HEADER HYDROLASE 14-FEB-17 5N5H TITLE CRYSTAL STRUCTURE OF METALLO-BETA-LACTAMASE VIM-1 IN COMPLEX WITH TITLE 2 ML302F INHIBITOR COMPND MOL_ID: 1; COMPND 2 MOLECULE: BETA-LACTAMASE VIM-1; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: CLASS B CARBAPENEMASE VIM-1,METALLO-BETA-LACTAMASE,METALLO- COMPND 5 BETA-LACTAMASE VIM-1,METALLOBETA-LACTAMASE,VIM-1,VIM-1 METALLO-BETA COMPND 6 LACTAMASE,VIM-1 METALLO-BETA-LACTAMASE,VIM-1 PROTEIN; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PSEUDOMONAS AERUGINOSA; SOURCE 3 ORGANISM_TAXID: 287; SOURCE 4 GENE: BLAVIM, BLAVIM-1; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: ROSETTA2; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: POPINE KEYWDS LACTAMASE, INHIBITOR, CARBAPENEMASE, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR R.SALIMRAJ,P.HINCHLIFFE,J.SPENCER REVDAT 3 17-JAN-24 5N5H 1 REMARK REVDAT 2 27-FEB-19 5N5H 1 JRNL REVDAT 1 07-MAR-18 5N5H 0 JRNL AUTH R.SALIMRAJ,P.HINCHLIFFE,M.KOSMOPOULOU,J.M.TYRRELL,J.BREM, JRNL AUTH 2 S.S.VAN BERKEL,A.VERMA,R.J.OWENS,M.A.MCDONOUGH,T.R.WALSH, JRNL AUTH 3 C.J.SCHOFIELD,J.SPENCER JRNL TITL CRYSTAL STRUCTURES OF VIM-1 COMPLEXES EXPLAIN ACTIVE SITE JRNL TITL 2 HETEROGENEITY IN VIM-CLASS METALLO-BETA-LACTAMASES. JRNL REF FEBS J. V. 286 169 2019 JRNL REFN ISSN 1742-4658 JRNL PMID 30430727 JRNL DOI 10.1111/FEBS.14695 REMARK 2 REMARK 2 RESOLUTION. 1.30 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.9_1692 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.30 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 28.58 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.390 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 52032 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.155 REMARK 3 R VALUE (WORKING SET) : 0.155 REMARK 3 FREE R VALUE : 0.168 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.160 REMARK 3 FREE R VALUE TEST SET COUNT : 2684 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 28.5820 - 3.4670 0.99 2665 140 0.1344 0.1497 REMARK 3 2 3.4670 - 2.7526 0.99 2599 148 0.1415 0.1579 REMARK 3 3 2.7526 - 2.4048 1.00 2635 120 0.1365 0.1672 REMARK 3 4 2.4048 - 2.1850 1.00 2596 146 0.1323 0.1581 REMARK 3 5 2.1850 - 2.0285 1.00 2614 137 0.1284 0.1392 REMARK 3 6 2.0285 - 1.9089 1.00 2564 162 0.1376 0.1341 REMARK 3 7 1.9089 - 1.8133 1.00 2583 167 0.1445 0.1614 REMARK 3 8 1.8133 - 1.7344 1.00 2592 141 0.1455 0.1574 REMARK 3 9 1.7344 - 1.6676 1.00 2584 156 0.1547 0.1692 REMARK 3 10 1.6676 - 1.6101 1.00 2606 145 0.1623 0.1482 REMARK 3 11 1.6101 - 1.5597 1.00 2615 136 0.1637 0.1739 REMARK 3 12 1.5597 - 1.5152 1.00 2593 142 0.1644 0.1718 REMARK 3 13 1.5152 - 1.4753 1.00 2586 141 0.1710 0.1775 REMARK 3 14 1.4753 - 1.4393 1.00 2618 122 0.1841 0.2052 REMARK 3 15 1.4393 - 1.4066 1.00 2566 161 0.1961 0.2016 REMARK 3 16 1.4066 - 1.3766 1.00 2583 145 0.2148 0.2242 REMARK 3 17 1.3766 - 1.3491 0.99 2585 129 0.2493 0.2970 REMARK 3 18 1.3491 - 1.3236 0.99 2585 119 0.2681 0.2886 REMARK 3 19 1.3236 - 1.3000 0.99 2579 127 0.2916 0.3086 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.120 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 16.700 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.020 1838 REMARK 3 ANGLE : 1.675 2523 REMARK 3 CHIRALITY : 0.103 287 REMARK 3 PLANARITY : 0.010 334 REMARK 3 DIHEDRAL : 14.092 655 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 12 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 31 THROUGH 52 ) REMARK 3 ORIGIN FOR THE GROUP (A): -3.9442 -10.5482 -9.0139 REMARK 3 T TENSOR REMARK 3 T11: 0.1064 T22: 0.1529 REMARK 3 T33: 0.2045 T12: 0.0286 REMARK 3 T13: 0.0490 T23: 0.0286 REMARK 3 L TENSOR REMARK 3 L11: 2.4836 L22: 1.8651 REMARK 3 L33: 2.1272 L12: 0.6888 REMARK 3 L13: -0.6239 L23: -0.6735 REMARK 3 S TENSOR REMARK 3 S11: -0.1065 S12: 0.1490 S13: -0.4442 REMARK 3 S21: -0.2505 S22: -0.0686 S23: -0.3825 REMARK 3 S31: 0.3428 S32: 0.2189 S33: 0.1289 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 53 THROUGH 76 ) REMARK 3 ORIGIN FOR THE GROUP (A): -11.2707 -9.7029 -5.1462 REMARK 3 T TENSOR REMARK 3 T11: 0.0302 T22: 0.0582 REMARK 3 T33: 0.0521 T12: 0.0094 REMARK 3 T13: 0.0077 T23: 0.0075 REMARK 3 L TENSOR REMARK 3 L11: 2.4380 L22: 4.5362 REMARK 3 L33: 1.8141 L12: 1.8464 REMARK 3 L13: -0.1212 L23: -0.1226 REMARK 3 S TENSOR REMARK 3 S11: 0.0100 S12: -0.0659 S13: -0.0615 REMARK 3 S21: -0.0487 S22: -0.0955 S23: -0.0812 REMARK 3 S31: 0.1333 S32: -0.0213 S33: 0.0395 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 77 THROUGH 88 ) REMARK 3 ORIGIN FOR THE GROUP (A): -10.6296 -3.2272 2.0328 REMARK 3 T TENSOR REMARK 3 T11: 0.0282 T22: 0.0778 REMARK 3 T33: 0.0621 T12: 0.0052 REMARK 3 T13: 0.0027 T23: 0.0110 REMARK 3 L TENSOR REMARK 3 L11: 0.8285 L22: 2.5176 REMARK 3 L33: 3.5034 L12: -1.1603 REMARK 3 L13: 0.0466 L23: 0.6427 REMARK 3 S TENSOR REMARK 3 S11: -0.0946 S12: -0.0982 S13: -0.0167 REMARK 3 S21: 0.0611 S22: 0.0709 S23: -0.1855 REMARK 3 S31: -0.0647 S32: 0.2563 S33: -0.0076 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 89 THROUGH 102 ) REMARK 3 ORIGIN FOR THE GROUP (A): -3.9938 -10.6059 3.5310 REMARK 3 T TENSOR REMARK 3 T11: 0.0535 T22: 0.1074 REMARK 3 T33: 0.1112 T12: 0.0299 REMARK 3 T13: 0.0078 T23: 0.0418 REMARK 3 L TENSOR REMARK 3 L11: 6.4160 L22: 4.6072 REMARK 3 L33: 2.2252 L12: 2.5664 REMARK 3 L13: -0.1130 L23: 0.3085 REMARK 3 S TENSOR REMARK 3 S11: 0.0277 S12: -0.0801 S13: -0.0683 REMARK 3 S21: -0.0433 S22: -0.0969 S23: -0.3707 REMARK 3 S31: 0.0959 S32: 0.3230 S33: 0.0664 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 103 THROUGH 122 ) REMARK 3 ORIGIN FOR THE GROUP (A): -15.1745 -5.0415 2.1056 REMARK 3 T TENSOR REMARK 3 T11: 0.0399 T22: 0.0721 REMARK 3 T33: 0.0526 T12: 0.0076 REMARK 3 T13: 0.0065 T23: 0.0046 REMARK 3 L TENSOR REMARK 3 L11: 1.4564 L22: 1.2394 REMARK 3 L33: 1.0401 L12: -0.1543 REMARK 3 L13: 0.0064 L23: -0.1876 REMARK 3 S TENSOR REMARK 3 S11: -0.0140 S12: -0.0606 S13: 0.0251 REMARK 3 S21: 0.0342 S22: -0.0136 S23: -0.0826 REMARK 3 S31: 0.0469 S32: 0.1184 S33: 0.0219 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 123 THROUGH 146 ) REMARK 3 ORIGIN FOR THE GROUP (A): -22.3699 -5.6354 7.6340 REMARK 3 T TENSOR REMARK 3 T11: 0.0831 T22: 0.0602 REMARK 3 T33: 0.0362 T12: 0.0065 REMARK 3 T13: 0.0293 T23: -0.0054 REMARK 3 L TENSOR REMARK 3 L11: 3.0456 L22: 2.9545 REMARK 3 L33: 2.1809 L12: 0.0439 REMARK 3 L13: 0.8291 L23: -0.5726 REMARK 3 S TENSOR REMARK 3 S11: 0.0182 S12: -0.1239 S13: -0.0715 REMARK 3 S21: 0.2382 S22: 0.0156 S23: 0.1550 REMARK 3 S31: 0.0771 S32: 0.0013 S33: -0.0128 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 147 THROUGH 163 ) REMARK 3 ORIGIN FOR THE GROUP (A): -25.6966 0.4973 3.5493 REMARK 3 T TENSOR REMARK 3 T11: 0.0766 T22: 0.0799 REMARK 3 T33: 0.0761 T12: 0.0134 REMARK 3 T13: 0.0164 T23: -0.0162 REMARK 3 L TENSOR REMARK 3 L11: 1.2190 L22: 2.5681 REMARK 3 L33: 2.8892 L12: -0.5627 REMARK 3 L13: 0.7445 L23: -2.2394 REMARK 3 S TENSOR REMARK 3 S11: -0.0718 S12: -0.0314 S13: 0.0266 REMARK 3 S21: 0.0777 S22: 0.0280 S23: 0.1512 REMARK 3 S31: -0.0718 S32: -0.1690 S33: 0.0383 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 164 THROUGH 183 ) REMARK 3 ORIGIN FOR THE GROUP (A): -22.8760 3.6222 -4.3066 REMARK 3 T TENSOR REMARK 3 T11: 0.0373 T22: 0.0482 REMARK 3 T33: 0.0523 T12: 0.0121 REMARK 3 T13: 0.0114 T23: -0.0052 REMARK 3 L TENSOR REMARK 3 L11: 1.8798 L22: 1.7793 REMARK 3 L33: 2.7077 L12: 0.4170 REMARK 3 L13: 1.4443 L23: 1.0431 REMARK 3 S TENSOR REMARK 3 S11: -0.0974 S12: -0.0732 S13: 0.1601 REMARK 3 S21: -0.0419 S22: 0.0186 S23: 0.1361 REMARK 3 S31: -0.1401 S32: -0.1088 S33: 0.0505 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 184 THROUGH 215 ) REMARK 3 ORIGIN FOR THE GROUP (A): -19.4444 -3.3582 -11.8322 REMARK 3 T TENSOR REMARK 3 T11: 0.0650 T22: 0.0661 REMARK 3 T33: 0.0573 T12: 0.0084 REMARK 3 T13: 0.0089 T23: 0.0136 REMARK 3 L TENSOR REMARK 3 L11: 1.8990 L22: 1.6544 REMARK 3 L33: 2.2144 L12: -0.0832 REMARK 3 L13: -0.1014 L23: -0.1843 REMARK 3 S TENSOR REMARK 3 S11: -0.0059 S12: 0.0932 S13: -0.0459 REMARK 3 S21: -0.1174 S22: 0.0054 S23: 0.0793 REMARK 3 S31: 0.1173 S32: -0.0851 S33: -0.0065 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 216 THROUGH 229 ) REMARK 3 ORIGIN FOR THE GROUP (A): -27.6707 2.5698 -15.5453 REMARK 3 T TENSOR REMARK 3 T11: 0.0780 T22: 0.1000 REMARK 3 T33: 0.0660 T12: 0.0099 REMARK 3 T13: -0.0093 T23: 0.0124 REMARK 3 L TENSOR REMARK 3 L11: 3.8170 L22: 5.6795 REMARK 3 L33: 2.2589 L12: 0.7239 REMARK 3 L13: 0.2809 L23: -1.0895 REMARK 3 S TENSOR REMARK 3 S11: -0.0628 S12: 0.1998 S13: 0.2823 REMARK 3 S21: -0.3324 S22: 0.1382 S23: 0.3440 REMARK 3 S31: -0.0761 S32: -0.2163 S33: -0.0531 REMARK 3 TLS GROUP : 11 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 230 THROUGH 245 ) REMARK 3 ORIGIN FOR THE GROUP (A): -13.4102 0.7524 -14.5875 REMARK 3 T TENSOR REMARK 3 T11: 0.0738 T22: 0.0718 REMARK 3 T33: 0.0772 T12: -0.0016 REMARK 3 T13: 0.0166 T23: 0.0148 REMARK 3 L TENSOR REMARK 3 L11: 2.2211 L22: 3.9440 REMARK 3 L33: 1.9301 L12: -0.8926 REMARK 3 L13: -0.0164 L23: -0.1759 REMARK 3 S TENSOR REMARK 3 S11: 0.0703 S12: 0.1727 S13: 0.2588 REMARK 3 S21: -0.2255 S22: -0.0525 S23: -0.2618 REMARK 3 S31: -0.1312 S32: 0.1534 S33: 0.0180 REMARK 3 TLS GROUP : 12 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 246 THROUGH 264 ) REMARK 3 ORIGIN FOR THE GROUP (A): -26.1489 -6.4471 -21.7386 REMARK 3 T TENSOR REMARK 3 T11: 0.1049 T22: 0.1449 REMARK 3 T33: 0.1085 T12: -0.0151 REMARK 3 T13: -0.0040 T23: -0.0184 REMARK 3 L TENSOR REMARK 3 L11: 3.6860 L22: 3.2656 REMARK 3 L33: 1.5070 L12: 2.8704 REMARK 3 L13: 0.9031 L23: 0.2946 REMARK 3 S TENSOR REMARK 3 S11: 0.0611 S12: 0.2553 S13: -0.0896 REMARK 3 S21: -0.0870 S22: -0.0781 S23: 0.2638 REMARK 3 S31: 0.1405 S32: -0.3180 S33: -0.0100 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5N5H COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 14-FEB-17. REMARK 100 THE DEPOSITION ID IS D_1200003541. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 02-AUG-14 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I02 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9795 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M-F REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 52058 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.300 REMARK 200 RESOLUTION RANGE LOW (A) : 28.582 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 6.400 REMARK 200 R MERGE (I) : 0.07700 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 21.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.30 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.32 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.4 REMARK 200 DATA REDUNDANCY IN SHELL : 6.10 REMARK 200 R MERGE FOR SHELL (I) : 0.44600 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 7.900 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 5N5G REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 38.70 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.01 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.02 M NA-FORMATE, 0.02 M NH4-ACETATE, REMARK 280 0.02 M NA3-CITRATE, 0.02 M NAK-TARTRATE, 0.02 M NA-OXAMATE, 0.1 REMARK 280 M MORPHEUS (42) BUFFER 1 PH 6.5, 12.5% W/V PEG 3350, 12.5% W/V REMARK 280 PEG 1000 AND 12.5% W/V MPD, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 291.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 33.82600 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A 21 REMARK 465 PRO A 22 REMARK 465 LEU A 23 REMARK 465 ALA A 24 REMARK 465 HIS A 25 REMARK 465 SER A 26 REMARK 465 GLY A 27 REMARK 465 GLU A 28 REMARK 465 PRO A 29 REMARK 465 SER A 30 REMARK 465 ALA A 265 REMARK 465 GLU A 266 REMARK 465 LYS A 267 REMARK 465 HIS A 268 REMARK 465 HIS A 269 REMARK 465 HIS A 270 REMARK 465 HIS A 271 REMARK 465 HIS A 272 REMARK 465 HIS A 273 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 HZ3 LYS A 257 O HOH A 401 0.71 REMARK 500 ZN ZN A 302 H3 S3C A 303 1.33 REMARK 500 O HOH A 617 O HOH A 635 1.52 REMARK 500 HG SER A 138 O HOH A 402 1.56 REMARK 500 NZ LYS A 257 O HOH A 401 1.65 REMARK 500 O HOH A 450 O HOH A 514 1.65 REMARK 500 O HOH A 427 O HOH A 596 1.98 REMARK 500 O HOH A 548 O HOH A 601 2.01 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 602 O HOH A 603 1455 1.89 REMARK 500 O HOH A 514 O HOH A 548 1556 2.10 REMARK 500 O HOH A 560 O HOH A 586 2455 2.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 PRO A 40 CD PRO A 40 N 0.086 REMARK 500 TYR A 47 CE1 TYR A 47 CZ -0.087 REMARK 500 ARG A 127 N ARG A 127 CA 0.127 REMARK 500 ARG A 127 N ARG A 127 CA 0.129 REMARK 500 ARG A 127 CD ARG A 127 NE -0.140 REMARK 500 ARG A 127 CZ ARG A 127 NH1 0.108 REMARK 500 ARG A 127 CZ ARG A 127 NH1 0.135 REMARK 500 ARG A 127 CZ ARG A 127 NH2 -0.080 REMARK 500 ARG A 127 CA ARG A 127 C 0.168 REMARK 500 ARG A 127 CA ARG A 127 C 0.169 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 127 NE - CZ - NH1 ANGL. DEV. = 7.1 DEGREES REMARK 500 ARG A 127 NE - CZ - NH1 ANGL. DEV. = 12.4 DEGREES REMARK 500 ARG A 127 NE - CZ - NH2 ANGL. DEV. = -9.6 DEGREES REMARK 500 ARG A 127 NE - CZ - NH2 ANGL. DEV. = -10.2 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 84 145.10 74.27 REMARK 500 TRP A 87 63.22 65.90 REMARK 500 ALA A 178 -105.34 -151.89 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 637 DISTANCE = 6.36 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 302 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 114 NE2 REMARK 620 2 HIS A 116 ND1 99.0 REMARK 620 3 HIS A 179 NE2 103.7 108.7 REMARK 620 4 S3C A 303 S9 119.0 112.9 112.2 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 301 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 118 OD2 REMARK 620 2 CYS A 198 SG 102.9 REMARK 620 3 HIS A 240 NE2 90.8 105.8 REMARK 620 4 S3C A 303 S9 87.4 127.2 125.9 REMARK 620 5 S3C A 303 O7 159.6 97.4 84.8 79.3 REMARK 620 N 1 2 3 4 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue S3C A 303 DBREF 5N5H A 21 266 UNP Q9XAY4 Q9XAY4_PSEAI 21 266 SEQADV 5N5H LYS A 267 UNP Q9XAY4 EXPRESSION TAG SEQADV 5N5H HIS A 268 UNP Q9XAY4 EXPRESSION TAG SEQADV 5N5H HIS A 269 UNP Q9XAY4 EXPRESSION TAG SEQADV 5N5H HIS A 270 UNP Q9XAY4 EXPRESSION TAG SEQADV 5N5H HIS A 271 UNP Q9XAY4 EXPRESSION TAG SEQADV 5N5H HIS A 272 UNP Q9XAY4 EXPRESSION TAG SEQADV 5N5H HIS A 273 UNP Q9XAY4 EXPRESSION TAG SEQRES 1 A 253 SER PRO LEU ALA HIS SER GLY GLU PRO SER GLY GLU TYR SEQRES 2 A 253 PRO THR VAL ASN GLU ILE PRO VAL GLY GLU VAL ARG LEU SEQRES 3 A 253 TYR GLN ILE ALA ASP GLY VAL TRP SER HIS ILE ALA THR SEQRES 4 A 253 GLN SER PHE ASP GLY ALA VAL TYR PRO SER ASN GLY LEU SEQRES 5 A 253 ILE VAL ARG ASP GLY ASP GLU LEU LEU LEU ILE ASP THR SEQRES 6 A 253 ALA TRP GLY ALA LYS ASN THR ALA ALA LEU LEU ALA GLU SEQRES 7 A 253 ILE GLU LYS GLN ILE GLY LEU PRO VAL THR ARG ALA VAL SEQRES 8 A 253 SER THR HIS PHE HIS ASP ASP ARG VAL GLY GLY VAL ASP SEQRES 9 A 253 VAL LEU ARG ALA ALA GLY VAL ALA THR TYR ALA SER PRO SEQRES 10 A 253 SER THR ARG ARG LEU ALA GLU ALA GLU GLY ASN GLU ILE SEQRES 11 A 253 PRO THR HIS SER LEU GLU GLY LEU SER SER SER GLY ASP SEQRES 12 A 253 ALA VAL ARG PHE GLY PRO VAL GLU LEU PHE TYR PRO GLY SEQRES 13 A 253 ALA ALA HIS SER THR ASP ASN LEU VAL VAL TYR VAL PRO SEQRES 14 A 253 SER ALA ASN VAL LEU TYR GLY GLY CYS ALA VAL HIS GLU SEQRES 15 A 253 LEU SER SER THR SER ALA GLY ASN VAL ALA ASP ALA ASP SEQRES 16 A 253 LEU ALA GLU TRP PRO THR SER VAL GLU ARG ILE GLN LYS SEQRES 17 A 253 HIS TYR PRO GLU ALA GLU VAL VAL ILE PRO GLY HIS GLY SEQRES 18 A 253 LEU PRO GLY GLY LEU ASP LEU LEU GLN HIS THR ALA ASN SEQRES 19 A 253 VAL VAL LYS ALA HIS LYS ASN ARG SER VAL ALA GLU LYS SEQRES 20 A 253 HIS HIS HIS HIS HIS HIS HET ZN A 301 1 HET ZN A 302 1 HET S3C A 303 19 HETNAM ZN ZINC ION HETNAM S3C (2Z)-2-SULFANYL-3-(2,3,6-TRICHLOROPHENYL)PROP-2-ENOIC HETNAM 2 S3C ACID FORMUL 2 ZN 2(ZN 2+) FORMUL 4 S3C C9 H5 CL3 O2 S FORMUL 5 HOH *237(H2 O) HELIX 1 AA1 THR A 35 ILE A 39 5 5 HELIX 2 AA2 GLY A 88 ILE A 103 1 16 HELIX 3 AA3 HIS A 116 GLY A 121 1 6 HELIX 4 AA4 GLY A 122 ALA A 129 1 8 HELIX 5 AA5 SER A 136 GLY A 147 1 12 HELIX 6 AA6 CYS A 198 VAL A 200 5 3 HELIX 7 AA7 GLU A 218 TYR A 230 1 13 HELIX 8 AA8 LEU A 246 VAL A 264 1 19 SHEET 1 AA1 7 ARG A 45 ALA A 50 0 SHEET 2 AA1 7 VAL A 53 PHE A 62 -1 O ILE A 57 N ARG A 45 SHEET 3 AA1 7 ALA A 65 ASP A 76 -1 O ILE A 73 N TRP A 54 SHEET 4 AA1 7 GLU A 79 ILE A 83 -1 O ILE A 83 N LEU A 72 SHEET 5 AA1 7 VAL A 107 VAL A 111 1 O ARG A 109 N LEU A 82 SHEET 6 AA1 7 ALA A 132 ALA A 135 1 O ALA A 132 N ALA A 110 SHEET 7 AA1 7 HIS A 153 SER A 154 1 O HIS A 153 N THR A 133 SHEET 1 AA2 5 ALA A 164 PHE A 167 0 SHEET 2 AA2 5 VAL A 170 PHE A 173 -1 O LEU A 172 N VAL A 165 SHEET 3 AA2 5 VAL A 185 VAL A 188 -1 O VAL A 185 N PHE A 173 SHEET 4 AA2 5 VAL A 193 GLY A 197 -1 O TYR A 195 N VAL A 186 SHEET 5 AA2 5 VAL A 235 PRO A 238 1 O VAL A 235 N LEU A 194 LINK NE2 HIS A 114 ZN ZN A 302 1555 1555 2.02 LINK ND1 HIS A 116 ZN ZN A 302 1555 1555 2.01 LINK OD2 ASP A 118 ZN ZN A 301 1555 1555 2.16 LINK NE2 HIS A 179 ZN ZN A 302 1555 1555 2.03 LINK SG CYS A 198 ZN ZN A 301 1555 1555 2.24 LINK NE2 HIS A 240 ZN ZN A 301 1555 1555 2.05 LINK ZN ZN A 301 S9 S3C A 303 1555 1555 2.38 LINK ZN ZN A 301 O7 S3C A 303 1555 1555 2.37 LINK ZN ZN A 302 S9 S3C A 303 1555 1555 2.32 SITE 1 AC1 4 ASP A 118 CYS A 198 HIS A 240 S3C A 303 SITE 1 AC2 4 HIS A 114 HIS A 116 HIS A 179 S3C A 303 SITE 1 AC3 13 PHE A 62 TRP A 87 HIS A 116 ASP A 118 SITE 2 AC3 13 HIS A 179 CYS A 198 ASN A 210 HIS A 240 SITE 3 AC3 13 ZN A 301 ZN A 302 HOH A 423 HOH A 448 SITE 4 AC3 13 HOH A 454 CRYST1 39.684 67.652 40.217 90.00 91.36 90.00 P 1 21 1 2 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.025199 0.000000 0.000600 0.00000 SCALE2 0.000000 0.014782 0.000000 0.00000 SCALE3 0.000000 0.000000 0.024872 0.00000