 REMARK 500 O HOH A 590 O HOH A 660 2.10 REMARK 500 O HOH A 404 O HOH A 611 2.10 REMARK 500 CG GLN A 227 O HOH A 401 2.11 REMARK 500 O HOH A 541 O HOH A 681 2.11 REMARK 500 O HOH A 611 O HOH A 706 2.14 REMARK 500 CD GLN A 227 O HOH A 401 2.16 REMARK 500 O HOH A 485 O HOH A 677 2.16 REMARK 500 O6 BCN A 304 O HOH A 405 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 632 O HOH A 649 1554 2.12 REMARK 500 O HOH A 686 O HOH A 694 2548 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 84 144.61 71.89 REMARK 500 TRP A 87 69.93 68.03 REMARK 500 ALA A 178 -104.84 -151.85 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 301 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 114 NE2 REMARK 620 2 HIS A 116 ND1 97.9 REMARK 620 3 HIS A 179 NE2 105.1 108.5 REMARK 620 4 HOH A 533 O 114.4 115.8 113.6 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 302 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 118 OD2 REMARK 620 2 CYS A 198 SG 108.5 REMARK 620 3 HIS A 240 NE2 88.4 95.9 REMARK 620 4 HOH A 533 O 82.0 112.8 151.3 REMARK 620 5 HOH A 555 O 159.6 91.4 84.6 95.1 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 303 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 BCN A 304 O4 REMARK 620 2 BCN A 304 N1 66.7 REMARK 620 3 BCN A 304 O22 84.3 63.1 REMARK 620 4 BCN A 304 O6 101.5 63.4 118.0 REMARK 620 5 HOH A 405 O 67.7 84.8 144.2 51.5 REMARK 620 6 HOH A 417 O 147.7 81.1 78.2 64.6 113.9 REMARK 620 7 HOH A 467 O 68.6 134.6 105.0 134.9 85.7 142.2 REMARK 620 8 HOH A 549 O 129.8 131.3 145.1 68.1 68.5 74.3 84.7 REMARK 620 9 HOH A 551 O 130.0 135.9 77.3 128.3 137.9 72.2 72.0 74.1 REMARK 620 N 1 2 3 4 5 6 7 8 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue BCN A 304 DBREF 5N5G A 21 266 UNP Q9XAY4 Q9XAY4_PSEAI 21 266 SEQADV 5N5G LYS A 267 UNP Q9XAY4 EXPRESSION TAG SEQADV 5N5G HIS A 268 UNP Q9XAY4 EXPRESSION TAG SEQADV 5N5G HIS A 269 UNP Q9XAY4 EXPRESSION TAG SEQADV 5N5G HIS A 270 UNP Q9XAY4 EXPRESSION TAG SEQADV 5N5G HIS A 271 UNP Q9XAY4 EXPRESSION TAG SEQADV 5N5G HIS A 272 UNP Q9XAY4 EXPRESSION TAG SEQADV 5N5G HIS A 273 UNP Q9XAY4 EXPRESSION TAG SEQRES 1 A 253 SER PRO LEU ALA HIS SER GLY GLU PRO SER GLY GLU TYR SEQRES 2 A 253 PRO THR VAL ASN GLU ILE PRO VAL GLY GLU VAL ARG LEU SEQRES 3 A 253 TYR GLN ILE ALA ASP GLY VAL TRP SER HIS ILE ALA THR SEQRES 4 A 253 GLN SER PHE ASP GLY ALA VAL TYR PRO SER ASN GLY LEU SEQRES 5 A 253 ILE VAL ARG ASP GLY ASP GLU LEU LEU LEU ILE ASP THR SEQRES 6 A 253 ALA TRP GLY ALA LYS ASN THR ALA ALA LEU LEU ALA GLU SEQRES 7 A 253 ILE GLU LYS GLN ILE GLY LEU PRO VAL THR ARG ALA VAL SEQRES 8 A 253 SER THR HIS PHE HIS ASP ASP ARG VAL GLY GLY VAL ASP SEQRES 9 A 253 VAL LEU ARG ALA ALA GLY VAL ALA THR TYR ALA SER PRO SEQRES 10 A 253 SER THR ARG ARG LEU ALA GLU ALA GLU GLY ASN GLU ILE SEQRES 11 A 253 PRO THR HIS SER LEU GLU GLY LEU SER SER SER GLY ASP SEQRES 12 A 253 ALA VAL ARG PHE GLY PRO VAL GLU LEU PHE TYR PRO GLY SEQRES 13 A 253 ALA ALA HIS SER THR ASP ASN LEU VAL VAL TYR VAL PRO SEQRES 14 A 253 SER ALA ASN VAL LEU TYR GLY GLY CYS ALA VAL HIS GLU SEQRES 15 A 253 LEU SER SER THR SER ALA GLY ASN VAL ALA ASP ALA ASP SEQRES 16 A 253 LEU ALA GLU TRP PRO THR SER VAL GLU ARG ILE GLN LYS SEQRES 17 A 253 HIS TYR PRO GLU ALA GLU VAL VAL ILE PRO GLY HIS GLY SEQRES 18 A 253 LEU PRO GLY GLY LEU ASP LEU LEU GLN HIS THR ALA ASN SEQRES 19 A 253 VAL VAL LYS ALA HIS LYS ASN ARG SER VAL ALA GLU LYS SEQRES 20 A 253 HIS HIS HIS HIS HIS HIS HET ZN A 301 1 HET ZN A 302 1 HET ZN A 303 1 HET BCN A 304 11 HETNAM ZN ZINC ION HETNAM BCN BICINE FORMUL 2 ZN 3(ZN 2+) FORMUL 5 BCN C6 H13 N O4 FORMUL 6 HOH *317(H2 O) HELIX 1 AA1 THR A 35 ILE A 39 5 5 HELIX 2 AA2 GLY A 88 ILE A 103 1 16 HELIX 3 AA3 HIS A 116 GLY A 121 1 6 HELIX 4 AA4 GLY A 122 ALA A 129 1 8 HELIX 5 AA5 SER A 136 GLY A 147 1 12 HELIX 6 AA6 CYS A 198 VAL A 200 5 3 HELIX 7 AA7 GLU A 218 TYR A 230 1 13 HELIX 8 AA8 LEU A 246 HIS A 259 1 14 SHEET 1 AA1 7 VAL A 44 ALA A 50 0 SHEET 2 AA1 7 VAL A 53 PHE A 62 -1 O ILE A 57 N ARG A 45 SHEET 3 AA1 7 ALA A 65 ASP A 76 -1 O ALA A 65 N PHE A 62 SHEET 4 AA1 7 GLU A 79 ILE A 83 -1 O ILE A 83 N LEU A 72 SHEET 5 AA1 7 VAL A 107 VAL A 111 1 O ARG A 109 N LEU A 82 SHEET 6 AA1 7 ALA A 132 ALA A 135 1 O TYR A 134 N ALA A 110 SHEET 7 AA1 7 HIS A 153 SER A 154 1 O HIS A 153 N THR A 133 SHEET 1 AA2 5 ALA A 164 PHE A 167 0 SHEET 2 AA2 5 VAL A 170 PHE A 173 -1 O LEU A 172 N VAL A 165 SHEET 3 AA2 5 VAL A 185 VAL A 188 -1 O VAL A 185 N PHE A 173 SHEET 4 AA2 5 VAL A 193 GLY A 197 -1 O TYR A 195 N VAL A 186 SHEET 5 AA2 5 VAL A 235 PRO A 238 1 O VAL A 235 N LEU A 194 LINK NE2 HIS A 114 ZN ZN A 301 1555 1555 2.06 LINK ND1 HIS A 116 ZN ZN A 301 1555 1555 2.05 LINK OD2 ASP A 118 ZN ZN A 302 1555 1555 2.17 LINK NE2 HIS A 179 ZN ZN A 301 1555 1555 1.97 LINK SG CYS A 198 ZN ZN A 302 1555 1555 2.46 LINK NE2 HIS A 240 ZN ZN A 302 1555 1555 2.19 LINK ZN ZN A 301 O HOH A 533 1555 1555 1.89 LINK ZN ZN A 302 O HOH A 533 1555 1555 2.18 LINK ZN ZN A 302 O HOH A 555 1555 1555 2.06 LINK ZN ZN A 303 O4 BCN A 304 1555 1555 2.48 LINK ZN ZN A 303 N1 BCN A 304 1555 1555 2.69 LINK ZN ZN A 303 O22 BCN A 304 1555 1555 2.36 LINK ZN ZN A 303 O6 BCN A 304 1555 1555 2.52 LINK ZN ZN A 303 O HOH A 405 1555 1555 2.50 LINK ZN ZN A 303 O HOH A 417 1555 1555 2.21 LINK ZN ZN A 303 O HOH A 467 1555 1555 2.33 LINK ZN ZN A 303 O HOH A 549 1555 1555 2.57 LINK ZN ZN A 303 O HOH A 551 1555 1555 2.40 SITE 1 AC1 5 HIS A 114 HIS A 116 HIS A 179 ZN A 302 SITE 2 AC1 5 HOH A 533 SITE 1 AC2 6 ASP A 118 CYS A 198 HIS A 240 ZN A 301 SITE 2 AC2 6 HOH A 533 HOH A 555 SITE 1 AC3 6 BCN A 304 HOH A 405 HOH A 417 HOH A 467 SITE 2 AC3 6 HOH A 549 HOH A 551 SITE 1 AC4 13 GLN A 60 GLY A 88 ALA A 89 LYS A 90 SITE 2 AC4 13 ASP A 117 ZN A 303 HOH A 405 HOH A 417 SITE 3 AC4 13 HOH A 467 HOH A 549 HOH A 551 HOH A 559 SITE 4 AC4 13 HOH A 566 CRYST1 39.760 67.940 40.360 90.00 94.01 90.00 P 1 21 1 2 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.025151 0.000000 0.001763 0.00000 SCALE2 0.000000 0.014719 0.000000 0.00000 SCALE3 0.000000 0.000000 0.024838 0.00000